Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1352_9 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-TM |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 93 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1352_9a-0001 ID=EsuBft1352_9a-0001|Name=EsuBft1352_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=930bp|location=Sequence derived from alignment at Scaffold_70:212926..214044+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGCATCGTCCCTGGTCGCCGCGTTGGCGCCGGACGGTTGCAGCGGCGGCG
GTAGCGACATCGATGACGGGGGGTACGGCAGCGGCGACAGCAGCAGCGGC
GTCCCCGGTCGCCGCGTTGGCGTCGGGTGTCCAGACGGCCGCAACGGGGG
CGGCGGCGGCGGCACCGGTGACGGACGTATGTGACGAAGAGTTGGAGGAA
GCGGTTGCGAGGAGAGCGGCGGCAATGTTAGCGGCGATGAGGGGCTGGAT
GAAACCTGGAGTGGAGCCCCGACGCACCCTTTCGACCCCGGTAAGACATC
TTCGCGTGGCGCGAGGAGACGGGGGGCGGTACCAGGGGTTGCGTACCCCT
TCGATAGGGGCAGGAACGGGAGTGGCAGCTCCGGCGGCGGCAATGGCGGC
AGCCGCAGCAGCGACGAGAGTGGCGACTTCGGCCAGAGCTCCGGCGGCGA
CACCGGCGGCAGCAGGAGCAGCGAAGGAAGTGGTGACTTCGGCCATAGCT
CCGACGGCGACACCGGCGGCAGGGGCGGCTTCGGCCAGAACCTCGTCGGC
GGCAGCGGCGACAACGGCGGCGGTGGTAGAGGCGGTAGAAGCGACGTCAC
CGGCAGCCGTGTTGGCGCTGGAACTCATGACGGTCGTGGCGGCGGGGGAA
CGGCAACGGCGTTATGGCGGCGGCGGCAGCGGCGGTGGCGCCCTCGAGTC
GACCGGGAACGGGGAGGACACGGTGACAGCGACGACCTCACCTTGTTACA
GCCAAGTGGGAGAACATGTGAAACGTTTACGACTTTGTTCGGTTTTGTGA
GCAGGCATGTACGTTTTAGCTTCGCCATTTGGCCTCGCATTTATTTTTCT
GTTCTGTTTTTCCCTTGCCAGCGCACCGTGCACTTTGATGCAGAAAACAC
ACGTATGCAAAAGCGTGTGCGTACTGCTTT back to topprotein sequence of EsuBft1352_9a-0001 >EsuBft1352_9 ID=EsuBft1352_9|Name=EsuBft1352_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MTGGTAAATAAAASPVAALASGVQTAATGAAAAAPVTDVCDEELEEAVAR
RAAAMLAAMRGWMKPGVEPRRTLSTPVRHLRVARGDGGRYQGLRTPSIGA
GTGVAAPAAAMAAAAAATRVATSARAPAATPAAAGAAKEVVTSAIAPTAT
PAAGAASARTSSAAAATTAAVVEAVEATSPAAVLALELMTVVAAGERQRR
YGGGGSGGGALESTGNGEDTVTATTSPCYSQVGEHVKRLRLCSVL back to topmRNA from alignment at Scaffold_70:212926..214044+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1352_9a-0001 ID=EsuBft1352_9a-0001|Name=EsuBft1352_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1119bp|location=Sequence derived from alignment at Scaffold_70:212926..214044+ (Ectocarpus subulatus male Bft15b)
AGCATCGTCCCTGGTCGCCGCGTTGGCGCCGGGTACTCAGACGGATGCAG
CGGCGATGGCGGCGGCGTCAGTGACAGGGGGAACGGCAGCGGCAGCAGCA
GCTGCGGCGTGTCGTCGGGTATCCAGACGGTTGCAGCGGCGGCGGTAGCG
ACATCGATGACGGGGGGTACGGCAGCGGCGACAGCAGCAGCGGCGTCCCC
GGTCGCCGCGTTGGCGTCGGGTGTCCAGACGGCCGCAACGGGGGCGGCGG
CGGCGGCACCGGTGACGGACGTATGTGACGAAGAGTTGGAGGAAGCGGTT
GGTGCGACGACGACGCCGTTGCCAGTCCTGGAGGAGCTCGACAGCCAATG
GGCTGGACGTGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAG
GAGAGCGGCGGCAATGTTAGCGGCGATGAGGGGCTGGATGAAACCTGGAG
TGGAGCCCCGACGCACCCTTTCGACCCCGGTAAGACATCTTCGCGTGGCG
CGAGGAGACGGGGGGCGGTACCAGGGGTTGCGTACCCCTTCGATAGGGGC
AGGAACGGGAGTGGCAGCTCCGGCGGCGGCAATGGCGGCAGCCGCAGCAG
CGACGAGAGTGGCGACTTCGGCCAGAGCTCCGGCGGCGACACCGGCGGCA
GCAGGAGCAGCGAAGGAAGTGGTGACTTCGGCCATAGCTCCGACGGCGAC
ACCGGCGGCAGGGGCGGCTTCGGCCAGAACCTCGTCGGCGGCAGCGGCGA
CAACGGCGGCGGTGGTAGAGGCGGTAGAAGCGACGTCACCGGCAGCCGTG
TTGGCGCTGGAACTCATGACGGTCGTGGCGGCGGGGGAACGGCAACGGCG
TTATGGCGGCGGCGGCAGCGGCGGTGGCGCCCTCGAGTCGACCGGGAACG
GGGAGGACACGGTGACAGCGACGACCTCACCTTGTTACAGCCAAGTGGGA
GAACATGTGAAACGTTTACGACTTTGTTCGGTTTTGTGAGCAGGCATGTA
CGTTTTAGCTTCGCCATTTGGCCTCGCATTTATTTTTCTGTTCTGTTTTT
CCCTTGCCAGCGCACCGTGCACTTTGATGCAGAAAACACACGTATGCAAA
AGCGTGTGCGTACTGCTTT back to topCoding sequence (CDS) from alignment at Scaffold_70:212926..214044+ >EsuBft1352_9a-0001 ID=EsuBft1352_9a-0001|Name=EsuBft1352_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=738bp|location=Sequence derived from alignment at Scaffold_70:212926..214044+ (Ectocarpus subulatus male Bft15b)
ATGACGGGGGGTACGGCAGCGGCGACAGCAGCAGCGGCGTCCCCGGTCGC
CGCGTTGGCGTCGGGTGTCCAGACGGCCGCAACGGGGGCGGCGGCGGCGG
CACCGGTGACGGACGTATGTGACGAAGAGTTGGAGGAAGCGGTTGCGAGG
AGAGCGGCGGCAATGTTAGCGGCGATGAGGGGCTGGATGAAACCTGGAGT
GGAGCCCCGACGCACCCTTTCGACCCCGGTAAGACATCTTCGCGTGGCGC
GAGGAGACGGGGGGCGGTACCAGGGGTTGCGTACCCCTTCGATAGGGGCA
GGAACGGGAGTGGCAGCTCCGGCGGCGGCAATGGCGGCAGCCGCAGCAGC
GACGAGAGTGGCGACTTCGGCCAGAGCTCCGGCGGCGACACCGGCGGCAG
CAGGAGCAGCGAAGGAAGTGGTGACTTCGGCCATAGCTCCGACGGCGACA
CCGGCGGCAGGGGCGGCTTCGGCCAGAACCTCGTCGGCGGCAGCGGCGAC
AACGGCGGCGGTGGTAGAGGCGGTAGAAGCGACGTCACCGGCAGCCGTGT
TGGCGCTGGAACTCATGACGGTCGTGGCGGCGGGGGAACGGCAACGGCGT
TATGGCGGCGGCGGCAGCGGCGGTGGCGCCCTCGAGTCGACCGGGAACGG
GGAGGACACGGTGACAGCGACGACCTCACCTTGTTACAGCCAAGTGGGAG
AACATGTGAAACGTTTACGACTTTGTTCGGTTTTGTGA back to top
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