EsuBft2133_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2133_6a-0001
Unique NameEsuBft2133_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:335883..339151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog568076.XP_007817118.1
ProteomeIdEsuBft2133_6
Protein domainsIPR008906
Protein domainsIPR012337
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl4751|Fungi
Length118
Hectar predicted targeting categoryother localisation
Evalue9.96e-05
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,39UGI@33154|Opisthokonta,3P5TX@4751|Fungi,3QX04@4890|Ascomycota,21E0K@147550|Sordariomycetes
Date last modified2016-06-14
Date creation2016-06-14
DescriptionhAT family C-terminal dimerisation region
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0046983
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2133_6aEsuBft2133_6aEctocarpus subulatus male Bft15bgeneScaffold_68 335883..339151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2133_6a-0001EsuBft2133_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 335910..338550 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2133_6a-0001-exonagat-exon-26114Ectocarpus subulatus male Bft15bexonScaffold_68 335883..336065 +
EsuBft2133_6a-0001-exonagat-exon-26115Ectocarpus subulatus male Bft15bexonScaffold_68 336463..336570 +
EsuBft2133_6a-0001-exonagat-exon-26113Ectocarpus subulatus male Bft15bexonScaffold_68 337905..337937 +
EsuBft2133_6a-0001-exonagat-exon-26112Ectocarpus subulatus male Bft15bexonScaffold_68 338179..338974 +
EsuBft2133_6a-0001-exonEsuBft2133_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 339087..339151 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2133_6a-0001-exonagat-five_prime_utr-5411Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 335883..335909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2133_6a-0001-cdsEsuBft2133_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 335910..336065 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2133_6a-0001-exonagat-three_prime_utr-8363Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 338551..338974 +
EsuBft2133_6a-0001-exonagat-three_prime_utr-8364Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 339087..339151 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2133_6a-0001 ID=EsuBft2133_6a-0001|Name=EsuBft2133_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1185bp|location=Sequence derived from alignment at Scaffold_68:335883..339151+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCGCGAGCTCTTGTGCACGAAAATGAATGGTCGTCGACAAGTTCCTCCC
CTTCTCCTTCTTCTCTGGGAACTCGTGGAAGGATGTGATGGGCTTGGAGA
CCGCCGATGACACACCGTATCCTGCGCTTCCTAGCAGGCGCATCGAGCAC
CTCCTGGTGGAGATGTTCGTCGCCACCAAGAAGGCTGTGATGGGGAACAT
GTTGGAAGAGATCAAGAAGGCACCTCTGCCCATCGTTCACTACGGGGTCG
ACCTGTGGACGTGCAAGACTTCTGGGATGAAATTCATTGATCGCTTTCAG
GCGCTGTACATGACGGCAGAAGAGTTGGACACGCGGGAAGTACTGCCTTG
GTGGCGAAACACTGGTCGCAAGATGTTTCCGTACCTGGCGCCAGTAGCGC
AGCAGGTGCTTGGAAACCAGGCGGGTGCCGCGCAGGTAGAGCGCGACTTC
AGTAGTTGCGCTAATCTCCTCACGCGCAACAGGAGCCGCATCGACACCTA
CTGGGTAGAGATGGTGATGTTCCTCCACGTCAACTACAAGCGTATCCCCG
CGTTCAAGGACATTCCCATGATTGCCGCCAAGGATATCAGGACATGTCTG
CCGCCACGGTTCAACGGGGGGGATGCTGACCTGGCGGCCGCTGAGGCTGC
CTTCGACGTGATTGAGAACACCAACAACTCGGACATCGGCGTGTGAAAGT
CGCGAGCGTTTCATAAGTAGCCTCTTTCTTTGACTCCGTAAGAAGGACGT
AGCAGTCAAAGTAGGTTGAGTCGGAGTCGCATGGGAAGGCTAAGGCTTCT
GCTCTTGGGTGTTGTGTTACCGAACTTCAGTTTCGCGGTCGTAAACTAAG
TACTGCGCGGCTACGGCAGTTGATTTGATTTGAACGATAGGCTAATTTCA
GTGCTGGGTACGATTTCTATTTTGTTCAATGCTATAGCGCCCTTGCCCCT
CTTCCTGTACCTTCGTCGTAAACACGCACGTCGTCAAAGTCGTCATGTTC
TGCAGGGTAATTCACGGGTACCGCGTAAGTACCGGGGGCTCTTCTGTAGA
CACAGAGTTCCGTAACACCCCCTGTACCCTACAGAATATCTCTGTGCCGC
CCCCTGTATCCTACAGAATAGTTCTGTAGCACCCTCGCACAATACAGAAT
AGTTCTGTGAGTTCTGTGACACCCCCGGTACCCTA
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protein sequence of EsuBft2133_6a-0001

>EsuBft2133_6 ID=EsuBft2133_6|Name=EsuBft2133_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=222bp
MVVDKFLPFSFFSGNSWKDVMGLETADDTPYPALPSRRIEHLLVEMFVAT
KKAVMGNMLEEIKKAPLPIVHYGVDLWTCKTSGMKFIDRFQALYMTAEEL
DTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTR
NRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGDA
DLAAAEAAFDVIENTNNSDIGV
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mRNA from alignment at Scaffold_68:335883..339151+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2133_6a-0001 ID=EsuBft2133_6a-0001|Name=EsuBft2133_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3269bp|location=Sequence derived from alignment at Scaffold_68:335883..339151+ (Ectocarpus subulatus male Bft15b)
TTCGCGAGCTCTTGTGCACGAAAATGAATGGTCGTCGACAAGTTCCTCCC
CTTCTCCTTCTTCTCTGGGAACTCGTGGAAGGATGTGATGGGCTTGGAGA
CCGCCGATGACACACCGTATCCTGCGCTTCCTAGCAGGCGCATCGAGCAC
CTCCTGGTGGAGATGTTCGTCGCCACCAAGAAGGTCAGCATTGTTTTTTG
GCATATAATTCGTCAAACGTGAGAGGAATGTAATACAAAGTACATGCAAC
AGACATTATCCTTCATCATGTGGTTTTCTACTCGAGATTGCAACGTGAGT
GTTCACCCGCAAAAACACCCATTAGAAACACACGTTTTTACGCACTTTTT
TTCTATTGTTATATTTATCCTACAAACTCAAGTGATAAGGATTTTTCCGG
GTTTTAGGACACGGTTATATACACACATCAATATAAAAACATAAAAACAC
CATACTTGCCGAAAATGACAGCAAATAGTTTGTATTGGTCTTTGTTTTCC
CGAACGCTCGTTCAGGTCTATGGAGAGACTAACCGACATCATTTGTTGCC
TTGCGTCGTTCGGTTCCCCTCGGCCTGCAGGCTGTGATGGGGAACATGTT
GGAAGAGATCAAGAAGGCACCTCTGCCCATCGTTCACTACGGGGTCGACC
TGTGGACGTGCAAGACTTCTGGGATGAAATTCATTGATGTCCACGCGTTC
TTGGTCGACAGCAACTTCGAGCTGCGACACGTTCTTCTTGCTGTGAGTTG
GACAGCTGTTGTGTCTCTATCCCCCTTGCCCTCCGCAAGGTATTCGAAGC
GCTTACGGTGATACTTGATTATCAAAATTATTGTATAGCAGCAGCACGCA
TGCGTACGATGTGTATGTCAAGAAGAAGTTGTGATTTAGTTGCCTTTCAG
CGAGGTAGACGCGAAGGCCGTCTTCGAGGTACTCTCTGGGTGTACTGGCT
CCGCTGAAGATAATGTGTTTGTACACATTGTGAGATGTGAAACAAAACAA
CCACCCTTCGTATTTTTTGAGCCAGCGATCTCCCTCATCCTCCTCCTCGT
CAGTGCATAGTTTTGAGTGTGCATGAGCGTACAAGAGTAACAACGCTGTG
TCTTCCTACTGCTGTCGCTAAATGTACGTCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGACCCCGACGAGCCGCTGAAGGTGTTCGACATCCCGGCGACGCCGGTTT
CCCCGGAAGCAGAGCAGGCGGACGAGGAGGTCCCGAAGAAAAAGAAGTCG
CTGCCGCACAAGATGGTGGAGCCGGCTGCCTTGCGTCCCGTCGCCACCAA
GACCCGGGAGTTGCTCACCAAAACCCTCGTGGAGAAGTTGTACCGAAGGG
TTTGGGACCAGGACAGCGCCGACCCTTCTCCCTTCCGCAACGCCTCCGTG
CTGCTCACCCCGTCGTACAAAGACACCAACTTTCTCCAAGCGCATGCTTT
GACGGCTGCAGACTCGCAGCACCTTGACCAACGCAAAGCCCACTTGGCCC
CTACCATCGACACCGAGGTGGACCAGAAACTGAACGATTGCTGGGCGGAC
ATCAAAGCGAGGGCGTCGGAGGCTGCGCGGAAGAAACACTCGGCACGTGC
GACCGCAGAGGGCGGCCAACCACCTCTGAAGCGCCTCTCCACGCCGGCCA
CGAAAGCCAGGCCTAGGTTTGCTTCCCTGGCACGAAACAGGGTCCGCGGC
GATACTGAAGACGTGGGCGAGGGCGACAGCGAGGACAAGGTGCTCATGCA
GCAGGTCAGCCAAGAACTCGAGCGCTTTCAGGCGCTGTACATGACGGCAG
AAGAGGTGAGCTTCCTTGCAGTTTATATGAAAGTGTTGTTAATAATTTTA
ATTTTGGGCTTCAAGCGGGAGGGAGGGCCGGAAGGATCTGAGTTCACCGC
GGTCACAGGTCAAAGTAGGGATGCGAACTGCAAGAAGTTTCAGTTTGACT
TTTTTTTCCCGGTGGCGCAAAGTTGCACAGATGTGTTTCGTGTTGTTTTC
TTATCTTCGTCCCTGTCACCCTTGGATCTGTAATGCTGCTGTGCAGTTGG
ACACGCGGGAAGTACTGCCTTGGTGGCGAAACACTGGTCGCAAGATGTTT
CCGTACCTGGCGCCAGTAGCGCAGCAGGTGCTTGGAAACCAGGCGGGTGC
CGCGCAGGTAGAGCGCGACTTCAGTAGTTGCGCTAATCTCCTCACGCGCA
ACAGGAGCCGCATCGACACCTACTGGGTAGAGATGGTGATGTTCCTCCAC
GTCAACTACAAGCGTATCCCCGCGTTCAAGGACATTCCCATGATTGCCGC
CAAGGATATCAGGACATGTCTGCCGCCACGGTTCAACGGGGGGGATGCTG
ACCTGGCGGCCGCTGAGGCTGCCTTCGACGTGATTGAGAACACCAACAAC
TCGGACATCGGCGTGTGAAAGTCGCGAGCGTTTCATAAGTAGCCTCTTTC
TTTGACTCCGTAAGAAGGACGTAGCAGTCAAAGTAGGTTGAGTCGGAGTC
GCATGGGAAGGCTAAGGCTTCTGCTCTTGGGTGTTGTGTTACCGAACTTC
AGTTTCGCGGTCGTAAACTAAGTACTGCGCGGCTACGGCAGTTGATTTGA
TTTGAACGATAGGCTAATTTCAGTGCTGGGTACGATTTCTATTTTGTTCA
ATGCTATAGCGCCCTTGCCCCTCTTCCTGTACCTTCGTCGTAAACACGCA
CGTCGTCAAAGTCGTCATGTTCTGCAGGGTAATTCACGGGTACCGCGTAA
GTACCGGGGGCTCTTCTGTAGACACAGAGTTCCGTAACACCCCCTGTACC
CTACAGAATATCTCTGTGCCGCCCCCTGTATCCTACAGAATAGTTCTGTA
ACACCCTCGCACAATACAGAATAGTTCTGTAGCACCCTCGCACAATACAG
AATAGTTCTGTGGGTTCTGTAGCACCCTCGTACAATACAGAATAGTTCTG
TGAGGTTCTGTAGCACCCTCGCACAATACAGAATAGTTCTGTGAGTTCTG
TGACACCCCCGGTACCCTA
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Coding sequence (CDS) from alignment at Scaffold_68:335883..339151+

>EsuBft2133_6a-0001 ID=EsuBft2133_6a-0001|Name=EsuBft2133_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=669bp|location=Sequence derived from alignment at Scaffold_68:335883..339151+ (Ectocarpus subulatus male Bft15b)
ATGGTCGTCGACAAGTTCCTCCCCTTCTCCTTCTTCTCTGGGAACTCGTG
GAAGGATGTGATGGGCTTGGAGACCGCCGATGACACACCGTATCCTGCGC
TTCCTAGCAGGCGCATCGAGCACCTCCTGGTGGAGATGTTCGTCGCCACC
AAGAAGGCTGTGATGGGGAACATGTTGGAAGAGATCAAGAAGGCACCTCT
GCCCATCGTTCACTACGGGGTCGACCTGTGGACGTGCAAGACTTCTGGGA
TGAAATTCATTGATCGCTTTCAGGCGCTGTACATGACGGCAGAAGAGTTG
GACACGCGGGAAGTACTGCCTTGGTGGCGAAACACTGGTCGCAAGATGTT
TCCGTACCTGGCGCCAGTAGCGCAGCAGGTGCTTGGAAACCAGGCGGGTG
CCGCGCAGGTAGAGCGCGACTTCAGTAGTTGCGCTAATCTCCTCACGCGC
AACAGGAGCCGCATCGACACCTACTGGGTAGAGATGGTGATGTTCCTCCA
CGTCAACTACAAGCGTATCCCCGCGTTCAAGGACATTCCCATGATTGCCG
CCAAGGATATCAGGACATGTCTGCCGCCACGGTTCAACGGGGGGGATGCT
GACCTGGCGGCCGCTGAGGCTGCCTTCGACGTGATTGAGAACACCAACAA
CTCGGACATCGGCGTGTGA
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