EsuBft1352_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1352_8a-0001
Unique Name	EsuBft1352_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_70	contig	Scaffold_70:195398..198787 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1352_8
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	339
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_8a	EsuBft1352_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_70 195398..198787 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_8a-0001-exon	EsuBft1352_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 195398..198787 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_8a-0001-exon	agat-three_prime_utr-3207	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_70 195398..197847 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_8a-0001-cds	EsuBft1352_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_70 197848..198510 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_8a-0001-exon	agat-five_prime_utr-2110	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_70 198511..198787 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1352_8a-0001	EsuBft1352_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_70 197848..198510 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:195398..198787-
coding sequence from alignment at Scaffold_70:195398..198787-

spliced messenger RNA

>EsuBft1352_8a-0001 ID=EsuBft1352_8a-0001|Name=EsuBft1352_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3390bp|location=Sequence derived from alignment at Scaffold_70:195398..198787- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACATGA
ACTAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAGATC
CACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAGGGA
GCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGTTGG
ATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAGGAG
TTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCCGAC
TGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGAGAG
GGGTCAGGGTCGAGGCTTCTTACGTGCTGTCGCTCTTCCTTTCGGCCCTA
CCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGACTCT
GGACCGGGGCGAGGTCATGAGAGTGGTGGGCTCCCAGCACTCCAGCATCA
AGCAGGGGAAGAGCCATCGGAACAGCAACCGCAACAATCACAAGGCGTCT
GAGCAGGGATTACTCGTGAGCGCCGACAATGGCAGCGGCGGAAAAGCTGG
TCGCAACCGCGGCCGCGGGGGACGCGGCGGTGGCGGAAACGGCGAAAATG
GCGGCAGCGGCAACGGCAACGGCAACGGCGGTGGAGACGGCAGCAGCTAC
GGCGGCCGTCGTAGGGGCCGGTGCTACCGGTGCAAGAGGCGAGGGCACCA
GTCGTTCTCGTGCACTACCCCCATCGCCGACTTCATGACCCAGTGCGAGA
ACTGCGACGGGTATGGACACGATGAGAGCAAGTGCCCGTCGGCGAAGGAC
GAGGAGAAGGCGAAGGGCGAGACGGCGGTCATGGCGATTGCGGTGGCGAG
CGATGACGAGGAGCTGGATGTGGCAAGTGAGGCCTTGTAAGAAGAGGCGG
GGGAAAGACACAATATCCGCGCTGGTCACTACGCGCGCACCANNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNACTGAGGCAATACAGCTCCCTCTAG
CAAACCTAGGGTCGTGTAGTGCCCGTCCGCCTTTTTGACGGTGTCTGCCT
ACGCGCAAAAAAATGAGATGGGCATCACTGCCTACGCCGACGGCCAGAAA
GGCCCGCGCATCTACATTTTCCCGCCTGACCCCATCAGTG

protein sequence of EsuBft1352_8a-0001

>EsuBft1352_8 ID=EsuBft1352_8|Name=EsuBft1352_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=220bp
MPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYDHAKL
TLQSAPTLDRGEVMRVVGSQHSSIKQGKSHRNSNRNNHKASEQGLLVSAD
NGSGGKAGRNRGRGGRGGGGNGENGGSGNGNGNGGGDGSSYGGRRRGRCY
RCKRRGHQSFSCTTPIADFMTQCENCDGYGHDESKCPSAKDEEKAKGETA
VMAIAVASDDEELDVASEAL

mRNA from alignment at Scaffold_70:195398..198787-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1352_8a-0001 ID=EsuBft1352_8a-0001|Name=EsuBft1352_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3390bp|location=Sequence derived from alignment at Scaffold_70:195398..198787- (Ectocarpus subulatus male Bft15b)
CGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACATGA
ACTAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAGATC
CACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAGGGA
GCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGTTGG
ATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAGGAG
TTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCCGAC
TGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGAGAG
GGGTCAGGGTCGAGGCTTCTTACGTGCTGTCGCTCTTCCTTTCGGCCCTA
CCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGACTCT
GGACCGGGGCGAGGTCATGAGAGTGGTGGGCTCCCAGCACTCCAGCATCA
AGCAGGGGAAGAGCCATCGGAACAGCAACCGCAACAATCACAAGGCGTCT
GAGCAGGGATTACTCGTGAGCGCCGACAATGGCAGCGGCGGAAAAGCTGG
TCGCAACCGCGGCCGCGGGGGACGCGGCGGTGGCGGAAACGGCGAAAATG
GCGGCAGCGGCAACGGCAACGGCAACGGCGGTGGAGACGGCAGCAGCTAC
GGCGGCCGTCGTAGGGGCCGGTGCTACCGGTGCAAGAGGCGAGGGCACCA
GTCGTTCTCGTGCACTACCCCCATCGCCGACTTCATGACCCAGTGCGAGA
ACTGCGACGGGTATGGACACGATGAGAGCAAGTGCCCGTCGGCGAAGGAC
GAGGAGAAGGCGAAGGGCGAGACGGCGGTCATGGCGATTGCGGTGGCGAG
CGATGACGAGGAGCTGGATGTGGCAAGTGAGGCCTTGTAAGAAGAGGCGG
GGGAAAGACACAATATCCGCGCTGGTCACTACGCGCGCACCANNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNACTGAGGCAATACAGCTCCCTCTAG
CAAACCTAGGGTCGTGTAGTGCCCGTCCGCCTTTTTGACGGTGTCTGCCT
ACGCGCAAAAAAATGAGATGGGCATCACTGCCTACGCCGACGGCCAGAAA
GGCCCGCGCATCTACATTTTCCCGCCTGACCCCATCAGTG

Coding sequence (CDS) from alignment at Scaffold_70:195398..198787-

>EsuBft1352_8a-0001 ID=EsuBft1352_8a-0001|Name=EsuBft1352_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=663bp|location=Sequence derived from alignment at Scaffold_70:195398..198787- (Ectocarpus subulatus male Bft15b)
ATGCCGGCCGACAAAAACCCGACTGAATCGCTTATCGCCATGGAGCAACT
CGCAAGTCGTCTGAACGAGAGAGGGGTCAGGGTCGAGGCTTCTTACGTGC
TGTCGCTCTTCCTTTCGGCCCTACCGGCCGAGTACGACCATGCCAAACTG
ACTCTGCAGTCCGCACCGACTCTGGACCGGGGCGAGGTCATGAGAGTGGT
GGGCTCCCAGCACTCCAGCATCAAGCAGGGGAAGAGCCATCGGAACAGCA
ACCGCAACAATCACAAGGCGTCTGAGCAGGGATTACTCGTGAGCGCCGAC
AATGGCAGCGGCGGAAAAGCTGGTCGCAACCGCGGCCGCGGGGGACGCGG
CGGTGGCGGAAACGGCGAAAATGGCGGCAGCGGCAACGGCAACGGCAACG
GCGGTGGAGACGGCAGCAGCTACGGCGGCCGTCGTAGGGGCCGGTGCTAC
CGGTGCAAGAGGCGAGGGCACCAGTCGTTCTCGTGCACTACCCCCATCGC
CGACTTCATGACCCAGTGCGAGAACTGCGACGGGTATGGACACGATGAGA
GCAAGTGCCCGTCGGCGAAGGACGAGGAGAAGGCGAAGGGCGAGACGGCG
GTCATGGCGATTGCGGTGGCGAGCGATGACGAGGAGCTGGATGTGGCAAG
TGAGGCCTTGTAA