EsuBft1352_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1352_4a-0001
Unique NameEsuBft1352_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:177092..177795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra85923
ProteomeIdEsuBft1352_4
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl4776|Peronosporales
Length608
Hectar predicted targeting categoryother localisation
Evalue2.24e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_4aEsuBft1352_4aEctocarpus subulatus male Bft15bgeneScaffold_70 177092..177795 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_4a-0001-exonEsuBft1352_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 177092..177390 +
EsuBft1352_4a-0001-exonagat-exon-84053Ectocarpus subulatus male Bft15bexonScaffold_70 177487..177795 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_4a-0001-exonagat-five_prime_utr-2108Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 177092..177153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_4a-0001-cdsEsuBft1352_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 177154..177390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1352_4a-0001EsuBft1352_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 177154..177795 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1352_4a-0001 ID=EsuBft1352_4a-0001|Name=EsuBft1352_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=608bp|location=Sequence derived from alignment at Scaffold_70:177092..177795+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCCGAAGAGAGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCG
ATCGGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCC
TCTGAACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGA
ACGCGCTTAAGCGGATCATGCCCTACCTGAACTTCACGAAGGACTTCGGC
ATCACCTACGTACGGGGGTCAGGACTAGACCTAAGTGTGTTTGTCAATGC
CAGCTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTG
GCGTGAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCC
GAGACGAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAACGGGGCTCT
CGCCTTAATAATCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCG
ACGTGCGGTTCCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACT
GCAGAGTATGTTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGT
CCTTGGCAGAAAGAAGTTAGATTACCACCGGAAGGCTCTGATGAACCTAC
CGGTGTAG
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protein sequence of EsuBft1352_4a-0001

>EsuBft1352_4 ID=EsuBft1352_4|Name=EsuBft1352_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=181bp
MWTKLTRPDIALPLNKLQKIAHSPTGRIWNALKRIMPYLNFTKDFGITYV
RGSGLDLSVFVNASYADNEVDRRSTTGLAGVKEALFVRGVLSFIAPETSG
AKIKVLEDNNGALALIIENPFSSARSKHIDVRFHFIRELFKSGKITAEYV
PTGEQHADMLTKVLGRKKLDYHRKALMNLPV
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mRNA from alignment at Scaffold_70:177092..177795+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1352_4a-0001 ID=EsuBft1352_4a-0001|Name=EsuBft1352_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=704bp|location=Sequence derived from alignment at Scaffold_70:177092..177795+ (Ectocarpus subulatus male Bft15b)
GGCCGAAGAGAGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCG
ATCGGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCC
TCTGAACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGA
ACGCGCTTAAGCGGATCATGCCCTACCTGAACTTCACGAAGGACTTCGGC
ATCACCTACGTACGGGGGTCAGGACTAGACCTAAGTGTGTTTGTCAATGC
CAGCTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTG
TGACCGTAGGTGGTACCGTAGTGTGTGCTTCCACCAAGACGCAGCCAGTG
ACGGCTCAGTCGACCTTGGAAGCAGAGTTTATGGCAGCCGGGGAGGGCGT
GAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGAGA
CGAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAACGGGGCTCTCGCC
TTAATAATCGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCGACGT
GCGGTTCCATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAG
AGTATGTTCCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTT
GGCAGAAAGAAGTTAGATTACCACCGGAAGGCTCTGATGAACCTACCGGT
GTAG
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Coding sequence (CDS) from alignment at Scaffold_70:177092..177795+

>EsuBft1352_4a-0001 ID=EsuBft1352_4a-0001|Name=EsuBft1352_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=546bp|location=Sequence derived from alignment at Scaffold_70:177092..177795+ (Ectocarpus subulatus male Bft15b)
ATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAACAAGCT
CCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACGCGCTTAAGC
GGATCATGCCCTACCTGAACTTCACGAAGGACTTCGGCATCACCTACGTA
CGGGGGTCAGGACTAGACCTAAGTGTGTTTGTCAATGCCAGCTACGCTGA
CAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGGCGTGAAGGAGG
CGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGAGACGAGTGGG
GCGAAGATCAAGGTCCTTGAGGACAACAACGGGGCTCTCGCCTTAATAAT
CGAGAACCCGTTCAGCTCAGCGAGGAGCAAGCACATCGACGTGCGGTTCC
ATTTCATTCGCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATGTT
CCGACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGAAA
GAAGTTAGATTACCACCGGAAGGCTCTGATGAACCTACCGGTGTAG
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