EsuBft1352_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1352_6a-0001
Unique NameEsuBft1352_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:182865..185756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1352_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length273
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_6aEsuBft1352_6aEctocarpus subulatus male Bft15bgeneScaffold_70 182865..185756 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_6a-0001-exonagat-exon-84055Ectocarpus subulatus male Bft15bexonScaffold_70 182865..183380 -
EsuBft1352_6a-0001-exonEsuBft1352_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 183541..185756 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_6a-0001-exonagat-three_prime_utr-3203Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 182865..183380 -
EsuBft1352_6a-0001-exonagat-three_prime_utr-3204Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 183541..185570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_6a-0001-cdsEsuBft1352_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 185571..185756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_6a-0001EsuBft1352_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 185571..185756 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1352_6a-0001 ID=EsuBft1352_6a-0001|Name=EsuBft1352_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2732bp|location=Sequence derived from alignment at Scaffold_70:182865..185756- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGGAAAATAGGGCCGCGGTACGTTAGCAATCTGCGCGTGGGAAA
CGTTGGGCGGCGGATAGTTACCACCACGGCCGCCCACCTGACGACCTCGG
CTCTCCGGGGGGGAAGGATCGTATCCACCATACCCACGCCCCCCAGAGTT
GCGCCCCTGCAGTTGTCCTCCAGCTTCGGATCCTAGCCCACGCGGCGGTC
CCGGCAGCGCTGGAGAGTGACCCCCACTCCAGCCCGCACCTTGTTCATTT
TGGTACGGCTGCTGTCAAGATGGGCCACCAACCATCCGCCCCGAGTCTTG
AGCTCCGCCTCGAGGGAAGACCGACCCCTGGGCCTCCCGCCTCCCCCTCA
TGTACGCGCAGAACTCGTTGTAGTGGGCGAGTAATTCGTGGCGTAACTTG
CGACATTCGGAGGTCTCGTGGGTGCTGTTGGGGCCGTGGAGCTGGCAGAA
GTGCGATGGCTGTTGCTGATGTGGCTGCACCGACCCCTGTGGTTGCTGGA
GTCGATGTCCGCCTTGCTCCAATCCTGCAGCGGCTGGTTTCCCCGCCCCG
CCGCCCCGGCCCACGCCGGCAGCGACAAGGGCCTGCCTCATCTCTTCCTT
CCCCTCTCCAGCTCTCCGCTCGTACCTCAGCTCGTGCTCTTCCAACCTCA
GCATCTCCTGCATTGTAGCCCTCGACAACATCGAATCAAACAGAAGACGG
TCTTTAGTTTCCTCAAACCTTGGGAGAAATCCCCGGACGATGTGCCTGCA
CATCGATTTTTTATCGCTGTTATCACCATTCGATCGAAGTCTCATCCACA
GCGCAACGGCCCTACCGTAATAGTCCATAAGACTCGCTCCTTGCCTCCGG
CCTATTACGTTTCATGCGTCGTCAAGAGTTTGTCGCTCCTGACTCTTGTC
TTGGCTGTATTGTTCGAGAAACACGCGGTACCCTGCTTGAGGTGATTCTG
ATGCCAAGATTTGGGCTTGTACGGGTTGTGCTGTGATCTTTGCTAGCATA
AACGTCCAAATCTTCCTGGATTGCTTCACTCTCTCCTCTCCGAACGTGCT
CCTCAACCAGTTCAAATCCACAACAGGAGCTGCCCCAACAGGGACCTCTG
AACTCCTCATCACACCAACAAGTCCCTCACTCTCCAGGCACGCTTCAAAA
GCACTCGTGAACACTCGCAGTGCGACTTCGATCGATCTGTTCTTCAGATA
GTCATCCCTCCATGCTGGTACATCTATCATTTCTCTCTGCCTCAGTTCTA
AAATCTGGTTGCTAGACGTGCCTGAGTGGGCACGGTGCCCCTGGTCATGA
GTTGATGTCGCGAAGGCCTGCTTGAAGAGGTCAACCAGCTCACGCATCGT
GTCGCGCTGATCTTCCCCTCCTGCCGCTCGCGCACCCCCTCGGTCTCGTG
CATCGTTGACGAAGAAATAATCGCTCCCTCTTCCGTCCGCGACGCCTTCC
CCGGGGGCAGGGACAGCCTGACCTGATCCCCCGGAGGTTGTCTTCCGTCT
CCGTCCGGCATGTTAGACACGGCGATAACTCTCTTGATCGTTACGCTAGC
GTGTTGAGTAGCTTTGTGCGTCGGTGCCTTGGCGCGCGGGGTCCCTTGGG
TGGGAAATAAAAAAGCCAGCGGCGCGGTAGCCGCCAACGGTACAGTGTAG
GAACTAATGGGCGTGACAGCCTTCTACTTTGGGGTGGAGCGTGATGGCTC
GGGTATGGTATCTCTGGATGTGGCGTGGAAGCCTGGTGACGTGATAGTCG
TGGTGTAAAGGAATATGTAAGGACGTTGATGTCCGGAAGGCGTGATCGCC
GAGTGGCGTGATAGCCAGGATTGGCGTGGAAGTCGTGGCGTGATAGCCGT
GGAAGCGTGGTAGCCGGGGAAAAAGGAATTAAAATTTATTGCACACAGGA
AGGAGGAAAAAGAGGAAAAAAATAACAAGTGAGAAACCACAACACACAAT
CACCATATCCGTTGTAGACACACACATACCCCCACCCTCAATCCTGTAAT
ATATGGCAAAGTTGGTACCATCAAATCGAATCCAAAGCAACTGCTGAATC
CCCAAACTCCCCGCTCCACCTGCTCGGAAATTTCTTGCTTGCAATAATCT
GTCGATGCTGTGAGTACGTCAAACACTCAGCTCCGATCACTTTGCGTGTC
AAAAGATCGCCGTTGTGCCTCGGCTAAGAGCAAAAAACATACATAGAGAC
CAGCAGGGCGACACAGGNGTCGGTGTAGGCAGCAATGCCCATCTCATCTT
TGTGCGCGGAGGCAGACGTCATCAGAAAGGTGGACGGGCACTATGTACAC
GGCCCTAGGTTTGCTAGAGGGAGCTGTACTGTCTCAGTAACCTGGTTTTG
CCATCAAAGGAGGAGGGGACAGGTGGTGACGAGCTGATTGGGCTGGTTGA
CCCTTCGGCGCGAGAATTTTCAGACCAAGAACCGTAAGTGCAATGAGAGG
GAGAAAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAGCGTGTAAGAA
GCGGAGCGGGTCGAGTTTGGTCGTGCTAGGACTGGCCACAGCGGCACCGG
AGCAGCGGCACCGGAGCAGCGGAACCGGAGCATGCGGACGGCATCGAACC
GTGGCGCACGGACAAACATCTCTTGTGTAGTCAATTTTTTCCCGTTTTTT
TCCTGAAAATAGGTGTTGGGTGTGTGTGATGACGTCAGTCACTGGTTTTA
TAGAGAGACGTGGCAGAGATGGCGCGGATAAC
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protein sequence of EsuBft1352_6a-0001

>EsuBft1352_6 ID=EsuBft1352_6|Name=EsuBft1352_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MSRKIGPRYVSNLRVGNVGRRIVTTTAAHLTTSALRGGRIVSTIPTPPRV
APLQLSSSFGS
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mRNA from alignment at Scaffold_70:182865..185756-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1352_6a-0001 ID=EsuBft1352_6a-0001|Name=EsuBft1352_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2892bp|location=Sequence derived from alignment at Scaffold_70:182865..185756- (Ectocarpus subulatus male Bft15b)
ATGAGCCGGAAAATAGGGCCGCGGTACGTTAGCAATCTGCGCGTGGGAAA
CGTTGGGCGGCGGATAGTTACCACCACGGCCGCCCACCTGACGACCTCGG
CTCTCCGGGGGGGAAGGATCGTATCCACCATACCCACGCCCCCCAGAGTT
GCGCCCCTGCAGTTGTCCTCCAGCTTCGGATCCTAGCCCACGCGGCGGTC
CCGGCAGCGCTGGAGAGTGACCCCCACTCCAGCCCGCACCTTGTTCATTT
TGGTACGGCTGCTGTCAAGATGGGCCACCAACCATCCGCCCCGAGTCTTG
AGCTCCGCCTCGAGGGAAGACCGACCCCTGGGCCTCCCGCCTCCCCCTCA
TGTACGCGCAGAACTCGTTGTAGTGGGCGAGTAATTCGTGGCGTAACTTG
CGACATTCGGAGGTCTCGTGGGTGCTGTTGGGGCCGTGGAGCTGGCAGAA
GTGCGATGGCTGTTGCTGATGTGGCTGCACCGACCCCTGTGGTTGCTGGA
GTCGATGTCCGCCTTGCTCCAATCCTGCAGCGGCTGGTTTCCCCGCCCCG
CCGCCCCGGCCCACGCCGGCAGCGACAAGGGCCTGCCTCATCTCTTCCTT
CCCCTCTCCAGCTCTCCGCTCGTACCTCAGCTCGTGCTCTTCCAACCTCA
GCATCTCCTGCATTGTAGCCCTCGACAACATCGAATCAAACAGAAGACGG
TCTTTAGTTTCCTCAAACCTTGGGAGAAATCCCCGGACGATGTGCCTGCA
CATCGATTTTTTATCGCTGTTATCACCATTCGATCGAAGTCTCATCCACA
GCGCAACGGCCCTACCGTAATAGTCCATAAGACTCGCTCCTTGCCTCCGG
CCTATTACGTTTCATGCGTCGTCAAGAGTTTGTCGCTCCTGACTCTTGTC
TTGGCTGTATTGTTCGAGAAACACGCGGTACCCTGCTTGAGGTGATTCTG
ATGCCAAGATTTGGGCTTGTACGGGTTGTGCTGTGATCTTTGCTAGCATA
AACGTCCAAATCTTCCTGGATTGCTTCACTCTCTCCTCTCCGAACGTGCT
CCTCAACCAGTTCAAATCCACAACAGGAGCTGCCCCAACAGGGACCTCTG
AACTCCTCATCACACCAACAAGTCCCTCACTCTCCAGGCACGCTTCAAAA
GCACTCGTGAACACTCGCAGTGCGACTTCGATCGATCTGTTCTTCAGATA
GTCATCCCTCCATGCTGGTACATCTATCATTTCTCTCTGCCTCAGTTCTA
AAATCTGGTTGCTAGACGTGCCTGAGTGGGCACGGTGCCCCTGGTCATGA
GTTGATGTCGCGAAGGCCTGCTTGAAGAGGTCAACCAGCTCACGCATCGT
GTCGCGCTGATCTTCCCCTCCTGCCGCTCGCGCACCCCCTCGGTCTCGTG
CATCGTTGACGAAGAAATAATCGCTCCCTCTTCCGTCCGCGACGCCTTCC
CCGGGGGCAGGGACAGCCTGACCTGATCCCCCGGAGGTTGTCTTCCGTCT
CCGTCCGGCATGTTAGACACGGCGATAACTCTCTTGATCGTTACGCTAGC
GTGTTGAGTAGCTTTGTGCGTCGGTGCCTTGGCGCGCGGGGTCCCTTGGG
TGGGAAATAAAAAAGCCAGCGGCGCGGTAGCCGCCAACGGTACAGTGTAG
GAACTAATGGGCGTGACAGCCTTCTACTTTGGGGTGGAGCGTGATGGCTC
GGGTATGGTATCTCTGGATGTGGCGTGGAAGCCTGGTGACGTGATAGTCG
TGGTGTAAAGGAATATGTAAGGACGTTGATGTCCGGAAGGCGTGATCGCC
GAGTGGCGTGATAGCCAGGATTGGCGTGGAAGTCGTGGCGTGATAGCCGT
GGAAGCGTGGTAGCCGGGGAAAAAGGAATTAAAATTTATTGCACACAGGA
AGGAGGAAAAAGAGGAAAAAAATAACAAGTGAGAAACCACAACACACAAT
CACCATATCCGTTGTAGACACACACATACCCCCACCCTCAATCCTGTAAT
ATATGGCAAAGTTGGTACCATCAAATCGAATCCAAAGCAACTGCTGAATC
CCCAAACTCCCCGCTCCACCTGCTCGGAAATTTCTTGCTTGCAATAATCT
GTCGATGCTGTGAGTACGTCAAACACTCAGCTCCGATCACTTTGCGTGTC
AAAAGATCGCCGTTGTGCCTCGGCTAAGAGCAAAAAACATACATAGAGAC
CAGCAGGGCGACACAGGTAGCCCACCCCAAAAGCACGCTGATCAGCAATG
CGCACAGGACTCACATTGTACATTACTGTTCACCCATGCCTAACTTCCCC
TTCTTCCCCTCGCTGCCTCTGGAAGGTTTTGCGTAGGCATGACCCATAGC
GAGGGGGGAGTCTTTCTAGCGAGCAGGNGTCGGTGTAGGCAGCAATGCCC
ATCTCATCTTTGTGCGCGGAGGCAGACGTCATCAGAAAGGTGGACGGGCA
CTATGTACACGGCCCTAGGTTTGCTAGAGGGAGCTGTACTGTCTCAGTAA
CCTGGTTTTGCCATCAAAGGAGGAGGGGACAGGTGGTGACGAGCTGATTG
GGCTGGTTGACCCTTCGGCGCGAGAATTTTCAGACCAAGAACCGTAAGTG
CAATGAGAGGGAGAAAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAG
CGTGTAAGAAGCGGAGCGGGTCGAGTTTGGTCGTGCTAGGACTGGCCACA
GCGGCACCGGAGCAGCGGCACCGGAGCAGCGGAACCGGAGCATGCGGACG
GCATCGAACCGTGGCGCACGGACAAACATCTCTTGTGTAGTCAATTTTTT
CCCGTTTTTTTCCTGAAAATAGGTGTTGGGTGTGTGTGATGACGTCAGTC
ACTGGTTTTATAGAGAGACGTGGCAGAGATGGCGCGGATAAC
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Coding sequence (CDS) from alignment at Scaffold_70:182865..185756-

>EsuBft1352_6a-0001 ID=EsuBft1352_6a-0001|Name=EsuBft1352_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_70:182865..185756- (Ectocarpus subulatus male Bft15b)
ATGAGCCGGAAAATAGGGCCGCGGTACGTTAGCAATCTGCGCGTGGGAAA
CGTTGGGCGGCGGATAGTTACCACCACGGCCGCCCACCTGACGACCTCGG
CTCTCCGGGGGGGAAGGATCGTATCCACCATACCCACGCCCCCCAGAGTT
GCGCCCCTGCAGTTGTCCTCCAGCTTCGGATCCTAG
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