Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft917_10 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 95 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | RmlC-like jelly roll fold |
| Ec32 ortholog | Ec-19_004930.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft917_10a-0001 ID=EsuBft917_10a-0001|Name=EsuBft917_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=954bp|location=Sequence derived from alignment at Scaffold_70:164542..166207+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCCGTCACCTTCGCCCATGAGGGATATGACGCCTGCTGGGCTTGTAA
CGACCCCTCCTTCAGCTACTTCCTTGTCAGCGGCAGCCTCGCACCGGTGA
AAATCATCCCAAACCGCTTATCGGCATCGCTCCAGAATCCTACCCCGCTA
CGCTACGCCGGCACGAGCAATAGTCTGAAGCACACGCTCGGCGTTGAGCT
CACCGCATCTGAGGCGCAACTGCGGCAGGACCGCTGCGAGCATTCTGCAA
GGCTGGAGGCGCACGAAAGCAACGCTGAAAAGGGGACCGCCGGAGGAGTT
CACCATCCAGCTGTTTACGGGGTCCAAATCCCTGGTACAGCCCGCTCACC
GGGCGACAAGAGCAGCAGCACCGCCGGGTCTACCTGGAGCCCTGTGGCGC
CGAGGAAAGACGGCGGCTTGACGTCCGACCACGGTGGTGGTGGTGGCAGT
GACATCGAGAGCACCCCTGGCGGAGGGATTTTTTCCGTCCTCAAGGCAAC
AAAACCCTCTGAGATCAACGCGTCGGAAGTCGACTTCTCTACAAACGAAG
GGAGAGAGACCCCCCTCTTGCTGCCGGGGCAATCCCTCGACTGCTATCTG
TTGCTACACCGCGTCAAGGTGATCGGCCCGGAGAGAGACCCCGACAAAGC
GGTAAGCCCCGAAGTCGTTCCGGCCGCGGCCGAGAGAGTTACTGGGACGA
CACGGTGGAAGCTAGACGCTCGACAGGGGTCGTGCATCGGCAAGGTGAGC
CGCCGATTTTTGCGGGAGCTCGAGCGCGAGGAGGCGAAGCACGAGACGGA
AGTGAAGGTTTCTTTCCTTCGACAGACCGAGGTGTTTGGGAAAGGATTTA
GTGCCGCAGCTCTTGAGCAAGTAGCCCTGCTCATGGAGCGTCGGAAAGAG
CCCGCAGCAGCCGTGGTACGGCGAAAAGGCTCTGCAGTGGACAAGGTTGA
GTGA back to topprotein sequence of EsuBft917_10a-0001 >EsuBft917_10 ID=EsuBft917_10|Name=EsuBft917_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=317bp
MSVTFAHEGYDACWACNDPSFSYFLVSGSLAPVKIIPNRLSASLQNPTPL
RYAGTSNSLKHTLGVELTASEAQLRQDRCEHSARLEAHESNAEKGTAGGV
HHPAVYGVQIPGTARSPGDKSSSTAGSTWSPVAPRKDGGLTSDHGGGGGS
DIESTPGGGIFSVLKATKPSEINASEVDFSTNEGRETPLLLPGQSLDCYL
LLHRVKVIGPERDPDKAVSPEVVPAAAERVTGTTRWKLDARQGSCIGKVS
RRFLRELEREEAKHETEVKVSFLRQTEVFGKGFSAAALEQVALLMERRKE
PAAAVVRRKGSAVDKVE back to topmRNA from alignment at Scaffold_70:164542..166207+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft917_10a-0001 ID=EsuBft917_10a-0001|Name=EsuBft917_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1666bp|location=Sequence derived from alignment at Scaffold_70:164542..166207+ (Ectocarpus subulatus male Bft15b)
ATGTCCGTCACCTTCGCCCATGAGGGATATGACGCCTGCTGGGCTTGTAA
CGACCCCTCCTTCAGCTACTTCCTTGTCAGCGGCAGCCTCGCACCGGTGA
AAATCATCCCAAACCGCTTATCGGCATCGCTCCAGAATCCTACCCCGCTA
CGCTACGCCGGCACGAGCAATAGTCTGAAGCACACGCTCGGCGTTGAGCT
CACCGCATCTGAGGCGCAACTGCGGCAGGACCGCTGCGAGCATTCTGCAA
GGCTGGAGGCGCACGAAAGCAACGCTGAAAAGGGGACCGCCGGAGGAGTT
CACCATCCAGCTGTTTACGGGGTCCAAATCCCTGGTACAGCCCGCTCACC
GGGCGACAAGAGCAGCAGCACCGCCGGGTCTACCTGGAGCCCTGTGGCGC
CGAGGAAAGACGGCGGCTTGACGTCCGACCACGGTGGTGGTGGTGGCAGT
GACATCGAGAGCACCCCTGGCGGAGGGATTTTTTCCGTCCTCAAGGCAAC
AAAACCCTCTGAGATCAACGCGTCGGAAGTCGACTTCTCTACAAACGAAG
GGAGAGAGACCCCCCTCTTGCTGCCGGGGCAATCCCTCGACTGCTATCTG
TTGCTACACCGCGTCAAGGTGATCGGCCCGGAGAGAGACCCCGACAAAGC
GGTAAGCCCCGAAGTCGTTCCGGCCGCGGCCGAGAGAGTTACTGGGACGA
CACGGTGGAAGCTAGACGCTCGACAGGGGTCGTGCATCGGCAAGGTGAGC
CGCCGATTTTTGCGGGAGCTCGAGCGCGAGGAGGCGAAGCACGAGACGGA
AGTGAAGGTTTCTTTCCTTCGACAGACCGAGGTGAGCGAGGGCAACGCCC
TTCGTCGAAACAGGTGTTTATTGCGGCACCCGGACGGTGTACAAGTACTG
TATGTGGGGTGTACATCTAGCCAAAAAAGAAGCCTCAAGTTACCCTGTGT
TTTCAGCAAGGTTTTTGTGTCAGCGCCTGTCGCCACAGTGCGGAATCGAG
GCATCCCGTGCTTTCGAAAATTAAGCATAACCTTGAGACGAGCGCCATCT
TCCGAAAACCAGACAAAATTTGTTGGCTATACAATGAAACACTCACATCC
ATTCGGAAGCAACGAAACAATCGGCAAGAAAGCAAAATATACCACACACA
TAGCCCTCACGCACCCATCACTAGTGCAGAAGGTTAGGAAAGAAAATGGC
ACGTCCTAACCGAGCACTTCGGTGGGAGGCATTTACCTCTCCGCTGTTTC
TTTTGTCCATTGACAAATGGAGTGGAAGTTCCGGGTCAAGGTTGTCGGGG
CTCAACAGCGCCTCTTTCCGTGTCTGCACCAGGTGTTTGGGAAAGGATTT
AGTGCCGCAGCTCTTGAGCAAGTAGCCCTGCTCATGGAGCGTCGGAAAGA
GCCCGCAGCAGCCGTGGTACGGCGAAAAGGCTCTGCAGTGGACAAGGTTC
GTCCAGGCGAAGGCTTTGGCCGCCGTGGGACCGTCGCGAATAAATCCCCC
CCCCCCCCCCCCCCGCAATCTAGACTTCAGTGGGTTGGCGCTGTTGGCAA
AGCGCTGTAAAACACGCCACCCCAAATATAGCCCCCATAGTATGCGCTAC
CAAAGACGCGTGACGCATGGATGCGTGGAGTGAGGATTGCTTACGGAAAC
CTCACAGGTTGAGTGA back to topCoding sequence (CDS) from alignment at Scaffold_70:164542..166207+ >EsuBft917_10a-0001 ID=EsuBft917_10a-0001|Name=EsuBft917_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=954bp|location=Sequence derived from alignment at Scaffold_70:164542..166207+ (Ectocarpus subulatus male Bft15b)
ATGTCCGTCACCTTCGCCCATGAGGGATATGACGCCTGCTGGGCTTGTAA
CGACCCCTCCTTCAGCTACTTCCTTGTCAGCGGCAGCCTCGCACCGGTGA
AAATCATCCCAAACCGCTTATCGGCATCGCTCCAGAATCCTACCCCGCTA
CGCTACGCCGGCACGAGCAATAGTCTGAAGCACACGCTCGGCGTTGAGCT
CACCGCATCTGAGGCGCAACTGCGGCAGGACCGCTGCGAGCATTCTGCAA
GGCTGGAGGCGCACGAAAGCAACGCTGAAAAGGGGACCGCCGGAGGAGTT
CACCATCCAGCTGTTTACGGGGTCCAAATCCCTGGTACAGCCCGCTCACC
GGGCGACAAGAGCAGCAGCACCGCCGGGTCTACCTGGAGCCCTGTGGCGC
CGAGGAAAGACGGCGGCTTGACGTCCGACCACGGTGGTGGTGGTGGCAGT
GACATCGAGAGCACCCCTGGCGGAGGGATTTTTTCCGTCCTCAAGGCAAC
AAAACCCTCTGAGATCAACGCGTCGGAAGTCGACTTCTCTACAAACGAAG
GGAGAGAGACCCCCCTCTTGCTGCCGGGGCAATCCCTCGACTGCTATCTG
TTGCTACACCGCGTCAAGGTGATCGGCCCGGAGAGAGACCCCGACAAAGC
GGTAAGCCCCGAAGTCGTTCCGGCCGCGGCCGAGAGAGTTACTGGGACGA
CACGGTGGAAGCTAGACGCTCGACAGGGGTCGTGCATCGGCAAGGTGAGC
CGCCGATTTTTGCGGGAGCTCGAGCGCGAGGAGGCGAAGCACGAGACGGA
AGTGAAGGTTTCTTTCCTTCGACAGACCGAGGTGTTTGGGAAAGGATTTA
GTGCCGCAGCTCTTGAGCAAGTAGCCCTGCTCATGGAGCGTCGGAAAGAG
CCCGCAGCAGCCGTGGTACGGCGAAAAGGCTCTGCAGTGGACAAGGTTGA
GTGA back to top
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