EsuBft917_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft917_2a-0001
Unique Name	EsuBft917_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_70	contig	Scaffold_70:94303..96645 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft917_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	201
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft917_2a	EsuBft917_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_70 94303..96645 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft917_2a-0001-exon	EsuBft917_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 94303..94586 +
EsuBft917_2a-0001-exon	agat-exon-21897	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 94735..95044 +
EsuBft917_2a-0001-exon	agat-exon-21896	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 95221..96645 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft917_2a-0001-cds	EsuBft917_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_70 94303..94586 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft917_2a-0001-exon	agat-three_prime_utr-23021	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_70 96442..96645 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft917_2a-0001	EsuBft917_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_70 94303..96441 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:94303..96645+
coding sequence from alignment at Scaffold_70:94303..96645+

spliced messenger RNA

>EsuBft917_2a-0001 ID=EsuBft917_2a-0001|Name=EsuBft917_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2019bp|location=Sequence derived from alignment at Scaffold_70:94303..96645+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGAGATGGAGGCCGAGGTAATGGCCAAAAAGAGAGCGTGGTCGCC
GTTCGTTCGGACGTATTCCCGGCCTGCACAAGAGGTTGAGGACGACCTGG
TGAAGTACGTAGGTGACTACGTCAAGCTTGACCAGGCTGCCATCGCCAGG
AAGGAGCTGCCACTGCTGCGCCCGGATTTACCACCAGGCAAATCGGGTCC
TATTGGCGCCATGGCAGCGCTGAACAAGCTCGTCAAGTGCCTCCGGGAAG
GATGCGGCCAGGATCCGTTCGACGTCAACCAAATGTATATCCCGCTTGGT
AGAGGGCCGAAGACTGGGCTCATGAGGTGGTCCAAGAAAGGAGGGACCGG
AAAGAACGAGAACTTCCACGGTGGCATCAACCGCCTGGTGAACGGCGTGG
CTCGGCTCGGTGCGGAAGCGTGCGATGCGAGGCTGCTGCAACGCATTCAT
CGTCACAACCACGACATGGACCGAAAGCTTGGCCGCACCAGCAAGCAGTC
TACCCTGTGGGTCTGGAGGGAGCGTAAGGCGAACGCTGCAGCCGAGTCGA
TCCTCACTTCGCGCCCGTTCCCCCGAGCGGGTGACACTCCGACGGTGGCC
GCGGAGGACTTTGAGCCTATGGGGTTCGAATACGCCGAACAGAGGAGAGC
CAACGCTCTGACAAACGCGAAAACCGCCGCGGCGAACTCGCTAGTCCTCA
CCCGTACTTCTCTGCCGTCAACGACGGCAGGAGATACCAGCCGGGCGGGG
GCCGCGGCCGTCGGGGCAGGAGCGGGGGCTCCGGCGGGGACCGCGGTGGG
TGCATGTGCGAGGGTGATGCCGTTGCCGTTGACCAACAGAGGAGGTCGGC
CGGGAGCGGCGGCGCTCATGCCGTCGACGATAGCGACAGGTTCTTCCGCC
GGTGCGGGGGCCGTGCCGCCACTGCTGTTGCCGCCAACGGCGACAGGAGG
GGCTGCCGAGGGGGCGGGGGCCGTCCCGCCGCTGTTGTTGCCGTCAACGA
CGACAGGAGTTGCTGCCGAGGGCGCTGCGGGTGCCAGTGGCGGCGGGGTG
ATGGGAGGTGCGACCAGCAGGACCTACCGCAGCAACGCTGGAGAAGCCGC
CGCCCAGGACATCTCGCGCGGTAACTACGGGGGGGGGCGGCGTTTGCCTT
CAAGGCACCCGACCCTGGAGAGGGTTAAAGCGTTGACTCCGACAAGTGAT
GCAGAGCTGGAGGCCTTTGCCACCTGTCTCGCGGAAGCGACGATGGTCTG
CGACGGGAAGAGCCAGGTGATGACCGAGGCGACGAAACGTTACAACGCAA
GGTATTACAGACAAGCACTTACGGGTGGCGCGCCGAAACTTATCCGTGCG
CCTACTACGGTAGAGAAGGCGCGAAATCGATCCAAGATAGCGGCCAAGGC
AGGAAGGGACCGAGATGCCGCCGCCGACCTCGCAGCCGTGAACGAGATAT
CTCGAGTCAGGACGTCCTCTGCTTCGACTTCTACTTCGACACCGCCGCCA
GCATCGAAGCGCGCCAGAGGGGACAGAGATAGAGCGAGTGAAAGAGTCGC
TAGCGGGGTGCCTTTGAAGCTTGAACAGATCAGCACCCTCACGGACGCAG
CCGCGATCGCCTACATGAAAGCCATAGGGTTGAAGTTGACAGGCAATGTT
GCACTCAAGCGGAAGAAACTATCCGACTTTTTCGAAAGCAAGAATATTTC
AGAGTACAGGTACTCTCCGTCAAGGCCTGCGACATCGCCCGCGCCCGCCG
AAGGACCCGCCAGTGGGCACATGTCGATCCGAGGGTTGGGGACTCGAAAT
ATCTGCTGGTGTTGAGTTGGTGTAGATGTATTTATCGGCGGGGCCTGCTC
TTTCTCCACCTTTGATCCAGACAATTAAATATTATTTATGATTCCATGCG
TGGACCGTCAAGGGTGATGGCTCTGTCCTCCTCTGTGCGTTTTGTTGTCT
GGCGTATGTGTTTGCCTCCTGCGTGGGAGACGGGATAGATATTCCGTTCG
TCTCGTCCCGAACGACCGG

protein sequence of EsuBft917_2a-0001

>EsuBft917_2 ID=EsuBft917_2|Name=EsuBft917_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=604bp
MLEMEAEVMAKKRAWSPFVRTYSRPAQEVEDDLVKYVGDYVKLDQAAIAR
KELPLLRPDLPPGKSGPIGAMAALNKLVKCLREGCGQDPFDVNQMYIPLG
RGPKTGLMRWSKKGGTGKNENFHGGINRLVNGVARLGAEACDARLLQRIH
RHNHDMDRKLGRTSKQSTLWVWRERKANAAAESILTSRPFPRAGDTPTVA
AEDFEPMGFEYAEQRRANALTNAKTAAANSLVLTRTSLPSTTAGDTSRAG
AAAVGAGAGAPAGTAVGACARVMPLPLTNRGGRPGAAALMPSTIATGSSA
GAGAVPPLLLPPTATGGAAEGAGAVPPLLLPSTTTGVAAEGAAGASGGGV
MGGATSRTYRSNAGEAAAQDISRGNYGGGRRLPSRHPTLERVKALTPTSD
AELEAFATCLAEATMVCDGKSQVMTEATKRYNARYYRQALTGGAPKLIRA
PTTVEKARNRSKIAAKAGRDRDAAADLAAVNEISRVRTSSASTSTSTPPP
ASKRARGDRDRASERVASGVPLKLEQISTLTDAAAIAYMKAIGLKLTGNV
ALKRKKLSDFFESKNISEYRYSPSRPATSPAPAEGPASGHMSIRGLGTRN
ICWC

mRNA from alignment at Scaffold_70:94303..96645+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft917_2a-0001 ID=EsuBft917_2a-0001|Name=EsuBft917_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2343bp|location=Sequence derived from alignment at Scaffold_70:94303..96645+ (Ectocarpus subulatus male Bft15b)
ATGTTGGAGATGGAGGCCGAGGTAATGGCCAAAAAGAGAGCGTGGTCGCC
GTTCGTTCGGACGTATTCCCGGCCTGCACAAGAGGTTGAGGACGACCTGG
TGAAGTACGTAGGTGACTACGTCAAGCTTGACCAGGCTGCCATCGCCAGG
AAGGAGCTGCCACTGCTGCGCCCGGATTTACCACCAGGCAAATCGGGTCC
TATTGGCGCCATGGCAGCGCTGAACAAGCTCGTCAAGTGCCTCCGGGAAG
GATGCGGCCAGGATCCGTTCGACGTCAACCAAATGTAAGTGGCTCTCGTC
AAGACGGCACCAATGCTTCAAGGCTGTTTCCACTGTTGTACTCTTATGCG
TTGATGTTTTTGCAGAATGTATTCTCAGTCATGTTTTTCCACCCTGCCGC
TTGTTTTTCTGTCGTACCATGTATGGCCTCAGGTATATCCCGCTTGGTAG
AGGGCCGAAGACTGGGCTCATGAGGTGGTCCAAGAAAGGAGGGACCGGAA
AGAACGAGAACTTCCACGGTGGCATCAACCGCCTGGTGAACGGCGTGGCT
CGGCTCGGTGCGGAAGCGTGCGATGCGAGGCTGCTGCAACGCATTCATCG
TCACAACCACGACATGGACCGAAAGCTTGGCCGCACCAGCAAGCAGTCTA
CCCTGTGGGTCTGGAGGGAGCGTAAGGCGAACGCTGCAGCCGAGTCGATC
CTCACTTCGCGCCCGTTCCCCCGAGCGGGTGACACTCCGACGGTGAGCCC
CAGTTGTATACTCATGGGAGGACACTTTCAACGTCGAGGGATTCTGCATT
CGTAGCCTTCATTTTTTTATGTGCCGTCGGTGCCGTGAAGTTTGGTACGC
CCACCCCGATCCATATGACGCGAGCTCTCTGACGTTTGTGCGTCACCCTA
TTGGATGACTCATTTCAGGTGGCCGCGGAGGACTTTGAGCCTATGGGGTT
CGAATACGCCGAACAGAGGAGAGCCAACGCTCTGACAAACGCGAAAACCG
CCGCGGCGAACTCGCTAGTCCTCACCCGTACTTCTCTGCCGTCAACGACG
GCAGGAGATACCAGCCGGGCGGGGGCCGCGGCCGTCGGGGCAGGAGCGGG
GGCTCCGGCGGGGACCGCGGTGGGTGCATGTGCGAGGGTGATGCCGTTGC
CGTTGACCAACAGAGGAGGTCGGCCGGGAGCGGCGGCGCTCATGCCGTCG
ACGATAGCGACAGGTTCTTCCGCCGGTGCGGGGGCCGTGCCGCCACTGCT
GTTGCCGCCAACGGCGACAGGAGGGGCTGCCGAGGGGGCGGGGGCCGTCC
CGCCGCTGTTGTTGCCGTCAACGACGACAGGAGTTGCTGCCGAGGGCGCT
GCGGGTGCCAGTGGCGGCGGGGTGATGGGAGGTGCGACCAGCAGGACCTA
CCGCAGCAACGCTGGAGAAGCCGCCGCCCAGGACATCTCGCGCGGTAACT
ACGGGGGGGGGCGGCGTTTGCCTTCAAGGCACCCGACCCTGGAGAGGGTT
AAAGCGTTGACTCCGACAAGTGATGCAGAGCTGGAGGCCTTTGCCACCTG
TCTCGCGGAAGCGACGATGGTCTGCGACGGGAAGAGCCAGGTGATGACCG
AGGCGACGAAACGTTACAACGCAAGGTATTACAGACAAGCACTTACGGGT
GGCGCGCCGAAACTTATCCGTGCGCCTACTACGGTAGAGAAGGCGCGAAA
TCGATCCAAGATAGCGGCCAAGGCAGGAAGGGACCGAGATGCCGCCGCCG
ACCTCGCAGCCGTGAACGAGATATCTCGAGTCAGGACGTCCTCTGCTTCG
ACTTCTACTTCGACACCGCCGCCAGCATCGAAGCGCGCCAGAGGGGACAG
AGATAGAGCGAGTGAAAGAGTCGCTAGCGGGGTGCCTTTGAAGCTTGAAC
AGATCAGCACCCTCACGGACGCAGCCGCGATCGCCTACATGAAAGCCATA
GGGTTGAAGTTGACAGGCAATGTTGCACTCAAGCGGAAGAAACTATCCGA
CTTTTTCGAAAGCAAGAATATTTCAGAGTACAGGTACTCTCCGTCAAGGC
CTGCGACATCGCCCGCGCCCGCCGAAGGACCCGCCAGTGGGCACATGTCG
ATCCGAGGGTTGGGGACTCGAAATATCTGCTGGTGTTGAGTTGGTGTAGA
TGTATTTATCGGCGGGGCCTGCTCTTTCTCCACCTTTGATCCAGACAATT
AAATATTATTTATGATTCCATGCGTGGACCGTCAAGGGTGATGGCTCTGT
CCTCCTCTGTGCGTTTTGTTGTCTGGCGTATGTGTTTGCCTCCTGCGTGG
GAGACGGGATAGATATTCCGTTCGTCTCGTCCCGAACGACCGG

Coding sequence (CDS) from alignment at Scaffold_70:94303..96645+

>EsuBft917_2a-0001 ID=EsuBft917_2a-0001|Name=EsuBft917_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1815bp|location=Sequence derived from alignment at Scaffold_70:94303..96645+ (Ectocarpus subulatus male Bft15b)
ATGTTGGAGATGGAGGCCGAGGTAATGGCCAAAAAGAGAGCGTGGTCGCC
GTTCGTTCGGACGTATTCCCGGCCTGCACAAGAGGTTGAGGACGACCTGG
TGAAGTACGTAGGTGACTACGTCAAGCTTGACCAGGCTGCCATCGCCAGG
AAGGAGCTGCCACTGCTGCGCCCGGATTTACCACCAGGCAAATCGGGTCC
TATTGGCGCCATGGCAGCGCTGAACAAGCTCGTCAAGTGCCTCCGGGAAG
GATGCGGCCAGGATCCGTTCGACGTCAACCAAATGTATATCCCGCTTGGT
AGAGGGCCGAAGACTGGGCTCATGAGGTGGTCCAAGAAAGGAGGGACCGG
AAAGAACGAGAACTTCCACGGTGGCATCAACCGCCTGGTGAACGGCGTGG
CTCGGCTCGGTGCGGAAGCGTGCGATGCGAGGCTGCTGCAACGCATTCAT
CGTCACAACCACGACATGGACCGAAAGCTTGGCCGCACCAGCAAGCAGTC
TACCCTGTGGGTCTGGAGGGAGCGTAAGGCGAACGCTGCAGCCGAGTCGA
TCCTCACTTCGCGCCCGTTCCCCCGAGCGGGTGACACTCCGACGGTGGCC
GCGGAGGACTTTGAGCCTATGGGGTTCGAATACGCCGAACAGAGGAGAGC
CAACGCTCTGACAAACGCGAAAACCGCCGCGGCGAACTCGCTAGTCCTCA
CCCGTACTTCTCTGCCGTCAACGACGGCAGGAGATACCAGCCGGGCGGGG
GCCGCGGCCGTCGGGGCAGGAGCGGGGGCTCCGGCGGGGACCGCGGTGGG
TGCATGTGCGAGGGTGATGCCGTTGCCGTTGACCAACAGAGGAGGTCGGC
CGGGAGCGGCGGCGCTCATGCCGTCGACGATAGCGACAGGTTCTTCCGCC
GGTGCGGGGGCCGTGCCGCCACTGCTGTTGCCGCCAACGGCGACAGGAGG
GGCTGCCGAGGGGGCGGGGGCCGTCCCGCCGCTGTTGTTGCCGTCAACGA
CGACAGGAGTTGCTGCCGAGGGCGCTGCGGGTGCCAGTGGCGGCGGGGTG
ATGGGAGGTGCGACCAGCAGGACCTACCGCAGCAACGCTGGAGAAGCCGC
CGCCCAGGACATCTCGCGCGGTAACTACGGGGGGGGGCGGCGTTTGCCTT
CAAGGCACCCGACCCTGGAGAGGGTTAAAGCGTTGACTCCGACAAGTGAT
GCAGAGCTGGAGGCCTTTGCCACCTGTCTCGCGGAAGCGACGATGGTCTG
CGACGGGAAGAGCCAGGTGATGACCGAGGCGACGAAACGTTACAACGCAA
GGTATTACAGACAAGCACTTACGGGTGGCGCGCCGAAACTTATCCGTGCG
CCTACTACGGTAGAGAAGGCGCGAAATCGATCCAAGATAGCGGCCAAGGC
AGGAAGGGACCGAGATGCCGCCGCCGACCTCGCAGCCGTGAACGAGATAT
CTCGAGTCAGGACGTCCTCTGCTTCGACTTCTACTTCGACACCGCCGCCA
GCATCGAAGCGCGCCAGAGGGGACAGAGATAGAGCGAGTGAAAGAGTCGC
TAGCGGGGTGCCTTTGAAGCTTGAACAGATCAGCACCCTCACGGACGCAG
CCGCGATCGCCTACATGAAAGCCATAGGGTTGAAGTTGACAGGCAATGTT
GCACTCAAGCGGAAGAAACTATCCGACTTTTTCGAAAGCAAGAATATTTC
AGAGTACAGGTACTCTCCGTCAAGGCCTGCGACATCGCCCGCGCCCGCCG
AAGGACCCGCCAGTGGGCACATGTCGATCCGAGGGTTGGGGACTCGAAAT
ATCTGCTGGTGTTGA