EsuBft1352_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1352_5a-0001
Unique NameEsuBft1352_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:178616..181384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXD3
ProteomeIdEsuBft1352_5
Protein domainsIPR004875
Protein domainsPTHR19303
Ownerapollo_admin@sb-roscoff.fr
Notepogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1107
Hectar predicted targeting categoryother localisation
Evalue4.85e-41
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePOGK
KEGG koko:K09228
DescriptionDNA binding
COG categoryCH
BRITEko00000,ko03000
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_5aEsuBft1352_5aEctocarpus subulatus male Bft15bgeneScaffold_70 178616..181384 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_5a-0001-exonEsuBft1352_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 178616..179249 -
EsuBft1352_5a-0001-exonagat-exon-84054Ectocarpus subulatus male Bft15bexonScaffold_70 180912..181384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_5a-0001-cdsEsuBft1352_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 178616..179249 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_5a-0001-exonagat-five_prime_utr-2109Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 181361..181384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_5a-0001EsuBft1352_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 178616..181360 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1352_5a-0001 ID=EsuBft1352_5a-0001|Name=EsuBft1352_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1107bp|location=Sequence derived from alignment at Scaffold_70:178616..181384- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCACACCCCTGTGCCAAGACCCCGATGTGTGCGATCCTAACATTGAAAAC
CACAGGGGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAACACGATCA
CAACACAACCAAAAGACAAGCTGGTAGCTGCACACACAAACGAGTCTCGG
GGAATTGCCACCACAACAGTTCCGTGGCGGAGAAATACCGGCGGAAAATC
GGGAAAATGTCCGGGACGGAGCTGCGGGCTCGACCACACGCAACGCGCGG
CTACGATGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCCTCACAGGCC
TCACAGTCCTCACAGGCTAGTGCTGGCGGTCCTTCCTCTGCGGATCAGGG
AGCTGCCGCTGCAGACCCGAAGGCAACCGGCGAGGATATCGATGAGATGC
TAGCCGCCAACGACCCCGTCAAAAACAGCAACGGCAAACGCGTGTACCCG
GAGCCCAACTTCCCGATCGAGCGCTGGAGTGACCAGCGGGAGTGCAACGG
GTGGATCTCGGGCAGCTGGAAGCTCCGTCCCAACAACGGCAGCATCGTCC
AGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCCACAAGGAC
GAGGGTTTCATCGCCGCCCTCAAGAGAGACGCCAACACCATCGTCACCTT
CATCCCAGGCGGATTAACGCCCTTGCTCCAACCGCTCGACCGCATGCTCT
ACAGGCAGATGATGCGGCTGCTGCGGGGCAAGTGCACCGCCTACAGCGCG
TCGGCGGTCGCAGACGCCCGGTCGGGGAAGATGAAGCCACCGGAGCGTGG
GATCGTCTCGACGTGGTGCAAGGAAGCGTGGGAGTCCATCACCCCCGAGA
CGGTGAAGACTTGCTTCAAGATCAGCGCTCTCACGCTCGCGCTCGACGGC
AGCGAAGGCCACGCCTGGTGCGAGCACAACTTCGGGGAAGACTGCCGCGA
CCTTCTCGAGGAGCAGCACGCCGTGTGGCTCGCTGAGCACCTCGACGTGA
CTCTCCCGCCGCTCAAGCTGCTAAAGGAACCAGGGGGGTGGACTCCAACC
CCATGTTCGTATATGTCCTTTACTTGGAAGGGGAAGACGTTTTATCTCTT
GTATTAG
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protein sequence of EsuBft1352_5a-0001

>EsuBft1352_5 ID=EsuBft1352_5|Name=EsuBft1352_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=360bp
MCAILTLKTTGDSSTSRVWYCCNTITTQPKDKLVAAHTNESRGIATTTVP
WRRNTGGKSGKCPGRSCGLDHTQRAATMSEGASAGPADASQASQSSQASA
GGPSSADQGAAAADPKATGEDIDEMLAANDPVKNSNGKRVYPEPNFPIER
WSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALK
RDANTIVTFIPGGLTPLLQPLDRMLYRQMMRLLRGKCTAYSASAVADARS
GKMKPPERGIVSTWCKEAWESITPETVKTCFKISALTLALDGSEGHAWCE
HNFGEDCRDLLEEQHAVWLAEHLDVTLPPLKLLKEPGGWTPTPCSYMSFT
WKGKTFYLLY
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mRNA from alignment at Scaffold_70:178616..181384-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1352_5a-0001 ID=EsuBft1352_5a-0001|Name=EsuBft1352_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2769bp|location=Sequence derived from alignment at Scaffold_70:178616..181384- (Ectocarpus subulatus male Bft15b)
GCACACCCCTGTGCCAAGACCCCGATGTGTGCGATCCTAACATTGAAAAC
CACAGGGGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAACACGATCA
CAACACAACCAAAAGACAAGCTGGTAGCTGCACACACAAACGAGTCTCGG
GGAATTGCCACCACAACAGTTCCGTGGCGGAGAAATACCGGCGGAAAATC
GGGAAAATGTCCGGGACGGAGCTGCGGGCTCGACCACACGCAACGCGCGG
CTACGATGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCCTCACAGGCC
TCACAGTCCTCACAGGCTAGTGCTGGCGGTCCTTCCTCTGCGGATCAGGG
AGCTGCCGCTGCAGACCCGAAGGCAACCGGCGAGGATATCGATGAGATGC
TAGCCGCCAACGACCCCGTCAAAAACAGCAACGGCAAACGCGTGTACCCG
GAGCCCAACTTCCCGATCGAGCGGTCAGGAGCAGAAATATTCAACACTCT
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGGAGTGACCAGCG
GGAGTGCAACGGGTGGATCTCGGGCAGCTGGAAGCTCCGTCCCAACAACG
GCAGCATCGTCCAGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAG
TGCCACAAGGACGAGGGTTTCATCGCCGCCCTCAAGAGAGACGCCAACAC
CATCGTCACCTTCATCCCAGGCGGATTAACGCCCTTGCTCCAACCGCTCG
ACCGCATGCTCTACAGGCAGATGATGCGGCTGCTGCGGGGCAAGTGCACC
GCCTACAGCGCGTCGGCGGTCGCAGACGCCCGGTCGGGGAAGATGAAGCC
ACCGGAGCGTGGGATCGTCTCGACGTGGTGCAAGGAAGCGTGGGAGTCCA
TCACCCCCGAGACGGTGAAGACTTGCTTCAAGATCAGCGCTCTCACGCTC
GCGCTCGACGGCAGCGAAGGCCACGCCTGGTGCGAGCACAACTTCGGGGA
AGACTGCCGCGACCTTCTCGAGGAGCAGCACGCCGTGTGGCTCGCTGAGC
ACCTCGACGTGACTCTCCCGCCGCTCAAGCTGCTAAAGGAACCAGGGGGG
TGGACTCCAACCCCATGTTCGTATATGTCCTTTACTTGGAAGGGGAAGAC
GTTTTATCTCTTGTATTAG
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Coding sequence (CDS) from alignment at Scaffold_70:178616..181384-

>EsuBft1352_5a-0001 ID=EsuBft1352_5a-0001|Name=EsuBft1352_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1083bp|location=Sequence derived from alignment at Scaffold_70:178616..181384- (Ectocarpus subulatus male Bft15b)
ATGTGTGCGATCCTAACATTGAAAACCACAGGGGATAGCAGCACTTCGCG
TGTATGGTATTGCTGCAACACGATCACAACACAACCAAAAGACAAGCTGG
TAGCTGCACACACAAACGAGTCTCGGGGAATTGCCACCACAACAGTTCCG
TGGCGGAGAAATACCGGCGGAAAATCGGGAAAATGTCCGGGACGGAGCTG
CGGGCTCGACCACACGCAACGCGCGGCTACGATGTCGGAGGGTGCAAGCG
CGGGACCTGCCGACGCCTCACAGGCCTCACAGTCCTCACAGGCTAGTGCT
GGCGGTCCTTCCTCTGCGGATCAGGGAGCTGCCGCTGCAGACCCGAAGGC
AACCGGCGAGGATATCGATGAGATGCTAGCCGCCAACGACCCCGTCAAAA
ACAGCAACGGCAAACGCGTGTACCCGGAGCCCAACTTCCCGATCGAGCGC
TGGAGTGACCAGCGGGAGTGCAACGGGTGGATCTCGGGCAGCTGGAAGCT
CCGTCCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGCATCCTGGTGC
TGGACGACTTCAAGTGCCACAAGGACGAGGGTTTCATCGCCGCCCTCAAG
AGAGACGCCAACACCATCGTCACCTTCATCCCAGGCGGATTAACGCCCTT
GCTCCAACCGCTCGACCGCATGCTCTACAGGCAGATGATGCGGCTGCTGC
GGGGCAAGTGCACCGCCTACAGCGCGTCGGCGGTCGCAGACGCCCGGTCG
GGGAAGATGAAGCCACCGGAGCGTGGGATCGTCTCGACGTGGTGCAAGGA
AGCGTGGGAGTCCATCACCCCCGAGACGGTGAAGACTTGCTTCAAGATCA
GCGCTCTCACGCTCGCGCTCGACGGCAGCGAAGGCCACGCCTGGTGCGAG
CACAACTTCGGGGAAGACTGCCGCGACCTTCTCGAGGAGCAGCACGCCGT
GTGGCTCGCTGAGCACCTCGACGTGACTCTCCCGCCGCTCAAGCTGCTAA
AGGAACCAGGGGGGTGGACTCCAACCCCATGTTCGTATATGTCCTTTACT
TGGAAGGGGAAGACGTTTTATCTCTTGTATTAG
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