EsuBft917_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft917_9a-0001
Unique NameEsuBft917_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:161373..163239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G3K0
ProteomeIdEsuBft917_9
Protein domainsIPR019265
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length93
Hectar predicted targeting categoryother localisation
Evalue1.8e-141
EggNOG OGsKOG4380@1|root,KOG4380@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function UPF0568
Ec32 orthologEc-19_004940.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameC14orf166
KEGG rclassRC00002
KEGG koko:K15433,ko:K18532
KEGG ReactionR00127,R01547
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko03008,map00230,map01100,map01110,map01130,map03008
KEGG ModuleM00049
GOsGO:0000394,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006388,GO:0006396,GO:0006399,GO:0006403,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0015630,GO:0015931,GO:0016070,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0042325,GO:0042326,GO:0042802,GO:0043086,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045859,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0071702,GO:0071704,GO:0071705,GO:0072669,GO:0072686,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EC2.7.4.3
DescriptionRNA polymerase II complex binding
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft917_9aEsuBft917_9aEctocarpus subulatus male Bft15bgeneScaffold_70 161373..163239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_9a-0001EsuBft917_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 161544..163209 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_9a-0001-exonagat-exon-21930Ectocarpus subulatus male Bft15bexonScaffold_70 161373..161882 -
EsuBft917_9a-0001-exonagat-exon-21929Ectocarpus subulatus male Bft15bexonScaffold_70 162320..162559 -
EsuBft917_9a-0001-exonEsuBft917_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 163060..163239 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_9a-0001-exonagat-three_prime_utr-23025Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 161373..161543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_9a-0001-cdsEsuBft917_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 161544..161882 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft917_9a-0001-exonagat-five_prime_utr-14970Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_70 163210..163239 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft917_9a-0001 ID=EsuBft917_9a-0001|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=930bp|location=Sequence derived from alignment at Scaffold_70:161373..163239- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGTGTGCTTGGATCACCTAGCTTTTAAGAATGGCATGCGAAGCACGTAT
CATTCGCGCGTTGCGCACGATGGAGTACCCGGGGTTGGATCACATCTCAG
GATCGGCAGCAACAGGTCGGAGTTTGGTCGCGCAGCCTCATGAGCTCGCC
AAGATCGTCGGTTGGATAGAGGACAGAAAGATCCGAGGCCTCACCATCTC
CGACCGTGAGCCCCTGCGCACCCCCGGGCCAAAATGGGAAGAGGCGTTTT
TTAGCTACTTGCAGGAGATGGGCTGCCCCAACGATTTCAAGGCAACCGGG
GGAGGCGGAGGAGAACCAAGTGGTGCCGCCGTCCTGCGTGGAGTATCGTG
GTTGGTTACCGAGGCCGTGGCCTATGATTTCGAGGACAACGGGAAGGAAT
ACAAGGCTGCTGCTAGAGAGTTGTTGTTGGCGAAAACGCGGTTTTCTCCA
CAAGCCATGGGAGGGGCAAGAGGGGGCAGCAGCAGCGACCCTAGCTCGGT
GCAGCCAGAACCGGCGCAGCAAACCATCAGTACTGCCGGCGATGCCATGG
ACATTGGTTCTGGAGAAGAACACCGAACATTTCGAGAGCAGCTCAGGGGG
TTCACGGCTGGGGTAGAAACTGGGGACGAGGCTTGCGACAGCGTGGCGAC
GGTGCTTCGGATGCTCTACTTGTCGGACTTGAGGAGCCTGCAGAACGAGG
TCAACGGTGTCATAGACTTGGCGCAATCCACTAGACGAGAACAGAAAACA
GCAGTGTGACGACAACGAATGTTGCTGTTGATAACGAAACCCTCCTCCGT
AGAAGGGTGCTTTGAACGTGGGGTGTGACGAGAGGTAGTCATTTTGGGTT
TGGTCTTCGATCTGCCGCAACGTGGACACCAGTTGTTGGCGCTTGTCCGA
GTGAAGAGAGTCGTGCAAGTATTTGAATCC
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protein sequence of EsuBft917_9a-0001

>EsuBft917_9 ID=EsuBft917_9|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=242bp
MACEARIIRALRTMEYPGLDHISGSAATGRSLVAQPHELAKIVGWIEDRK
IRGLTISDREPLRTPGPKWEEAFFSYLQEMGCPNDFKATGGGGGEPSGAA
VLRGVSWLVTEAVAYDFEDNGKEYKAAARELLLAKTRFSPQAMGGARGGS
SSDPSSVQPEPAQQTISTAGDAMDIGSGEEHRTFREQLRGFTAGVETGDE
ACDSVATVLRMLYLSDLRSLQNEVNGVIDLAQSTRREQKTAV
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mRNA from alignment at Scaffold_70:161373..163239-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft917_9a-0001 ID=EsuBft917_9a-0001|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1867bp|location=Sequence derived from alignment at Scaffold_70:161373..163239- (Ectocarpus subulatus male Bft15b)
GCGTGTGCTTGGATCACCTAGCTTTTAAGAATGGCATGCGAAGCACGTAT
CATTCGCGCGTTGCGCACGATGGAGTACCCGGGGTTGGATCACATCTCAG
GATCGGCAGCAACAGGTCGGAGTTTGGTCGCGCAGCCTCATGAGCTCGCC
AAGATCGTCGGTTGGATAGAGGACAGAAAGGTGTGTGCGGCGGGCTTTGG
AACGGAGAAGGAAGAAGGACTGGAGGATCTACCTGTTGCTGGTATTTTGC
ACCAGAGCTTCCTCGCGTAGGTAGCCATTCACGTTCAAGGTCGGGTAACG
GATGACCAGAGGTTATTTTTGTCATTGCCCATACACCCCTTCGCGCAGGG
GCGTGCACTACTTACTGCCCTGTACAACGTCTTGACAGCTGCTGATTATA
TTGCTATCGAACACCATTCGTATGGGGTTGGTGTACATTATAAGAGCACC
ACACCAAATAAATGGGACATTCACGAACGAAGAGAGAAAATGTTATAACC
CCGGCTGTGTGACCGAGCCATGGTTGCTTCTGTCGCCCCGCGATGGCCTA
CACCATCTATCCGAGATAAACTCTCCGCATAAATATAGGAGGCGGCCGCG
TGTGCCTGCACCACGATATCCCCTCCCCCGCCCCCTTTGCTCGGGCTGTT
ACATCTGTTGATGTGTGTGGTATTGTTTAGATCCGAGGCCTCACCATCTC
CGACCGTGAGCCCCTGCGCACCCCCGGGCCAAAATGGGAAGAGGCGTTTT
TTAGCTACTTGCAGGAGATGGGCTGCCCCAACGATTTCAAGGCAACCGGG
GGAGGCGGAGGAGAACCAAGTGGTGCCGCCGTCCTGCGTGGAGTATCGTG
GTTGGTTACCGAGGCCGTGGCCTATGATTTCGAGGACAACGGGAAGGAAT
ACAAGGCTGCTGCTAGAGAGGTACGAGCGTTCCTTTGCGATAGATCTTTG
CTTCGGTCTGCAACAGGCGGCGATTGGTGTCAACAGATCAGTGAATAAAT
TCAATACACGGCTGTTCGCAACATGTTGCCCTTCGTGTCGATGTGTACAT
TCGTGGTGTGGAATGGCAACTCACGAAAGCCGTGGCGTGGCTTCGAAAGG
GGGCGTATCACGGCACATGTACCACGCATGTACAGGTTAGGTTACTGCTA
GTTCTTGTTTTGACCAAGTTCCAGAAAATTGTCTACCGACCTGTGTGTGG
AGATATTTTTTTCTATGCCACAATGCCAATCTATTCTCCCTGAGACTTGT
TATCGCCCTCTTTACTGATCATCAATCAATCTCACTCTCCCCCGTTATCC
TCACCGACACACGACGGTTACATGTAAAATCTCCTCTACAAACACCAAAT
TCTGCAGTTGTTGTTGGCGAAAACGCGGTTTTCTCCACAAGCCATGGGAG
GGGCAAGAGGGGGCAGCAGCAGCGACCCTAGCTCGGTGCAGCCAGAACCG
GCGCAGCAAACCATCAGTACTGCCGGCGATGCCATGGACATTGGTTCTGG
AGAAGAACACCGAACATTTCGAGAGCAGCTCAGGGGGTTCACGGCTGGGG
TAGAAACTGGGGACGAGGCTTGCGACAGCGTGGCGACGGTGCTTCGGATG
CTCTACTTGTCGGACTTGAGGAGCCTGCAGAACGAGGTCAACGGTGTCAT
AGACTTGGCGCAATCCACTAGACGAGAACAGAAAACAGCAGTGTGACGAC
AACGAATGTTGCTGTTGATAACGAAACCCTCCTCCGTAGAAGGGTGCTTT
GAACGTGGGGTGTGACGAGAGGTAGTCATTTTGGGTTTGGTCTTCGATCT
GCCGCAACGTGGACACCAGTTGTTGGCGCTTGTCCGAGTGAAGAGAGTCG
TGCAAGTATTTGAATCC
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Coding sequence (CDS) from alignment at Scaffold_70:161373..163239-

>EsuBft917_9a-0001 ID=EsuBft917_9a-0001|Name=EsuBft917_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=729bp|location=Sequence derived from alignment at Scaffold_70:161373..163239- (Ectocarpus subulatus male Bft15b)
ATGGCATGCGAAGCACGTATCATTCGCGCGTTGCGCACGATGGAGTACCC
GGGGTTGGATCACATCTCAGGATCGGCAGCAACAGGTCGGAGTTTGGTCG
CGCAGCCTCATGAGCTCGCCAAGATCGTCGGTTGGATAGAGGACAGAAAG
ATCCGAGGCCTCACCATCTCCGACCGTGAGCCCCTGCGCACCCCCGGGCC
AAAATGGGAAGAGGCGTTTTTTAGCTACTTGCAGGAGATGGGCTGCCCCA
ACGATTTCAAGGCAACCGGGGGAGGCGGAGGAGAACCAAGTGGTGCCGCC
GTCCTGCGTGGAGTATCGTGGTTGGTTACCGAGGCCGTGGCCTATGATTT
CGAGGACAACGGGAAGGAATACAAGGCTGCTGCTAGAGAGTTGTTGTTGG
CGAAAACGCGGTTTTCTCCACAAGCCATGGGAGGGGCAAGAGGGGGCAGC
AGCAGCGACCCTAGCTCGGTGCAGCCAGAACCGGCGCAGCAAACCATCAG
TACTGCCGGCGATGCCATGGACATTGGTTCTGGAGAAGAACACCGAACAT
TTCGAGAGCAGCTCAGGGGGTTCACGGCTGGGGTAGAAACTGGGGACGAG
GCTTGCGACAGCGTGGCGACGGTGCTTCGGATGCTCTACTTGTCGGACTT
GAGGAGCCTGCAGAACGAGGTCAACGGTGTCATAGACTTGGCGCAATCCA
CTAGACGAGAACAGAAAACAGCAGTGTGA
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