EsuBft957_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft957_6a-0001
Unique NameEsuBft957_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:254271..254921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FUC3
ProteomeIdEsuBft957_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length65
Hectar predicted targeting categoryother localisation
Evalue7.94e-27
EggNOG OGs2CYK8@1|root,2S4YE@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
EC3.2.1.21
CAZyGH1
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft957_6aEsuBft957_6aEctocarpus subulatus male Bft15bgeneScaffold_68 254271..254921 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_6a-0001-exonEsuBft957_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 254271..254921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_6a-0001-cdsEsuBft957_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 254271..254510 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_6a-0001-exonagat-three_prime_utr-23485Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 254511..254921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_6a-0001EsuBft957_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 254271..254510 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft957_6a-0001 ID=EsuBft957_6a-0001|Name=EsuBft957_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=651bp|location=Sequence derived from alignment at Scaffold_68:254271..254921+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCCAGCTGTGCCGGTTGCTTGATGTCCTCGACAGCAGTGTTGG
ATTGAATACCCTTAGGCTCGGTGGTGACCCATGGGCTGAACCACCAAAGT
CGAACGTTGTCAAAGGGCTGAAGAATATCAGAGGGTATTTCGAAGACCTG
TATGCGGAGCCCTGCCGGATCGAGAGTAGGAGCGTCAAGGTTGTCCTTGT
CGGTCAGGAATGCGCAGGGAAAACGAGGTCAGCTATGTGATGGTCCTGCT
GTTATCCGTCATACACTACTGCACTCTCACCGAACGTTGGTTGGTCGGAA
TCGTTCGATACAACGCAGTTGACACAGTGTGGTATTATATCAAGTTCGAT
CAACCATACTACAATCAGTTGTCGCTTTTCCCCAGAGAATTGTTTGTTTT
GTGGAGAGCGGTAGCCACACATGCCGTTTCACGCCTGAACCTTCCATGCG
CGGCTCTGATTGTACTTGGTCTTGTACCTAGAGTGAGTGAGTGATCGCAC
CACCTCTATACCGCGACTCTAATAGCTCGATCGCTCCAAAGCCGAAAACC
TGACGAGAGATGGAAGAATGTTCTCGACAACATCGTCCAAACCTCTCGTT
TCGGGACTGGTGCTCTTTTTGTTGTGGAGCAATTGAGTTTTTAAAGTCGG
T
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protein sequence of EsuBft957_6a-0001

>EsuBft957_6 ID=EsuBft957_6|Name=EsuBft957_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=79bp
MPSQLCRLLDVLDSSVGLNTLRLGGDPWAEPPKSNVVKGLKNIRGYFEDL
YAEPCRIESRSVKVVLVGQECAGKTRSAM
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mRNA from alignment at Scaffold_68:254271..254921+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft957_6a-0001 ID=EsuBft957_6a-0001|Name=EsuBft957_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=651bp|location=Sequence derived from alignment at Scaffold_68:254271..254921+ (Ectocarpus subulatus male Bft15b)
ATGCCCAGCCAGCTGTGCCGGTTGCTTGATGTCCTCGACAGCAGTGTTGG
ATTGAATACCCTTAGGCTCGGTGGTGACCCATGGGCTGAACCACCAAAGT
CGAACGTTGTCAAAGGGCTGAAGAATATCAGAGGGTATTTCGAAGACCTG
TATGCGGAGCCCTGCCGGATCGAGAGTAGGAGCGTCAAGGTTGTCCTTGT
CGGTCAGGAATGCGCAGGGAAAACGAGGTCAGCTATGTGATGGTCCTGCT
GTTATCCGTCATACACTACTGCACTCTCACCGAACGTTGGTTGGTCGGAA
TCGTTCGATACAACGCAGTTGACACAGTGTGGTATTATATCAAGTTCGAT
CAACCATACTACAATCAGTTGTCGCTTTTCCCCAGAGAATTGTTTGTTTT
GTGGAGAGCGGTAGCCACACATGCCGTTTCACGCCTGAACCTTCCATGCG
CGGCTCTGATTGTACTTGGTCTTGTACCTAGAGTGAGTGAGTGATCGCAC
CACCTCTATACCGCGACTCTAATAGCTCGATCGCTCCAAAGCCGAAAACC
TGACGAGAGATGGAAGAATGTTCTCGACAACATCGTCCAAACCTCTCGTT
TCGGGACTGGTGCTCTTTTTGTTGTGGAGCAATTGAGTTTTTAAAGTCGG
T
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Coding sequence (CDS) from alignment at Scaffold_68:254271..254921+

>EsuBft957_6a-0001 ID=EsuBft957_6a-0001|Name=EsuBft957_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=240bp|location=Sequence derived from alignment at Scaffold_68:254271..254921+ (Ectocarpus subulatus male Bft15b)
ATGCCCAGCCAGCTGTGCCGGTTGCTTGATGTCCTCGACAGCAGTGTTGG
ATTGAATACCCTTAGGCTCGGTGGTGACCCATGGGCTGAACCACCAAAGT
CGAACGTTGTCAAAGGGCTGAAGAATATCAGAGGGTATTTCGAAGACCTG
TATGCGGAGCCCTGCCGGATCGAGAGTAGGAGCGTCAAGGTTGTCCTTGT
CGGTCAGGAATGCGCAGGGAAAACGAGGTCAGCTATGTGA
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