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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 2880.D7G3K0 |
| ProteomeId | EsuBft917_9 |
| Protein domains | IPR019265 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 93 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.8e-141 |
| EggNOG OGs | KOG4380@1|root,KOG4380@2759|Eukaryota |
| Ec32 ortholog description | Protein of unknown function UPF0568 |
| Ec32 ortholog | Ec-19_004940.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | C14orf166 |
| KEGG rclass | RC00002 |
| KEGG ko | ko:K15433,ko:K18532 |
| KEGG Reaction | R00127,R01547 |
| KEGG Pathway | ko00230,ko01100,ko01110,ko01130,ko03008,map00230,map01100,map01110,map01130,map03008 |
| KEGG Module | M00049 |
| GOs | GO:0000394,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006388,GO:0006396,GO:0006399,GO:0006403,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0015630,GO:0015931,GO:0016070,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0042325,GO:0042326,GO:0042802,GO:0043086,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045859,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0071702,GO:0071704,GO:0071705,GO:0072669,GO:0072686,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141 |
| EC | 2.7.4.3 |
| Description | RNA polymerase II complex binding |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft917_9a-0001 ID=EsuBft917_9a-0001|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=930bp|location=Sequence derived from alignment at Scaffold_70:161373..163239- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCGTGTGCTTGGATCACCTAGCTTTTAAGAATGGCATGCGAAGCACGTAT
CATTCGCGCGTTGCGCACGATGGAGTACCCGGGGTTGGATCACATCTCAG
GATCGGCAGCAACAGGTCGGAGTTTGGTCGCGCAGCCTCATGAGCTCGCC
AAGATCGTCGGTTGGATAGAGGACAGAAAGATCCGAGGCCTCACCATCTC
CGACCGTGAGCCCCTGCGCACCCCCGGGCCAAAATGGGAAGAGGCGTTTT
TTAGCTACTTGCAGGAGATGGGCTGCCCCAACGATTTCAAGGCAACCGGG
GGAGGCGGAGGAGAACCAAGTGGTGCCGCCGTCCTGCGTGGAGTATCGTG
GTTGGTTACCGAGGCCGTGGCCTATGATTTCGAGGACAACGGGAAGGAAT
ACAAGGCTGCTGCTAGAGAGTTGTTGTTGGCGAAAACGCGGTTTTCTCCA
CAAGCCATGGGAGGGGCAAGAGGGGGCAGCAGCAGCGACCCTAGCTCGGT
GCAGCCAGAACCGGCGCAGCAAACCATCAGTACTGCCGGCGATGCCATGG
ACATTGGTTCTGGAGAAGAACACCGAACATTTCGAGAGCAGCTCAGGGGG
TTCACGGCTGGGGTAGAAACTGGGGACGAGGCTTGCGACAGCGTGGCGAC
GGTGCTTCGGATGCTCTACTTGTCGGACTTGAGGAGCCTGCAGAACGAGG
TCAACGGTGTCATAGACTTGGCGCAATCCACTAGACGAGAACAGAAAACA
GCAGTGTGACGACAACGAATGTTGCTGTTGATAACGAAACCCTCCTCCGT
AGAAGGGTGCTTTGAACGTGGGGTGTGACGAGAGGTAGTCATTTTGGGTT
TGGTCTTCGATCTGCCGCAACGTGGACACCAGTTGTTGGCGCTTGTCCGA
GTGAAGAGAGTCGTGCAAGTATTTGAATCC back to topprotein sequence of EsuBft917_9a-0001 >EsuBft917_9 ID=EsuBft917_9|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=242bp
MACEARIIRALRTMEYPGLDHISGSAATGRSLVAQPHELAKIVGWIEDRK
IRGLTISDREPLRTPGPKWEEAFFSYLQEMGCPNDFKATGGGGGEPSGAA
VLRGVSWLVTEAVAYDFEDNGKEYKAAARELLLAKTRFSPQAMGGARGGS
SSDPSSVQPEPAQQTISTAGDAMDIGSGEEHRTFREQLRGFTAGVETGDE
ACDSVATVLRMLYLSDLRSLQNEVNGVIDLAQSTRREQKTAV back to topmRNA from alignment at Scaffold_70:161373..163239- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft917_9a-0001 ID=EsuBft917_9a-0001|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1867bp|location=Sequence derived from alignment at Scaffold_70:161373..163239- (Ectocarpus subulatus male Bft15b)
GCGTGTGCTTGGATCACCTAGCTTTTAAGAATGGCATGCGAAGCACGTAT
CATTCGCGCGTTGCGCACGATGGAGTACCCGGGGTTGGATCACATCTCAG
GATCGGCAGCAACAGGTCGGAGTTTGGTCGCGCAGCCTCATGAGCTCGCC
AAGATCGTCGGTTGGATAGAGGACAGAAAGGTGTGTGCGGCGGGCTTTGG
AACGGAGAAGGAAGAAGGACTGGAGGATCTACCTGTTGCTGGTATTTTGC
ACCAGAGCTTCCTCGCGTAGGTAGCCATTCACGTTCAAGGTCGGGTAACG
GATGACCAGAGGTTATTTTTGTCATTGCCCATACACCCCTTCGCGCAGGG
GCGTGCACTACTTACTGCCCTGTACAACGTCTTGACAGCTGCTGATTATA
TTGCTATCGAACACCATTCGTATGGGGTTGGTGTACATTATAAGAGCACC
ACACCAAATAAATGGGACATTCACGAACGAAGAGAGAAAATGTTATAACC
CCGGCTGTGTGACCGAGCCATGGTTGCTTCTGTCGCCCCGCGATGGCCTA
CACCATCTATCCGAGATAAACTCTCCGCATAAATATAGGAGGCGGCCGCG
TGTGCCTGCACCACGATATCCCCTCCCCCGCCCCCTTTGCTCGGGCTGTT
ACATCTGTTGATGTGTGTGGTATTGTTTAGATCCGAGGCCTCACCATCTC
CGACCGTGAGCCCCTGCGCACCCCCGGGCCAAAATGGGAAGAGGCGTTTT
TTAGCTACTTGCAGGAGATGGGCTGCCCCAACGATTTCAAGGCAACCGGG
GGAGGCGGAGGAGAACCAAGTGGTGCCGCCGTCCTGCGTGGAGTATCGTG
GTTGGTTACCGAGGCCGTGGCCTATGATTTCGAGGACAACGGGAAGGAAT
ACAAGGCTGCTGCTAGAGAGGTACGAGCGTTCCTTTGCGATAGATCTTTG
CTTCGGTCTGCAACAGGCGGCGATTGGTGTCAACAGATCAGTGAATAAAT
TCAATACACGGCTGTTCGCAACATGTTGCCCTTCGTGTCGATGTGTACAT
TCGTGGTGTGGAATGGCAACTCACGAAAGCCGTGGCGTGGCTTCGAAAGG
GGGCGTATCACGGCACATGTACCACGCATGTACAGGTTAGGTTACTGCTA
GTTCTTGTTTTGACCAAGTTCCAGAAAATTGTCTACCGACCTGTGTGTGG
AGATATTTTTTTCTATGCCACAATGCCAATCTATTCTCCCTGAGACTTGT
TATCGCCCTCTTTACTGATCATCAATCAATCTCACTCTCCCCCGTTATCC
TCACCGACACACGACGGTTACATGTAAAATCTCCTCTACAAACACCAAAT
TCTGCAGTTGTTGTTGGCGAAAACGCGGTTTTCTCCACAAGCCATGGGAG
GGGCAAGAGGGGGCAGCAGCAGCGACCCTAGCTCGGTGCAGCCAGAACCG
GCGCAGCAAACCATCAGTACTGCCGGCGATGCCATGGACATTGGTTCTGG
AGAAGAACACCGAACATTTCGAGAGCAGCTCAGGGGGTTCACGGCTGGGG
TAGAAACTGGGGACGAGGCTTGCGACAGCGTGGCGACGGTGCTTCGGATG
CTCTACTTGTCGGACTTGAGGAGCCTGCAGAACGAGGTCAACGGTGTCAT
AGACTTGGCGCAATCCACTAGACGAGAACAGAAAACAGCAGTGTGACGAC
AACGAATGTTGCTGTTGATAACGAAACCCTCCTCCGTAGAAGGGTGCTTT
GAACGTGGGGTGTGACGAGAGGTAGTCATTTTGGGTTTGGTCTTCGATCT
GCCGCAACGTGGACACCAGTTGTTGGCGCTTGTCCGAGTGAAGAGAGTCG
TGCAAGTATTTGAATCC back to topCoding sequence (CDS) from alignment at Scaffold_70:161373..163239- >EsuBft917_9a-0001 ID=EsuBft917_9a-0001|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=729bp|location=Sequence derived from alignment at Scaffold_70:161373..163239- (Ectocarpus subulatus male Bft15b)
ATGGCATGCGAAGCACGTATCATTCGCGCGTTGCGCACGATGGAGTACCC
GGGGTTGGATCACATCTCAGGATCGGCAGCAACAGGTCGGAGTTTGGTCG
CGCAGCCTCATGAGCTCGCCAAGATCGTCGGTTGGATAGAGGACAGAAAG
ATCCGAGGCCTCACCATCTCCGACCGTGAGCCCCTGCGCACCCCCGGGCC
AAAATGGGAAGAGGCGTTTTTTAGCTACTTGCAGGAGATGGGCTGCCCCA
ACGATTTCAAGGCAACCGGGGGAGGCGGAGGAGAACCAAGTGGTGCCGCC
GTCCTGCGTGGAGTATCGTGGTTGGTTACCGAGGCCGTGGCCTATGATTT
CGAGGACAACGGGAAGGAATACAAGGCTGCTGCTAGAGAGTTGTTGTTGG
CGAAAACGCGGTTTTCTCCACAAGCCATGGGAGGGGCAAGAGGGGGCAGC
AGCAGCGACCCTAGCTCGGTGCAGCCAGAACCGGCGCAGCAAACCATCAG
TACTGCCGGCGATGCCATGGACATTGGTTCTGGAGAAGAACACCGAACAT
TTCGAGAGCAGCTCAGGGGGTTCACGGCTGGGGTAGAAACTGGGGACGAG
GCTTGCGACAGCGTGGCGACGGTGCTTCGGATGCTCTACTTGTCGGACTT
GAGGAGCCTGCAGAACGAGGTCAACGGTGTCATAGACTTGGCGCAATCCA
CTAGACGAGAACAGAAAACAGCAGTGTGA back to top
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