EsuBft2133_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2133_4a-0001
Unique Name	EsuBft2133_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:352785..353895 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2133_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	106
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_4a	EsuBft2133_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 352785..353895 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_4a-0001-exon	EsuBft2133_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 352785..353572 -
EsuBft2133_4a-0001-exon	agat-exon-26105	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 353616..353895 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_4a-0001-exon	agat-three_prime_utr-8361	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 352785..353288 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_4a-0001-cds	EsuBft2133_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 353289..353572 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2133_4a-0001	EsuBft2133_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 353289..353895 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:352785..353895-
coding sequence from alignment at Scaffold_68:352785..353895-

spliced messenger RNA

>EsuBft2133_4a-0001 ID=EsuBft2133_4a-0001|Name=EsuBft2133_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1068bp|location=Sequence derived from alignment at Scaffold_68:352785..353895- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAAGAACGTCCGCGCCAGCTACATCCTCGGCATCACCTTCATCGC
CGCTGTCGAGAAGAAGAAATGGGGGCACCAGAACTGTTGGGGCTACCACA
TCGTCGCCCTCTCCAACGACGTCACCATCATCGAACGCCTATCCAAGACG
CCCACCCTAGAAGCGATTGATCTCGCCTCTCGCCCTACTGCCGGCGCCGG
CGCTTCTTCCAACTGCCCCGGCACTAAAGAAAAACGAAAGGCTCCCTCAG
GCGCGCGACGAAAGCATGAAACCGCAAAGGAACCCGAAGAAGAAACCAAC
GACGAATACCCCGACGACGAACAGGACCCCGACTTTGCCCCCGGCGACGA
AGGGGACGACAACGAAGACAACGACGGCACTGACGATGCCGACAACGACG
ATGCCGACAACCGCGGCAACGGCAACGATGATTCCGGCTCCGACTATGCC
GACTCCGATGACGCCGCCTCCGACGACGGCTATGACACCGAATGGTGTTC
CCGTTTATCTGCCTTCCTTTGTTCGTTTGTTTGCCCTGAAGTCGGCCACC
TCTCTGCATCATAGTGTCCGCTTCGGTGTTTCCCCGCGTATGTTTTGCGT
GTTTGATCGCTGTTGCTTTCGCGTCTCGTCGGCTGTCTTTTCTTGAGTAC
TTTTGATTGTGTCCATCTTGAGTGCTTTTCTACGAATCTTCATGCCAAAC
GATCGTTGAGCGTACTTTGGTACCACGTACCGTTGTACCTTAACAACTGT
TGGCCCAAACGATCGATTGATTGTAGTTGTGCATCGTTTCCTTTACGGAC
CATTGAACTTTTTCTGCCCCCATTTGAGTTGTCGATCCACGCTATCGTCG
ACTATCTTTGCCGATGAATCTGATTGAGCATTGTTGCTCCGCATCATCGT
GTTCGCTGGGAATGTTCTTATCTTTTCCACGTGCCGTCGCTAAACTGGTT
TCCAATTTGATTTTCGATCTTCACGTTTGTTGGGTATGCGATTTCCGCTT
CATTTTGTGATTCCCGGTACTCGTCCAAATTTCCTTCTATTCTTGTGAAT
TTTGTTCCACAATTCAAT

protein sequence of EsuBft2133_4a-0001

>EsuBft2133_4 ID=EsuBft2133_4|Name=EsuBft2133_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MTKNVRASYILGITFIAAVEKKKWGHQNCWGYHIVALSNDVTIIERLSKT
PTLEAIDLASRPTAGAGASSNCPGTKEKRKAPSGARRKHETAKEPEEETN
DEYPDDEQDPDFAPGDEGDDNEDNDGTDDADNDDADNRGNGNDDSGSDYA
DSDDAASDDGYDTEWCSRLSAFLCSFVCPEVGHLSAS

mRNA from alignment at Scaffold_68:352785..353895-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2133_4a-0001 ID=EsuBft2133_4a-0001|Name=EsuBft2133_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1111bp|location=Sequence derived from alignment at Scaffold_68:352785..353895- (Ectocarpus subulatus male Bft15b)
ATGACCAAGAACGTCCGCGCCAGCTACATCCTCGGCATCACCTTCATCGC
CGCTGTCGAGAAGAAGAAATGGGGGCACCAGAACTGTTGGGGCTACCACA
TCGTCGCCCTCTCCAACGACGTCACCATCATCGAACGCCTATCCAAGACG
CCCACCCTAGAAGCGATTGATCTCGCCTCTCGCCCTACTGCCGGCGCCGG
CGCTTCTTCCAACTGCCCCGGCACTAAAGAAAAACGAAAGGCTCCCTCAG
GCGCGCGACGAAAGCATGAAACCGCAAAGGGTCCGATCCCCATCCCGTTC
CCGCGCCGACTTTTCTGGAGAAGAACCCGAAGAAGAAACCAACGACGAAT
ACCCCGACGACGAACAGGACCCCGACTTTGCCCCCGGCGACGAAGGGGAC
GACAACGAAGACAACGACGGCACTGACGATGCCGACAACGACGATGCCGA
CAACCGCGGCAACGGCAACGATGATTCCGGCTCCGACTATGCCGACTCCG
ATGACGCCGCCTCCGACGACGGCTATGACACCGAATGGTGTTCCCGTTTA
TCTGCCTTCCTTTGTTCGTTTGTTTGCCCTGAAGTCGGCCACCTCTCTGC
ATCATAGTGTCCGCTTCGGTGTTTCCCCGCGTATGTTTTGCGTGTTTGAT
CGCTGTTGCTTTCGCGTCTCGTCGGCTGTCTTTTCTTGAGTACTTTTGAT
TGTGTCCATCTTGAGTGCTTTTCTACGAATCTTCATGCCAAACGATCGTT
GAGCGTACTTTGGTACCACGTACCGTTGTACCTTAACAACTGTTGGCCCA
AACGATCGATTGATTGTAGTTGTGCATCGTTTCCTTTACGGACCATTGAA
CTTTTTCTGCCCCCATTTGAGTTGTCGATCCACGCTATCGTCGACTATCT
TTGCCGATGAATCTGATTGAGCATTGTTGCTCCGCATCATCGTGTTCGCT
GGGAATGTTCTTATCTTTTCCACGTGCCGTCGCTAAACTGGTTTCCAATT
TGATTTTCGATCTTCACGTTTGTTGGGTATGCGATTTCCGCTTCATTTTG
TGATTCCCGGTACTCGTCCAAATTTCCTTCTATTCTTGTGAATTTTGTTC
CACAATTCAAT

Coding sequence (CDS) from alignment at Scaffold_68:352785..353895-

>EsuBft2133_4a-0001 ID=EsuBft2133_4a-0001|Name=EsuBft2133_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_68:352785..353895- (Ectocarpus subulatus male Bft15b)
ATGACCAAGAACGTCCGCGCCAGCTACATCCTCGGCATCACCTTCATCGC
CGCTGTCGAGAAGAAGAAATGGGGGCACCAGAACTGTTGGGGCTACCACA
TCGTCGCCCTCTCCAACGACGTCACCATCATCGAACGCCTATCCAAGACG
CCCACCCTAGAAGCGATTGATCTCGCCTCTCGCCCTACTGCCGGCGCCGG
CGCTTCTTCCAACTGCCCCGGCACTAAAGAAAAACGAAAGGCTCCCTCAG
GCGCGCGACGAAAGCATGAAACCGCAAAGGAACCCGAAGAAGAAACCAAC
GACGAATACCCCGACGACGAACAGGACCCCGACTTTGCCCCCGGCGACGA
AGGGGACGACAACGAAGACAACGACGGCACTGACGATGCCGACAACGACG
ATGCCGACAACCGCGGCAACGGCAACGATGATTCCGGCTCCGACTATGCC
GACTCCGATGACGCCGCCTCCGACGACGGCTATGACACCGAATGGTGTTC
CCGTTTATCTGCCTTCCTTTGTTCGTTTGTTTGCCCTGAAGTCGGCCACC
TCTCTGCATCATAG