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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FL61 |
| ProteomeId | EsuBft1029_4 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 93 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.85e-63 |
| EggNOG OGs | KOG2434@1|root,KOG2434@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | RRN3 |
| KEGG ko | ko:K15216 |
| GOs | GO:0000120,GO:0000182,GO:0000976,GO:0001013,GO:0001042,GO:0001046,GO:0001047,GO:0001067,GO:0001163,GO:0001164,GO:0001167,GO:0001169,GO:0001179,GO:0001181,GO:0001188,GO:0001701,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007028,GO:0007275,GO:0007399,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009303,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0019899,GO:0022008,GO:0022607,GO:0022613,GO:0023051,GO:0023057,GO:0030154,GO:0030718,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036099,GO:0042254,GO:0042592,GO:0042790,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0098781,GO:0120035,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901797,GO:1902253,GO:1902254,GO:1902531,GO:1902532,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000026,GO:2000112,GO:2000142,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243 |
| Description | rna polymerase i-specific transcription initiation factor |
| COG category | O |
| BRITE | ko00000,ko03021 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1029_4a-0001 ID=EsuBft1029_4a-0001|Name=EsuBft1029_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=931bp|location=Sequence derived from alignment at Scaffold_70:312591..317018- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGGAGACCCGACGAGCGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATTTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCACGAGGCTGATGAAGGCTCAAG
ACGATGGCAGCCGACATCAAAGAAGCACCAAATTCTCGGGCGCCAGGACG
CCCGCCGGCGCCGGGGACTCGGACTCCTCTGTCACCAGCGACAGCAGCGA
TGACGAATCTGTTTCGTCCGAAGAAGACGACGACGACGATCGAAATATCA
ACGACATGGACGCGAGCTCCATGAGTTTCCGGTACGGGGCCAGCGGCCTC
CGTGCCCGGTCTCTTGGCGAACGAAAAGAAGCCACCACAAAGAACAGCAA
GGCCAAGGGCAGGCTTGCCAAGAAGCGTAACGACGCGGGTGAGAGTTCCG
AAGGTGCTTCTTCTTCGTCGGAGGAAGAGGGGGATGATGAGGCAGGCCGC
ATGTCGAGAAAAATGGCCGACACGTACATCACGGAGAGCATGTCCGTCAC
CCCTGCGAGCTCCGTCGCCGTGGGGAGCCTCATGGGCAGGAGCCTGGGTC
AGGCCATGTCCTCGTCGTTTGCCGACGATGGTCTCGTGTGGGGGACGGGC
GCCGGGGGCGCGGCCGGAACTCCCGACGATGCGTTTTTCCACGAGAACGT
GTCGCCATGCCCGTCGCCCCCGTTGGCGGAGGCGGCTATCAGCGGCCGCT
CTAGACCGTTAGACATCGGCGTGCCTTCAAAGAGGACTTTGTTTTGAATG
GCTTGTGGCGGCGATGGGTGTCCCCTTGGAT back to topprotein sequence of EsuBft1029_4a-0001 >EsuBft1029_4 ID=EsuBft1029_4|Name=EsuBft1029_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGV
HGVGIAIKETMWESVGEEGRTVECISTRLMKAQDDGSRHQRSTKFSGART
PAGAGDSDSSVTSDSSDDESVSSEEDDDDDRNINDMDASSMSFRYGASGL
RARSLGERKEATTKNSKAKGRLAKKRNDAGESSEGASSSSEEEGDDEAGR
MSRKMADTYITESMSVTPASSVAVGSLMGRSLGQAMSSSFADDGLVWGTG
AGGAAGTPDDAFFHENVSPCPSPPLAEAAISGRSRPLDIGVPSKRTLF back to topmRNA from alignment at Scaffold_70:312591..317018- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1029_4a-0001 ID=EsuBft1029_4a-0001|Name=EsuBft1029_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4428bp|location=Sequence derived from alignment at Scaffold_70:312591..317018- (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGGAGACCCGACGAGCGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATTTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCACGAGGCTGATGAAGGTTCGTC
TACAAATTGGCCGGCGAGTAACTTTCGTGGTGGGGTACGCCCCCACGGAA
ACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGGGCACTGCT
GTAGAAGCGAGTAGGGCGGCCGAGGCAGCGCTTGTGGCGAACTATGTACC
CGGCTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCCGTATGCTATACTCC
TTTGTGTGTATCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCCTTT
TTCATGACCTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGAGCTCGCTT
TGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCNNNNNNNN
NNNNNNTTTTTTCGGCGGGTGTGGGAAGCGTCCTCCTTTATTTTTCTGTT
ATTTTTGTTTTGTTTTATTTTGATCGGTGTCCGAGGGCTCTTTTCTGGAA
CGGTCGGTGCGATACCTGTTCTTTTCTTTCTATCATTTTGTTTTCTTTTT
CCGAGTGGTTTGTACCCTTTTTTTTTTTTCTCGCGGCGTCGTATGTGCCG
GGTTTTGAGACCACGGGCTCCCCATTTTTGTGGACTTAAGAGCTAATGTG
AGAAACAACAACAACAACAACAACAACAACGTTACCACAGAGAATATTCA
ACTCAGAAACGCTTCTGTCGACCGCGCTTGCGCCACAACCCAACACAACC
GGCACGTTCAACACCCAAGCGCATAAAGCCCGTTTCCAACTTACAATGAA
CAGACACCCAACGCCCCAAACATGATGTTAATGGCGACAGGCTCAAGACG
ATGGCAGCCGACATCAAAGAAGCACCAAATTCTCGGGCGCCAGGACGCCC
GCCGGCGCCGGGGACTCGGACTCCTCTGTCACCAGCGACAGCAGCGATGA
CGAATCTGTTTCGTCCGAAGAAGACGACGACGACGATCGAAATATCAACG
ACATGGACGCGAGCTCCATGAGTTTCCGGTACGGGGCCAGCGGCCTCCGT
GCCCGGTCTCTTGGCGAACGAAAAGAAGCCACCACAAAGAACAGCAAGGC
CAAGGGCAGGCTTGCCAAGAAGCGTAACGACGCGGGTGAGAGTTCCGAAG
GTGCTTCTTCTTCGTCGGAGGAAGAGGGGGATGATGAGGCAGGCCGCATG
TCGAGAAAAATGGCCGACACGTACATCACGGAGAGCATGTCCGTCACCCC
TGCGAGCTCCGTCGCCGTGGGGAGCCTCATGGGCAGGAGCCTGGGTCAGG
CCATGTCCTCGTCGTTTGCCGACGATGGTCTCGTGTGGGGGACGGGCGCC
GGGGGCGCGGCCGGAACTCCCGACGATGCGTTTTTCCACGAGAACGTGTC
GCCATGCCCGTCGCCCCCGTTGGCGGAGGCGGCTATCAGCGGCCGCTCTA
GACCGTTAGACATCGGCGTGCCTTCAAAGAGGACTTTGTTTTGAATGGCT
TGTGGCGGCGATGGGTGTCCCCTTGGAT back to topCoding sequence (CDS) from alignment at Scaffold_70:312591..317018- >EsuBft1029_4a-0001 ID=EsuBft1029_4a-0001|Name=EsuBft1029_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_70:312591..317018- (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGGAGACCCGACGAGCGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATTTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCACGAGGCTGATGAAGGCTCAAG
ACGATGGCAGCCGACATCAAAGAAGCACCAAATTCTCGGGCGCCAGGACG
CCCGCCGGCGCCGGGGACTCGGACTCCTCTGTCACCAGCGACAGCAGCGA
TGACGAATCTGTTTCGTCCGAAGAAGACGACGACGACGATCGAAATATCA
ACGACATGGACGCGAGCTCCATGAGTTTCCGGTACGGGGCCAGCGGCCTC
CGTGCCCGGTCTCTTGGCGAACGAAAAGAAGCCACCACAAAGAACAGCAA
GGCCAAGGGCAGGCTTGCCAAGAAGCGTAACGACGCGGGTGAGAGTTCCG
AAGGTGCTTCTTCTTCGTCGGAGGAAGAGGGGGATGATGAGGCAGGCCGC
ATGTCGAGAAAAATGGCCGACACGTACATCACGGAGAGCATGTCCGTCAC
CCCTGCGAGCTCCGTCGCCGTGGGGAGCCTCATGGGCAGGAGCCTGGGTC
AGGCCATGTCCTCGTCGTTTGCCGACGATGGTCTCGTGTGGGGGACGGGC
GCCGGGGGCGCGGCCGGAACTCCCGACGATGCGTTTTTCCACGAGAACGT
GTCGCCATGCCCGTCGCCCCCGTTGGCGGAGGCGGCTATCAGCGGCCGCT
CTAGACCGTTAGACATCGGCGTGCCTTCAAAGAGGACTTTGTTTTGA back to top
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