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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 2880.D7FUC3 |
| ProteomeId | EsuBft957_6 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 65 |
| Hectar predicted targeting category | other localisation |
| Evalue | 7.94e-27 |
| EggNOG OGs | 2CYK8@1|root,2S4YE@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG rclass | RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 |
| KEGG ko | ko:K01188 |
| KEGG Reaction | R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 |
| KEGG Pathway | ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 |
| GOs | GO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772 |
| EC | 3.2.1.21 |
| CAZy | GH1 |
| BRITE | ko00000,ko00001,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft957_6a-0001 ID=EsuBft957_6a-0001|Name=EsuBft957_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=651bp|location=Sequence derived from alignment at Scaffold_68:254271..254921+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCAGCCAGCTGTGCCGGTTGCTTGATGTCCTCGACAGCAGTGTTGG
ATTGAATACCCTTAGGCTCGGTGGTGACCCATGGGCTGAACCACCAAAGT
CGAACGTTGTCAAAGGGCTGAAGAATATCAGAGGGTATTTCGAAGACCTG
TATGCGGAGCCCTGCCGGATCGAGAGTAGGAGCGTCAAGGTTGTCCTTGT
CGGTCAGGAATGCGCAGGGAAAACGAGGTCAGCTATGTGATGGTCCTGCT
GTTATCCGTCATACACTACTGCACTCTCACCGAACGTTGGTTGGTCGGAA
TCGTTCGATACAACGCAGTTGACACAGTGTGGTATTATATCAAGTTCGAT
CAACCATACTACAATCAGTTGTCGCTTTTCCCCAGAGAATTGTTTGTTTT
GTGGAGAGCGGTAGCCACACATGCCGTTTCACGCCTGAACCTTCCATGCG
CGGCTCTGATTGTACTTGGTCTTGTACCTAGAGTGAGTGAGTGATCGCAC
CACCTCTATACCGCGACTCTAATAGCTCGATCGCTCCAAAGCCGAAAACC
TGACGAGAGATGGAAGAATGTTCTCGACAACATCGTCCAAACCTCTCGTT
TCGGGACTGGTGCTCTTTTTGTTGTGGAGCAATTGAGTTTTTAAAGTCGG
T back to topprotein sequence of EsuBft957_6a-0001 >EsuBft957_6 ID=EsuBft957_6|Name=EsuBft957_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=79bp
MPSQLCRLLDVLDSSVGLNTLRLGGDPWAEPPKSNVVKGLKNIRGYFEDL
YAEPCRIESRSVKVVLVGQECAGKTRSAM back to topmRNA from alignment at Scaffold_68:254271..254921+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft957_6a-0001 ID=EsuBft957_6a-0001|Name=EsuBft957_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=651bp|location=Sequence derived from alignment at Scaffold_68:254271..254921+ (Ectocarpus subulatus male Bft15b)
ATGCCCAGCCAGCTGTGCCGGTTGCTTGATGTCCTCGACAGCAGTGTTGG
ATTGAATACCCTTAGGCTCGGTGGTGACCCATGGGCTGAACCACCAAAGT
CGAACGTTGTCAAAGGGCTGAAGAATATCAGAGGGTATTTCGAAGACCTG
TATGCGGAGCCCTGCCGGATCGAGAGTAGGAGCGTCAAGGTTGTCCTTGT
CGGTCAGGAATGCGCAGGGAAAACGAGGTCAGCTATGTGATGGTCCTGCT
GTTATCCGTCATACACTACTGCACTCTCACCGAACGTTGGTTGGTCGGAA
TCGTTCGATACAACGCAGTTGACACAGTGTGGTATTATATCAAGTTCGAT
CAACCATACTACAATCAGTTGTCGCTTTTCCCCAGAGAATTGTTTGTTTT
GTGGAGAGCGGTAGCCACACATGCCGTTTCACGCCTGAACCTTCCATGCG
CGGCTCTGATTGTACTTGGTCTTGTACCTAGAGTGAGTGAGTGATCGCAC
CACCTCTATACCGCGACTCTAATAGCTCGATCGCTCCAAAGCCGAAAACC
TGACGAGAGATGGAAGAATGTTCTCGACAACATCGTCCAAACCTCTCGTT
TCGGGACTGGTGCTCTTTTTGTTGTGGAGCAATTGAGTTTTTAAAGTCGG
T back to topCoding sequence (CDS) from alignment at Scaffold_68:254271..254921+ >EsuBft957_6a-0001 ID=EsuBft957_6a-0001|Name=EsuBft957_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=240bp|location=Sequence derived from alignment at Scaffold_68:254271..254921+ (Ectocarpus subulatus male Bft15b)
ATGCCCAGCCAGCTGTGCCGGTTGCTTGATGTCCTCGACAGCAGTGTTGG
ATTGAATACCCTTAGGCTCGGTGGTGACCCATGGGCTGAACCACCAAAGT
CGAACGTTGTCAAAGGGCTGAAGAATATCAGAGGGTATTTCGAAGACCTG
TATGCGGAGCCCTGCCGGATCGAGAGTAGGAGCGTCAAGGTTGTCCTTGT
CGGTCAGGAATGCGCAGGGAAAACGAGGTCAGCTATGTGA back to top
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