EsuBft1029_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
ProteomeId	EsuBft1029_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Length	174
Date last modified	2016-06-14
Date creation	2016-06-14

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:345860..354681-
coding sequence from alignment at Scaffold_70:345860..354681-

spliced messenger RNA

>EsuBft1029_7a-0001 ID=EsuBft1029_7a-0001|Name=EsuBft1029_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1746bp|location=Sequence derived from alignment at Scaffold_70:345860..354681- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGAACCGTATAGAACCGGCCGGTTGTTGGCTAAGACACGGTGGCGTCGA
GAAAATGGTTGGCTGGCGACTAGGTGCAATTCAGCAATTTCTAGGATCGG
TAGAGCCCAAAGAGCTTGGAAGCACGAGGCGCCAAACGAATCTGTCGAGA
CCTCTTCAGCTTTTGGCGTCGGTGGGGATGGATTTCAAGGAAAACTATGT
TGCCGTAACTGGGGGCGAAGGGGGCGTTAGCCCCCCATGGGGTGGCTCTA
AGCACGCCGACATAGGGGAGCCTCGCGAGCGGGGAGAACCTCGACCCGAC
AACTTCCAGAAATCCACTAGGGATGACCGACCTGCCTCCCCCGAAAGCGA
GAGAGGGGAGTTCAGCGCAGATGGAATGATAGAGGGCGAGCTCGGTGTCC
CGCGTAAGTCATCTAGTGTTGTAGGAGCAGAGGGTGACGATTGGATGGAG
ACCGAGGAACAAAATGGTGTGTTATCCCGCGGTGGCTCGGAGGCAGAGGG
TGAGCTGGCATCTGGTGTTGTTGGCGTACAGAATGATGAAGAGGGGGAGA
TCGAGGAACAGAGCGATGTGTTATCCTGCGATGGCTCGGATTTTTTTGAT
CCACTGGACGTTCGCGAGGTCGGGCGGGGTGGCGACGGAATGTNTCGGAG
GCAGAGGGTGAGCTGGCATCTGGTGTTGTTGGCGTACAGAATGATGAAGA
GGGGGAGATCGAGGAACAGAGCGATGTGTTATCCTGCGATGGCTCGGATT
TGTTGGATCCACTGGACGTTCGCGAGGTCGGGCAGGGTGGCGACGGAATG
TCCGGGTCTCCACCCCGGAGGAGCGACGCAGTTCAGAGCGATGCTGAATG
GAGGCAACCACAGATACTGCACTTCGGGGTGCGCCAGTGCGGAACAAGGT
GTGGCTCTGGAGCAACCAAGGGTGATTGGAGAGCAGACTGACGTCTTTGA
CGTCGAAGAGCTTAGAGAGGCGGATGGGGTTGCGGGTGCAGGTGGAGCGG
AGGAAGACACAGGCGGGGGCGTGAACCAGACCCTCGAACCCGTCCCCGCC
GCGGAAAATGCCGCGACGGCGCAAACCGGCGTCAGCAAAAACGGCGGGAA
GAGGACGGCCAAAGGACTGACCAACAAACAGAGGAGGCTGAAGGTCGTCC
CTCTCGGCGGGGTGGAGGGCCCTTGGGAGTCTCCAGGAAACCCTCAAGAG
GGTAGTCGCAGTGACGTCCCCGCCAGGCTGACGGTGGTTCCGGCCGTACA
GGATGAAGGCAGCGGAGGGACGAACCAACACCAGTTCCAACCGCACACCT
CGAAGGCAAATCTGCAGGAGGCCAAGACCAAAGGAGGAGAACAGTTCTTT
CCTAAAAGCGTCGGAGGAGATTTGTTCTGGAGTATGGTGGAGTGTGGCAC
ACTAGGCCGTCCCGCATGGCGCGCTCGTACATCTGCCACGCTCGCAGCAG
GCTATGAACAAGGCTACGTTCTTCCATTGTTCAACAGCCTCGGGGAAACC
CTCGATCTCATCGCGGAGCAGAACTTGCAGGAGAAGGCCTTCAATCAGAC
GGTGCGACACCATTTGGGCCGTGTCTTCGACAAGGTCGTCAAGGCTAGGA
ATCTGACAGGGGAGATGATCACGTCGAAAGCGATCGCGAACCATATGTTG
AAGCCGTACCTGACGGCCTCGAGTCCTGCATCGGCGGCGGTTGGATTGGC
AGACGGGGCAAGGGACGCCGGAACAGCAAGAGAGGGTTCTGGATAA

protein sequence of EsuBft1029_7a-0001

>EsuBft1029_7 ID=EsuBft1029_7|Name=EsuBft1029_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=563bp
MVGWRLGAIQQFLGSVEPKELGSTRRQTNLSRPLQLLASVGMDFKENYVA
VTGGEGGVSPPWGGSKHADIGEPRERGEPRPDNFQKSTRDDRPASPESER
GEFSADGMIEGELGVPRKSSSVVGAEGDDWMETEEQNGVLSRGGSEAEGE
LASGVVGVQNDEEGEIEEQSDVLSCDGSDFFDPLDVREVGRGGDGMXRRQ
RVSWHLVLLAYRMMKRGRSRNRAMCYPAMARICWIHWTFARSGRVATECP
GLHPGGATQFRAMLNGGNHRYCTSGCASAEQGVALEQPRVIGEQTDVFDV
EELREADGVAGAGGAEEDTGGGVNQTLEPVPAAENAATAQTGVSKNGGKR
TAKGLTNKQRRLKVVPLGGVEGPWESPGNPQEGSRSDVPARLTVVPAVQD
EGSGGTNQHQFQPHTSKANLQEAKTKGGEQFFPKSVGGDLFWSMVECGTL
GRPAWRARTSATLAAGYEQGYVLPLFNSLGETLDLIAEQNLQEKAFNQTV
RHHLGRVFDKVVKARNLTGEMITSKAIANHMLKPYLTASSPASAAVGLAD
GARDAGTAREGSG

mRNA from alignment at Scaffold_70:345860..354681-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1029_7a-0001 ID=EsuBft1029_7a-0001|Name=EsuBft1029_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=8822bp|location=Sequence derived from alignment at Scaffold_70:345860..354681- (Ectocarpus subulatus male Bft15b)
TTGAACCGTATAGAACCGGCCGGTTGTTGGCTAAGACACGGTGGCGTCGA
GAAAATGGTTGGCTGGCGACTAGGTGCAATTCAGCAATTTCTAGGATCGG
TAGAGCCCAAAGAGCTTGGAAGCACGAGGCGCCAAACGAATCTGTCGAGA
CCTCTTCAGCTTTTGGCGTCGGTGGGGATGGATTTCAAGGAAAACTATGT
TGCCGTAACTGGGGGCGAAGGGGGCGTTAGCCCCCCATGGGGTGGCTCTA
AGCACGCCGACATAGGGGAGCCTCGCGAGCGGGGAGAACCTCGACCCGAC
AACTTCCAGAAATCCACTAGGGATGACCGACCTGCCTCCCCCGAAAGCGA
GAGAGGGGAGTTCAGCGCAGATGGAATGATAGAGGGCGAGCTCGGTGTCC
CGCGTAAGTCATCTAGTGTTGTAGGAGCAGAGGGTGACGATTGGATGGAG
ACCGAGGAACAAAATGGTGTGTTATCCCGCGGTGGCTCGGAGGCAGAGGG
TGAGCTGGCATCTGGTGTTGTTGGCGTACAGAATGATGAAGAGGGGGAGA
TCGAGGAACAGAGCGATGTGTTATCCTGCGATGGCTCGGATTTTTTTGAT
CCACTGGACGTTCGCGAGGTCGGGCGGGGTGGCGACGGAATGTNTCGGAG
GCAGAGGGTGAGCTGGCATCTGGTGTTGTTGGCGTACAGAATGATGAAGA
GGGGGAGATCGAGGAACAGAGCGATGTGTTATCCTGCGATGGCTCGGATT
TGTTGGATCCACTGGACGTTCGCGAGGTCGGGCAGGGTGGCGACGGAATG
TCCGGGTCTCCACCCCGGAGGAGCGACGCAGTTCAGAGCGATGCTGAATG
GAGGTACGATTCGTACCGCGTGATCTGGGACAGACAGTCGAACATGCAAT
TTGTTAGACTGTTTGCGTCCGAAATAGAAATAAAACCGGTGCGTTTCTGC
ATTCTACACGAAAAACGAGCGCGGTTCTCTGGCCGCCGGTGGAAAACGCC
ATAATGGTAAAAATGTCAGCCAGGCGCGGATAGTCAACGGAACGTGTTGG
ATATAGTTCAAGGTTTCTGAATGGTTTTCCCGGGCTTGTCGCGCGAAGTT
GCTCGGGCTATCTCGAAACATCAAGGCGTCTGGGACATATATTTCGCTAA
TTCACATGCCACATGTGCATTTCCGATCGAACGCGCGCATGAACCTCGTC
GTGTTGCGCAGCGGGACAATCGCCAGGGATCGAGTGTTTCGGACGATGTG
TTGGGTGAACACGCACAACTGTTGGATGGCCGTGGAGGATCTTGCGGAAC
TCATCGATGAAAACGGGGAGGACGTACGACGAATCCTGAAAGTTGGAACT
GCTTAAATCAGGCGGCAGAAGAACCACAACTATAGCCTGTTCCTACGAGC
GCACGGCATGATCGGGCGGGAATATCGTAACCGCACGCACTGGTGCTTGC
TTGGGGTCGGCCCGGTACAGATGACGCTGAGGCAATCCTCCCATCTCAGC
TACGTCATGAGCGCAGAGCCCAAGGGACCATATTTGTGAGCGCCGTCTTG
GAATTCATTTCGAGTAGGAGTGCAGACATCCCCACAAGTGACAAATTAGG
ATAGGCCTTCTGTTCCTTTGTCAGGACGGTGATCCGGTACACGGCTAAGC
GTGCTCCCCTCCCTGTCTCGTTCGTCTTCCGCATCTTCGCGCGCAAATAC
TCTCTTGTAGTTCCGGACTACAGAACCTCCAGTCGGGCGGCCCTTCGTCG
CTGCCGAAGGGGGTCGACCCGGTACGNNNNNNNNNNNNNNNNNNNNNNNN
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GGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACTTCGT
GAACTCGGCAACCAGGTTACCGTTTTTGTTTTTTACCGTTTTGGCGGTGN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCTCGAGGGCA
AAAATCAGGGGTGTAGTGTCGGATTTATTTTTTTTGTGCGCCCTTGACGA
GATACTTGATTTGTTTCACTGGGAAGTGCCTTTTTGGGAAGCAAAACCGT
ACAACACTGCTTGGACCCTCGTCGCGGATTGTACAGGCAACCACAGATAC
TGCACTTCGGGGTGCGCCAGTGCGGAACAAGGTGTGGCTCTGGAGCAACC
AAGGGTGATTGGAGAGCAGACTGACGTCTTTGACGTCGAAGAGCTTAGAG
AGGCGGATGGGGTTGCGGGTGCAGGTGGAGCGGAGGAAGACACAGGCGGG
GGCGTGAACCAGACCCTCGAACCCGTCCCCGCCGCGGAAAATGCCGCGAC
GGCGCAAACCGGCGTCAGCAAAAACGGCGGGAAGAGGACGGCCAAAGTAT
GTGTCGGGAGCAGCTTCACGGCCGCCAGCGTACGGCAGACGTTGGATGAT
GTCGTCAAGGTGGCGGGGGCGACGAGAAAGCTCTGGTCGCGCATCTTGAT
CGTAATTCGCGAGTNAGGATCTCCTGAGAAGCTTGGAAATCGCGGTTCAG
GCTGCGGAAACAGCGGCGATGGTGTGCGTCAATTCTGCGGATACCAATCG
TGTCTGTCTGGAACGCGCCTGTGCGGGATATTACGCGGTGAGTTGAAGTT
GTTGGGTTGAAACCGGTGCTAGGTTTGGAAAGATTCGCCTCAGGGTGCGT
GGCAAGAATTTGCGAGGGGAAGGGATTCAGGGATCCCAATCATGGGCCAG
CACGATTTGGAGTACTGAGCCGCCCCTCTCGCTCCCGCACTGTAATCGTT
TGCGGCCACCTGTGTAATTGTTTTGGGTGCGTTCAGGGACTGACCAACAA
ACAGAGGAGGCTGAAGGTCGTCCCTCTCGGCGGGGTGGAGGGCCCTTGGG
AGTCTCCAGGAAACCCTCAAGAGGGTAGTCGCAGTGACGTCCCCGCCAGG
CTGACGGTGGTTCCGGCCGTACAGGTAACATCTATTGATTTTTTGTCGTG
TTATTATCGGAGGGTCTAGTCGCCGATCATAGACAACTTATTCCAGCCAC
GTTCCAGTGGGCGGGACGTTTTCCCGGCAGTTTATGGGGGAATCTTAGTA
CGGCGATGGGCCGTTATTATCGCGCCCGTTTCCCCCTCCCCGAATCGTGA
GTTTTTTTTCACGAAAACGTGAAATTAAGGCGGCCGCGTTTATCGCACAC
ACCCGCCTGTGCCAACCACACCAGCCTCTCAAGTAGCCTCACCGAAGGCT
TCATCAACGGAATTAACTCTCCTTGCCGAAAGGTATACTATTGTGGCGGA
ATGCAGGAGAAAGCCTCTGCATTGCCTTATGAAAGATGCTGTGACAAATG
TTCGTCGTGTGGGGTTCTTACGGTTTGAAAAATTCCAGTTGAAAAATTGG
AATTTTCAATTCCCAGCCGAACAGAGCTCAATAAGATAGATTTGTTTGGA
CAGGATTTTGTTGGTCAGGCTCTCCAAATTTCCTGCAGGATGAAGGCAGC
GGAGGGACGAACCAACACCAGTTCCAACCGCACACCTCGAAGGCAAATCT
GCAGGAGGCCAAGACCAAAGGAGGAGAACAGTTCTTTCCTAAAAGCGTCG
GAGGAGATTTGTTCTGGAGTATGGTGGAGTGTGGCACACTAGGCCGTCCC
GCATGGCGCGCTCGTACATCTGCCACGCTCGCAGCAGGCTGTACATCCCA
AGCACGAGAAATAGGTCTTCCTCACCCACTAGCGCACGATCGTGGTGATT
TTTATGCACTCCACGTACCGCCCGCCTGCCATCCTCCCTCGTGCTTGTCG
CGCCATGGCCGTAAGCGCCCTGCTATAGAGAGCTGCTGCTCAACAAAAAC
ACAACCAGGGCGGTCTCGCTCACACGCCGCGCCCACTGAAAATAGGGTTT
CCAGCAAATTGCCCGATAGTTTTATTTTTCCTACGAAAACGGGGTTCGCA
CCGGGCCGAACCGATACAATTCGGCCCGACTCTGGACAGGATCTTTTCTA
CAGCAACTTGCAGTAAGGGAATTCGCTACAGGATAACCTGGACCGGATAA
TCAACGGCCTTACTATAGGAAATCCCGGGGGGAAACCCTAGAATATCCAG
TATTTATCGCGTCAGTCAGAGAGCGCACGGTTAAAAACGTGCTAATGTGC
AGCGAACAATATCCAAATGAGTCCGAAGATCTTTTGCTGAGTGGTTTCGG
TGAATCCGCGCAGCGTCCTATAAAAGCGTCGAACAGGAACTTGTTTTTTT
CCCCACGGTCGTTCTGAACGAAGATGGCCCCTCCATCTTACATCGGGTTT
GTAGTAACACCCGGGAGAATAACATAGGTACGTATGTACATATATTTCCA
CGGCCAAGTACTGTGTTCACTTAGTCTACCCTTCGTCACGTGGCTTGATT
AAGAGCTCGAATAAACCCCACGACAAAACGACGAGACAAGCGGCGGACAG
TTGTGCGCCTATCAATAGCCGTACGAAGATCCTCTGGTGGCCAAAATGAT
AATGCATGAAGCCCTTATCTGTTGGCCAAAACGTTCGTTTCAGCATTTTT
CCCATTCGTCTCGGTACCGCCGAAAATAGATGTCGGTTTCGCTCGCCCAC
GAGCTTCCCTGAAGAAGGTGGTGTTCATATTCCCTACATCCCCCCGTCCT
ATCGCACACATTTGTCGCTGTATCGTCCGCTGGCTCGCCCTCTTCAGTGA
AGTTTACGGCGTCGTTGGCGCCAAAGGCCTATGAGATGAACAAGGCTACG
TTCTTCCATTGTTCAACAGCCTCGGGGAAACCCTCGATCTCATCGCGGAG
CAGAACTTGCAGGAGAAGGCCTTCAATCAGACGTGAGCGTAGTTTCTCTC
CTAGGACGACAGCCAACCGAGCGTCTCCGACGACATGCTTCACCGGCCAT
GCCCAGTGAATTTATGCGCACCAAAAGTATTTATCGCCCAATTTATGCGC
ACCAATTTGTTGCTCAATAGGCTTCGGGCCATGATTTTCCTGTCGCTGTG
TCGGGGGTGTCTGAAGTTGGAACGTTTCGGGCTTTTGATTCACTCTCATG
TCCCTCCACTCCCCCTCCGCTTGCAGGGTGCGACACCATTTGGGCCGTGT
CTTCGACAAGGTCGTCAAGGCTAGGAATCTGACAGGGGAGATGATCACGT
CGAAAGCGATCGCGAACCATATGTTGAAGCCGTACCTGACGGCCTCGAGT
CCTGCATCGGCGGCGGTTGGATTGGCAGACGGGGCAAGGGACGCCGGAAC
AGCAAGAGAGGGTTCTGGATAA

Coding sequence (CDS) from alignment at Scaffold_70:345860..354681-

>EsuBft1029_7a-0001 ID=EsuBft1029_7a-0001|Name=EsuBft1029_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1692bp|location=Sequence derived from alignment at Scaffold_70:345860..354681- (Ectocarpus subulatus male Bft15b)
ATGGTTGGCTGGCGACTAGGTGCAATTCAGCAATTTCTAGGATCGGTAGA
GCCCAAAGAGCTTGGAAGCACGAGGCGCCAAACGAATCTGTCGAGACCTC
TTCAGCTTTTGGCGTCGGTGGGGATGGATTTCAAGGAAAACTATGTTGCC
GTAACTGGGGGCGAAGGGGGCGTTAGCCCCCCATGGGGTGGCTCTAAGCA
CGCCGACATAGGGGAGCCTCGCGAGCGGGGAGAACCTCGACCCGACAACT
TCCAGAAATCCACTAGGGATGACCGACCTGCCTCCCCCGAAAGCGAGAGA
GGGGAGTTCAGCGCAGATGGAATGATAGAGGGCGAGCTCGGTGTCCCGCG
TAAGTCATCTAGTGTTGTAGGAGCAGAGGGTGACGATTGGATGGAGACCG
AGGAACAAAATGGTGTGTTATCCCGCGGTGGCTCGGAGGCAGAGGGTGAG
CTGGCATCTGGTGTTGTTGGCGTACAGAATGATGAAGAGGGGGAGATCGA
GGAACAGAGCGATGTGTTATCCTGCGATGGCTCGGATTTTTTTGATCCAC
TGGACGTTCGCGAGGTCGGGCGGGGTGGCGACGGAATGTNTCGGAGGCAG
AGGGTGAGCTGGCATCTGGTGTTGTTGGCGTACAGAATGATGAAGAGGGG
GAGATCGAGGAACAGAGCGATGTGTTATCCTGCGATGGCTCGGATTTGTT
GGATCCACTGGACGTTCGCGAGGTCGGGCAGGGTGGCGACGGAATGTCCG
GGTCTCCACCCCGGAGGAGCGACGCAGTTCAGAGCGATGCTGAATGGAGG
CAACCACAGATACTGCACTTCGGGGTGCGCCAGTGCGGAACAAGGTGTGG
CTCTGGAGCAACCAAGGGTGATTGGAGAGCAGACTGACGTCTTTGACGTC
GAAGAGCTTAGAGAGGCGGATGGGGTTGCGGGTGCAGGTGGAGCGGAGGA
AGACACAGGCGGGGGCGTGAACCAGACCCTCGAACCCGTCCCCGCCGCGG
AAAATGCCGCGACGGCGCAAACCGGCGTCAGCAAAAACGGCGGGAAGAGG
ACGGCCAAAGGACTGACCAACAAACAGAGGAGGCTGAAGGTCGTCCCTCT
CGGCGGGGTGGAGGGCCCTTGGGAGTCTCCAGGAAACCCTCAAGAGGGTA
GTCGCAGTGACGTCCCCGCCAGGCTGACGGTGGTTCCGGCCGTACAGGAT
GAAGGCAGCGGAGGGACGAACCAACACCAGTTCCAACCGCACACCTCGAA
GGCAAATCTGCAGGAGGCCAAGACCAAAGGAGGAGAACAGTTCTTTCCTA
AAAGCGTCGGAGGAGATTTGTTCTGGAGTATGGTGGAGTGTGGCACACTA
GGCCGTCCCGCATGGCGCGCTCGTACATCTGCCACGCTCGCAGCAGGCTA
TGAACAAGGCTACGTTCTTCCATTGTTCAACAGCCTCGGGGAAACCCTCG
ATCTCATCGCGGAGCAGAACTTGCAGGAGAAGGCCTTCAATCAGACGGTG
CGACACCATTTGGGCCGTGTCTTCGACAAGGTCGTCAAGGCTAGGAATCT
GACAGGGGAGATGATCACGTCGAAAGCGATCGCGAACCATATGTTGAAGC
CGTACCTGACGGCCTCGAGTCCTGCATCGGCGGCGGTTGGATTGGCAGAC
GGGGCAAGGGACGCCGGAACAGCAAGAGAGGGTTCTGGATAA