EsuBft1743_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	7176.CPIJ014762-PA
ProteomeId	EsuBft1743_3
Protein domains	PTHR14155
Protein domains	SSF57850
Protein domains	IPR001841
Protein domains	IPR013083
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	367
Hectar predicted targeting category	other localisation
Evalue	6.5e-09
EggNOG OGs	KOG1280@1\|root,KOG1280@2759\|Eukaryota,39BPD@33154\|Opisthokonta,3CFR3@33208\|Metazoa,3DX5G@33213\|Bilateria,42C4S@6656\|Arthropoda,3SWF6@50557\|Insecta,459VF@7147\|Diptera,45M3C@7148\|Nematocera
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Drought induced 19 protein (Di19), zinc-binding
COG category	O

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:274663..279478+
coding sequence from alignment at Scaffold_70:274663..279478+

spliced messenger RNA

>EsuBft1743_3a-0001 ID=EsuBft1743_3a-0001|Name=EsuBft1743_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3673bp|location=Sequence derived from alignment at Scaffold_70:274663..279478+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TACTTGACCCCTGTCCGTCCTTCTTCACGTAGCCACTACTTGTCCGATAG
AAGACACTCCCTGTAAACCTGACGATGCCCCCCCCCCAAACCAGCGACGC
CTGTTCGCGCCTCCTCCTGGAAGCCTTGCGCATGATAGGCTCGCGCCAGA
GGCAGGGTCGCGGAGACCCTCAGCCCGCCTCCGCCGCGATCATGGAAGGC
GTTTGGACCGGCCGTTGGGATCCCGCCAAGAACGGCGGCTCCAGCCGCGG
CGACGCCACGCAAGGGCGGCACGCCAGGAGCCCCGGCAACGGCGACGGTA
ACCCGCGCTGCGCCGTGTGCCTCGAAGCGGTCGGCGGGGGGGAGCCGACC
GTCGACGGTGGTGCTCTCGGGCGGGAGGGCGGCGGGAGGGCGGCGGCTGC
TGCTGATTGGACGGCGGACATCGGGTCGGACGAGGGTCTCCGCGCCGAGA
CGATGGAGAGTGTCCACGCGAGCAGGAGCTTTGCGTACCTCCCGTGCGGG
CACCGTTTCCACACGCACTGCATCGGGCGCTGGCTGGTACACAGCTCGTC
CTGCCCGTCTTGCCGCAGCCAAGTGGAAGAGGAAACCATCCCAGCCCCCG
TTGCCACGGACGCCGCCGCTCCTCCGTTGCCGCCGGACGAGGCAAGAGGA
CACGGTGCGCGAGCAGTCGGCGGTTCTCCTGTCGCCGCCTCGCGAGACAG
ACTGTCCACACCCGAGGCGGAGGCGGCGGAAGTCGCGGACTCTGTCCTGA
CGGCAGCGGCCGACTCTGTCTTGACGGCAGCCACGCGCGGGTTGCCGGTC
AGGCTCAGCCTGGGGGCGACGCAGATGGTCACGTGAGGTTCGTCAGGGTG
AATAGGCGAGGGGGGGAGGGTGCCGCCGCCGGCGGTGGAGGGGGCTCCGC
GGTTGCTGTGGAAGAATGCGCGCCCTTTTGCTGAGCCGTACCACGTGGCA
ATCAACGACTTTGGGTGGTTGAGTCCCAGAGTTTATTTTTTTTCGTCGAG
TGGTCAAAGCTTTCATGGTCGTTGCGGTGCCGTGGTGGATACCATTCGTT
GACAGTCGGGGGTGGTTAGTATGGGTAAGAGGAAGTGCGGGAATAGGAAG
GAGAATTCGATGTATTGTTCACGGCCGGGGTGACTATGTTGTGGCGGGGA
GAATGAATGTATTTTCGAGGTGCGAGTTGGAGGTGGGACGGGGGGAGGGG
GGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGG
GGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTATCGCTG
GACGAGTGCGTTTTCTGAGCACACCATATTGTTTTCGTTTCGGTGAGCAA
AAACAACGCCTCTGTCTGCGTGTTTTTGCGTGTGCGTATGCGTGTGTATA
TCCAGCAAGCGCAGCTCAGACGCTTCCCGCCTTGTTGGAAAAACCGGCGT
ATTGCACCCCTTCCTCCTGTCTAGTTCCCATGTCCCCTACTTCGCGTGGA
TGTATGTTCCAAGCACGGGGAGCGCGCTTTTTTTGGAACGAAACGTAAAT
TGGAGGAGTGTGGAGGAGGTAACAGACACAATGTTTGGGCACGCACGTGA
GTACGTCAAGTATAAATGGGTTTTTGATGTTACGGGCGTGTGCAAGTAAG
TACAGGCGCGCGTGCTGCGATGCCATTTTTTTTTTTTGCTTCTAGATTGG
CTGTCTTTTATGTTGTCCTGCATGCTGTGTGTTGTAGAGCCCACCAGGTT
TCCTCACACGCAAGTTTTTTTTTGTTATATCGTCTCTATGCGTAGTGTGT
TGTATAAGGCGCGCGGTGAGAGCCTGCCTGTCGATATTGTATTCCGTCGT
GGTTTGATCGAGCTGCTATTTGGGCGTGAGGGAGGGAGAGAGTTAATTAG
GTGCAATCAACCCATCGGTAAAACAAGCGCGGACGCGCGCGCTGTTGCTC
TCACGTTTATGTATTGGTTTCCGATTTCTACATAGTCCGTCTCTGGATTC
ATTCGAAGCGGTGTTAGTATGTTGTCCCAGCTGCTCAAGCGATGTGCAGT
TTTTTTTTCTAGTGAAAAACGTGACCGCAGTGAGCGAACTACACCAACCA
GCCAATCAATGTTTCTTTGGAGTATCACGACGTCGATACTACGTGTTGTT
GAAATATGTAGTGTGTGTTGAATGCGAAGATGCCGTATTTATTACCAAAC
TTGCAGGAGTCCTGTACGCAGAAGCGTTTTGATAAAAAAGCTACTTGTCG
TCGATAAAATTCCGCGCGCGAAAGATTTCCATTCAGGGTGGTATTTTTGT
TTTTTCTCCCATCATTGGACTCTGTCGTCTGCCCATTGACTCCACTTGTA
CTAGCTAGACGACCCAACCGGGGTCAGATGGGAGGGGAGGACTGGACCCC
CTCCTGCGGTTCATACCTGAGGTATTTTTATCGCGAGAAGGGTACAGCAC
TCCCTTCCCTCGCGACTTACGAAGTCGATTATGGTTTACTAACAACGAGC
TTTGCAGCGCGTCGCTTTCATCCTGGACCAGGATTATTTAGTGAGAACAC
TCACTCTGCCGGGACTCGAACCCATGACCTGGCCCTTAGCAGGCTGCGAG
GTTACCCACTAGACCACCGGGGCGTATGTAAAGTATTAGTCGGTTTGGGG
GGTGGAGGATGGGCATTATGACAATACAAGTAAAGCTGGTGTCGTATATA
TTATGTGTGTATTGTGTGTTTTCGTCCTATTTATTATGGCGACAGTCCCC
CCATTTTTCGTGGTGAGACGTGTACTACACTTTTCAGTGTTTTTTTTCGT
GCAACTGCAACCATACAGGGTCACACAGGAGGAGGGGGTAAACACCAGTG
TTTTTTTCTTCTTTTCATTTATTTTCATGCCCCACCTTCCTCCTGCGGTG
CGTGCTGAATTTTGTTTTCATCGCGAGAAAAAGGGTCCAGCCGTCCCTTC
CCTCGCCAACGGTGCTAACGTCGAAGTTTGGTACTCACGAGAGCTTGTCA
GCTTTGTTTTGCTTTCACCCGCACATTTCGTAAAATTTTTACCCCATGGG
GATTCGAACTCACGACCTTCGCAACTACCTGGTAGCGGATTACGAGGATA
CTACTAGACTTTAGACCACCGGGGCGACCGGTTACGTATGATGCATGGCA
AACATTTATATTTTGTTGGAAAGCTTGGGTGGGTCGTGAGCTGCCGTTGA
ATTTATTTTCGTTTTCGACCTCCCGCAAGAAAGGAAGGGTTCGATCAGCG
CCCACTGGTCCACGAGGTCGACTTGAATCGTCAAGCAAACACCAAGAAGC
TGCGACTTTTATTTTTGTAACTCGTTCGGTTCATTTCTATTTTGAGCGCC
CCCCCTTTTTCTTTTTTTCGGGGGTCGCCCAATTAATTTTTGTGTTGTCT
GTTTGTTGGAGAAAGTCCCAGTCAGTGTAGGGTCAACATGCATGATGGTT
GGAGAAAATTTCACTTTTCTTCTTTTTTAGCGAGAAATGATGCCGCGTTA
TGTGGGGAAGAGGGCATCATCGGTGATGTTGTGAGTGTGTCGGCCGAAGA
CTTGGTGCTACAGCGTGCCGAAAAAAGAATATCGTGACTTTTTTCTCATC
AGTTTGTTCTGTGGTGGCGCTTA

protein sequence of EsuBft1743_3a-0001

>EsuBft1743_3 ID=EsuBft1743_3|Name=EsuBft1743_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=253bp
MPPPQTSDACSRLLLEALRMIGSRQRQGRGDPQPASAAIMEGVWTGRWDP
AKNGGSSRGDATQGRHARSPGNGDGNPRCAVCLEAVGGGEPTVDGGALGR
EGGGRAAAAADWTADIGSDEGLRAETMESVHASRSFAYLPCGHRFHTHCI
GRWLVHSSSCPSCRSQVEEETIPAPVATDAAAPPLPPDEARGHGARAVGG
SPVAASRDRLSTPEAEAAEVADSVLTAAADSVLTAATRGLPVRLSLGATQ
MVT

mRNA from alignment at Scaffold_70:274663..279478+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1743_3a-0001 ID=EsuBft1743_3a-0001|Name=EsuBft1743_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4816bp|location=Sequence derived from alignment at Scaffold_70:274663..279478+ (Ectocarpus subulatus male Bft15b)
TACTTGACCCCTGTCCGTCCTTCTTCACGTAGCCACTACTTGTCCGATAG
AAGACACTCCCTGTAAACCTGACGATGCCCCCCCCCCAAACCAGCGACGC
CTGTTCGCGCCTCCTCCTGGAAGCCTTGCGCATGATAGGCTCGCGCCAGA
GGCAGGGTCGCGGAGACCCTCAGCCCGCCTCCGCCGCGATCATGGAAGGC
GTTTGGACCGGCCGTTGGGATCCCGCCAAGAACGGCGGCTCCAGCCGCGG
CGACGCCACGCAAGGGCGGCACGCCAGGAGCCCCGGCAACGGCGACGGTA
ACCCGCGCTGCGCCGTGTGCCTCGAAGCGGTCGGCGGGGGGGAGCCGACC
GTCGACGGTGGTGCTCTCGGGCGGGAGGGCGGCGGGAGGGCGGCGGCTGC
TGCTGATTGGACGGCGGACATCGGGTCGGACGAGGGTCTCCGCGCCGAGA
CGATGGAGAGTGTCCACGCGAGCAGGAGCTTTGCGTACCTCCCGTGCGGG
CACCGTTTCCACACGCACTGGTGAGGAGGGGTGTATGCTTGTTGGATAGG
AACGCTCTCGGTGGGCGCGGCGCTTTTGATGAGCACCGTTTGATGGGGTT
TGCGTCACATTAAGGTTTCCTGCTCTGTAATTGGGCAAAATGCTTCCTCG
GAAACGTGTGTTTGTTTGATGTAGTCGCGTGTCGGAGATACAACAGAGAA
TAACGTCTGGCGCGGAGCTGACACGCGGGAGGACGCAGCCTGCCAGGTCT
CAGCCTAGCCGCCTCGAGCTCCTTCTCGAGCATGTTTGACTGTTTTCTCC
TCTCTCTCTCTCTGTGTCTCCTGTCTGGCTATTCATCTTTGTTCTTCTCT
GTCTACCTGACTGTCTGTCTTTCTCCTTCCGTCTTTGCACGATAGTGATT
TGTACAACGTACTTTTTCCCTCCCTTCCCTAGCATGCCATGGTCCTGTGG
GAAAAATGTTCCGTCTTCTCGAGGACGGGTGGTCAATGGTCTAAACGCCA
AGGGGTGCAATACAAAAGACTGCCCCCCCCCCCGTGCAAGCCATCGGCTC
TCCATCGCAAACCGAGTTGGCCGACGAAGTTACACCAAACAGGGTTTTCG
CCTGATTGAGAGCGGAGTATACGATTGAGAGCGGGAGCCAAAAAAATTGA
AATTTCGGGTCCAGACGCCTCTTGCCATTTCTTGGGAAGTAGGGGGCGGG
CTCTTCCAAGAAGCGGCGCAAATTGAAGGTCTCATCAGCAGCGTCACGAG
CATATGCGTGTCATCGCGATCGGATGCTGCAGCTAGGAGCTAGACAAGTT
GCTAGATTTCCCCAGATTGGCTATTCCTGCCTCAAACTGTTTCAGGGCGA
TTTGATCGCGGGCGGTGGGCTCTGCTGTAGATTCTGCTCCCCGCTGTAGC
TCCACAACGAGAGACGCCCACAGGATGACCAGGGTATCGGCTCGTAGCTA
CGAGCTAGGCCTTCAATTAAAGTCACGCAGCAAGCGCCACTTCTCAGCGG
TAGTCCAGCTACAGCGCATCGCGTAATCTCGCTCTCAATCAGAAACTTCG
CTCTCAATCACACGAAAACCTTTTTACCAGCGCCCCTCGATAAACTTGTC
TTCCCCGCCCCCTCTAATTTATTTGTTTTTCCTCCCTGCTGCTCATGGAA
CGTGCATGCACAGCATCGGGCGCTGGCTGGTACACAGCTCGTCCTGCCCG
TCTTGCCGCAGCCAAGTGGAAGAGGAAACCATCCCAGCCCCCGTTGCCAC
GGACGCCGCCGCTCCTCCGTTGCCGCCGGACGAGGCAAGAGGACACGGTG
CGCGAGCAGTCGGCGGTTCTCCTGTCGCCGCCTCGCGAGACAGACTGTCC
ACACCCGAGGCGGAGGCGGCGGAAGTCGCGGACTCTGTCCTGACGGCAGC
GGCCGACTCTGTCTTGACGGCAGCCACGCGCGGGTTGCCGGTCAGGCTCA
GCCTGGGGGCGACGCAGATGGTCACGTGAGGTTCGTCAGGGTGAATAGGC
GAGGGGGGGAGGGTGCCGCCGCCGGCGGTGGAGGGGGCTCCGCGGTTGCT
GTGGAAGAATGCGCGCCCTTTTGCTGAGCCGTACCACGTGGCAATCAACG
ACTTTGGGTGGTTGAGTCCCAGAGTTTATTTTTTTTCGTCGAGTGGTCAA
AGCTTTCATGGTCGTTGCGGTGCCGTGGTGGATACCATTCGTTGACAGTC
GGGGGTGGTTAGTATGGGTAAGAGGAAGTGCGGGAATAGGAAGGAGAATT
CGATGTATTGTTCACGGCCGGGGTGACTATGTTGTGGCGGGGAGAATGAA
TGTATTTTCGAGGTGCGAGTTGGAGGTGGGACGGGGGGAGGGGGGGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGTGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTATCGCTGGACGAGT
GCGTTTTCTGAGCACACCATATTGTTTTCGTTTCGGTGAGCAAAAACAAC
GCCTCTGTCTGCGTGTTTTTGCGTGTGCGTATGCGTGTGTATATCCAGCA
AGCGCAGCTCAGACGCTTCCCGCCTTGTTGGAAAAACCGGCGTATTGCAC
CCCTTCCTCCTGTCTAGTTCCCATGTCCCCTACTTCGCGTGGATGTATGT
TCCAAGCACGGGGAGCGCGCTTTTTTTGGAACGAAACGTAAATTGGAGGA
GTGTGGAGGAGGTAACAGACACAATGTTTGGGCACGCACGTGAGTACGTC
AAGTATAAATGGGTTTTTGATGTTACGGGCGTGTGCAAGTAAGTACAGGC
GCGCGTGCTGCGATGCCATTTTTTTTTTTTGCTTCTAGATTGGCTGTCTT
TTATGTTGTCCTGCATGCTGTGTGTTGTAGAGCCCACCAGGTTTCCTCAC
ACGCAAGTTTTTTTTTGTTATATCGTCTCTATGCGTAGTGTGTTGTATAA
GGCGCGCGGTGAGAGCCTGCCTGTCGATATTGTATTCCGTCGTGGTTTGA
TCGAGCTGCTATTTGGGCGTGAGGGAGGGAGAGAGTTAATTAGGTGCAAT
CAACCCATCGGTAAAACAAGCGCGGACGCGCGCGCTGTTGCTCTCACGTT
TATGTATTGGTTTCCGATTTCTACATAGTCCGTCTCTGGATTCATTCGAA
GCGGTGTTAGTATGTTGTCCCAGCTGCTCAAGCGATGTGCAGTTTTTTTT
TCTAGTGAAAAACGTGACCGCAGTGAGCGAACTACACCAACCAGCCAATC
AATGTTTCTTTGGAGTATCACGACGTCGATACTACGTGTTGTTGAAATAT
GTAGTGTGTGTTGAATGCGAAGATGCCGTATTTATTACCAAACTTGCAGG
AGTCCTGTACGCAGAAGCGTTTTGATAAAAAAGCTACTTGTCGTCGATAA
AATTCCGCGCGCGAAAGATTTCCATTCAGGGTGGTATTTTTGTTTTTTCT
CCCATCATTGGACTCTGTCGTCTGCCCATTGACTCCACTTGTACTAGCTA
GACGACCCAACCGGGGTCAGATGGGAGGGGAGGACTGGACCCCCTCCTGC
GGTTCATACCTGAGGTATTTTTATCGCGAGAAGGGTACAGCACTCCCTTC
CCTCGCGACTTACGAAGTCGATTATGGTTTACTAACAACGAGCTTTGCAG
CGCGTCGCTTTCATCCTGGACCAGGATTATTTAGTGAGAACACTCACTCT
GCCGGGACTCGAACCCATGACCTGGCCCTTAGCAGGCTGCGAGGTTACCC
ACTAGACCACCGGGGCGTATGTAAAGTATTAGTCGGTTTGGGGGGTGGAG
GATGGGCATTATGACAATACAAGTAAAGCTGGTGTCGTATATATTATGTG
TGTATTGTGTGTTTTCGTCCTATTTATTATGGCGACAGTCCCCCCATTTT
TCGTGGTGAGACGTGTACTACACTTTTCAGTGTTTTTTTTCGTGCAACTG
CAACCATACAGGGTCACACAGGAGGAGGGGGTAAACACCAGTGTTTTTTT
CTTCTTTTCATTTATTTTCATGCCCCACCTTCCTCCTGCGGTGCGTGCTG
AATTTTGTTTTCATCGCGAGAAAAAGGGTCCAGCCGTCCCTTCCCTCGCC
AACGGTGCTAACGTCGAAGTTTGGTACTCACGAGAGCTTGTCAGCTTTGT
TTTGCTTTCACCCGCACATTTCGTAAAATTTTTACCCCATGGGGATTCGA
ACTCACGACCTTCGCAACTACCTGGTAGCGGATTACGAGGATACTACTAG
ACTTTAGACCACCGGGGCGACCGGTTACGTATGATGCATGGCAAACATTT
ATATTTTGTTGGAAAGCTTGGGTGGGTCGTGAGCTGCCGTTGAATTTATT
TTCGTTTTCGACCTCCCGCAAGAAAGGAAGGGTTCGATCAGCGCCCACTG
GTCCACGAGGTCGACTTGAATCGTCAAGCAAACACCAAGAAGCTGCGACT
TTTATTTTTGTAACTCGTTCGGTTCATTTCTATTTTGAGCGCCCCCCCTT
TTTCTTTTTTTCGGGGGTCGCCCAATTAATTTTTGTGTTGTCTGTTTGTT
GGAGAAAGTCCCAGTCAGTGTAGGGTCAACATGCATGATGGTTGGAGAAA
ATTTCACTTTTCTTCTTTTTTAGCGAGAAATGATGCCGCGTTATGTGGGG
AAGAGGGCATCATCGGTGATGTTGTGAGTGTGTCGGCCGAAGACTTGGTG
CTACAGCGTGCCGAAAAAAGAATATCGTGACTTTTTTCTCATCAGTTTGT
TCTGTGGTGGCGCTTA

Coding sequence (CDS) from alignment at Scaffold_70:274663..279478+

>EsuBft1743_3a-0001 ID=EsuBft1743_3a-0001|Name=EsuBft1743_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=762bp|location=Sequence derived from alignment at Scaffold_70:274663..279478+ (Ectocarpus subulatus male Bft15b)
ATGCCCCCCCCCCAAACCAGCGACGCCTGTTCGCGCCTCCTCCTGGAAGC
CTTGCGCATGATAGGCTCGCGCCAGAGGCAGGGTCGCGGAGACCCTCAGC
CCGCCTCCGCCGCGATCATGGAAGGCGTTTGGACCGGCCGTTGGGATCCC
GCCAAGAACGGCGGCTCCAGCCGCGGCGACGCCACGCAAGGGCGGCACGC
CAGGAGCCCCGGCAACGGCGACGGTAACCCGCGCTGCGCCGTGTGCCTCG
AAGCGGTCGGCGGGGGGGAGCCGACCGTCGACGGTGGTGCTCTCGGGCGG
GAGGGCGGCGGGAGGGCGGCGGCTGCTGCTGATTGGACGGCGGACATCGG
GTCGGACGAGGGTCTCCGCGCCGAGACGATGGAGAGTGTCCACGCGAGCA
GGAGCTTTGCGTACCTCCCGTGCGGGCACCGTTTCCACACGCACTGCATC
GGGCGCTGGCTGGTACACAGCTCGTCCTGCCCGTCTTGCCGCAGCCAAGT
GGAAGAGGAAACCATCCCAGCCCCCGTTGCCACGGACGCCGCCGCTCCTC
CGTTGCCGCCGGACGAGGCAAGAGGACACGGTGCGCGAGCAGTCGGCGGT
TCTCCTGTCGCCGCCTCGCGAGACAGACTGTCCACACCCGAGGCGGAGGC
GGCGGAAGTCGCGGACTCTGTCCTGACGGCAGCGGCCGACTCTGTCTTGA
CGGCAGCCACGCGCGGGTTGCCGGTCAGGCTCAGCCTGGGGGCGACGCAG
ATGGTCACGTGA