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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LF46 |
| ProteomeId | EsuBft957_5 |
| Protein domains | IPR001611 |
| Protein domains | SSF52058 |
| Protein domains | G3DSA |
| Protein domains | PTHR24420 |
| Protein domains | IPR025875 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | probable lrr receptor-like serine threonine-protein kinase at4g08850 os:arabidopsis thaliana gn [Automatic annotation] |
| Nb exon | 9 |
| Max annot lvl | 2759|Eukaryota |
| Length | 828 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.19e-27 |
| EggNOG OGs | 2CYK8@1|root,2S4YE@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG rclass | RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 |
| KEGG ko | ko:K01188 |
| KEGG Reaction | R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 |
| KEGG Pathway | ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 |
| GOs | GO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772 |
| EC | 3.2.1.21 |
| CAZy | GH1 |
| BRITE | ko00000,ko00001,ko01000 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0010468 |
| GO | 0033993 |
| GO | 0004672 |
| GO | 0005975 |
| GO | 0048827 |
| GO | 0055085 |
| GO | 0009755 |
| GO | 0009753 |
| GO | 0097159 |
| GO | 0009611 |
| GO | 0009653 |
| GO | 0048513 |
| GO | 0097305 |
| GO | 0007242 |
| GO | 0016310 |
| GO | 0009791 |
| GO | 0042277 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft957_5a-0001 ID=EsuBft957_5a-0001|Name=EsuBft957_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=828bp|location=Sequence derived from alignment at Scaffold_68:246846..253620+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTGCGGGATACCGCACTCGCCCCTGCGACCCGTTTTATTCCTTTCGT
CGCAATGTCTTCCACGGACCGTGAAGCGCTGATTGCCCTGTTTCGTTCGA
CCGGCGGGGCTGGATGGTGGCGAAGAGACAACTGGGACACAGATGCTGTC
CTAGCTACATGGGATGGAGTCAACGTCAACGACCAGGGCCGAGTAGTCGG
GCTTAGTCTGATACGGAACAACCTCCAAGGCCCCATCCCATCGAAGCTGG
GGAACCTTTCAGCACTGACGGCGCTCTACCTTCAGCGCAACCAGCTGAGC
GGCACCATCCCGCCGGAGCTTGGAAAGCTCACCTCACTGCACATCCTAGC
CCTCAACCGGAACCAGCTGAGCGGCCCCATCCCATCCGAGCTGGAGCACC
TTTCAGTACTGCGGGGGCTTTTCCTTTCCGGCAACCAGCTGAGCGGCGAA
ATCCCGGCGTCGCTAGGACAGCTCGTCAAGCTGGAAACGCTCCGCCTCTA
CGTAAACAAACTCAGCGCGCTAGGAGCTCTCAGCAAGCTGCGGGACCTTG
AGCTCTGGAGCAACAAGCAAACCGGCAACACCCCCCCAGAGCTAGGAGAT
CTCCGACAGCTGCAGGAGCTGTAGCTCAGCGAAAACCACCTCACAGGAAC
AATACCGAAGAAGGAGCTAGGGGAGCTAACTGCGCTACAGGAGCTTCGCC
TTCTCAGTAACCAGCTTTCAGGCCCCATCCCACGGAAGCTTGGAGATCTC
CGAGAGCTGCGGCGGCGGTGGCTCTACAACAACAAGCTCGCAGCTCTCTG
GTACCACGCCCAAAAGGTTCAAGATGTC back to topprotein sequence of EsuBft957_5a-0001 >EsuBft957_5 ID=EsuBft957_5|Name=EsuBft957_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=207bp
MLRDTALAPATRFIPFVAMSSTDREALIALFRSTGGAGWWRRDNWDTDAV
LATWDGVNVNDQGRVVGLSLIRNNLQGPIPSKLGNLSALTALYLQRNQLS
GTIPPELGKLTSLHILALNRNQLSGPIPSELEHLSVLRGLFLSGNQLSGE
IPASLGQLVKLETLRLYVNKLSALGALSKLRDLELWSNKQTGNTPPELGD
LRQLQEL back to topmRNA from alignment at Scaffold_68:246846..253620+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft957_5a-0001 ID=EsuBft957_5a-0001|Name=EsuBft957_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6775bp|location=Sequence derived from alignment at Scaffold_68:246846..253620+ (Ectocarpus subulatus male Bft15b)
ATGTTGGTTACTTTGATTCCTCCGCAGAAAAGGCAGATTGGGACGGGGTC
AAACAAGGAGGGGAGGACTTACCAGAGCTCTGGGTTCAAAGTCTTGGAGT
GGTGGCCTTCAAAACGAGAGGAGCGTGATACTGCAAGCGGGATACCGCAC
TCGCCCCTGCGACCCGTTTTATTCCTTTCGTCGGTGAGTTGACTTCCCGA
TTTGTTCTCTGCACCTTGAGCTTGCTTTCAGTCTTCTTGGTACACTTCCT
CTTGGTCGAGGCGTGCCCACAGGTGTTCTTGCCATCTGGAAAGAATGCCG
CGGCCAGCTGTATGATGTATTTTCCTTTCCAGTTACGGACAAGTGCTCTG
TGTGAGCATGGAGCTACGCTGTTTGTGTCCGCGCTGTTTATCCAAATCTG
CGAGCAGAAAAAAACGGTGCTGCTGTATCCCAACATCCACGTGCGTTCGC
GCCGGCGGGAACGGGGGAGCGCGTTGGCTTGTGAGAGTAGACGGTCTATA
GTACTTAGCTTCTCTTAAGCGGTTCATCGAAATCCCACCAACGTAGTCTA
TTGCACTATGCATAACAGTGGACAGCTTTCAGGCTGGCATTGCCGGGCGT
CTTTGCAGTACTGCCGGTTGCACCTGTTCTCAATTCTCCCGCATTCTCCC
TTGATCTTTGGTGATCGAGAGGCGCCATGAGTCCAAATCGCAAGCAAGTT
GGCGGGGTGTTTGGGGATTGAAATTGCTGAGGCCGTGTCGCCAAATCGAC
TCCGCGCAGGTTCCCTGAGCAATGTCTTCCACGGACCGTGAAGCGCTGAT
TGCCCTGTTTCGTTCGACCGGCGGGGCTGGATGGTGGCGAAGAGACAACT
GGGACACAGATGCTGTCCTAGCTACATGGGATGGAGTCAACGTCAACGAC
CAGGGCCGAGTAGTCGGGCTTAGTCTGATACGGAACAACCTCCAAGGTTA
GTTCTTCGGCATTTGGAGCTTGCACGTGGATTCCTGTAGAGATAAATGTG
CTTGGCGATCCATCCGAATTCGTGCTGAATCCTTGCATCTTCTAGAAAAC
GTGTCCTCCCTGCGGCGTTGCTGTCCATATGCGTTTCTACAGAAGTCGGG
ATTTATGCTTGGTTTCAAGCTTGGAACGAGGAACACCGTATGTTCCTGCG
CCTACATTGTGACTCACCGCTGAGCAGGGTACTCCAAAGGTAGCCTATCC
TAACGATATCCCTTCCCGCCATTTCAACCCACCTCCTATGCCCCAGTACA
GCTACCGTCCTTTCCTCTCTATTCCATGCCTCAAACATCTCCCTGTACAT
CCCATCTATTTTTCCCAGCTCAGTCACGTACACTTCCCTCTCCTCTGCTT
CTTGTATCACGGACATTCCGCGACTACATGAACACGGTCTTCGCATGCCG
CAATCACATTTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCTATGTCCCCGGTCCTGAATTTGACCTTACGTTTTGTTCCT
GCGTCCATTGGTCCATGTAGGTAATCCTTGAACCCTATTCCTTCCTTCAA
TATTCCGTGCACTTCTAGACCCTCCTTATCCTTGGTTTCTTTAGATTCTG
TTCTTCTCTCTCGGCACAAGCAACAGATATCTTATCCTTGAACCCCTTTA
GAGCCTCCGTTTCCAGCGTTTCATCTTTGTCGATGTCGAGCCCCTTCCAT
ACGTCCTCTACAACCTTGACCCATTCCGTGGGTTGTCTACCCCTCTTTTT
GTTTGCCCACTTCGCCTCCCATACAATTCTCGGCAACCTCTCCTCTCCCA
TCCCGCACATGCGATACTGCCAGGTCAGCTTCCTCGCGTCTCTTCCCGAC
CGTAGGGATTGGATCCCCAATTCTGCCCTCACGGCTGCATTACTTGTGCG
CGTGGAGCATCCTAGGATGATTTTCGCTGCTTTCATCTGCGCCGCCTCGA
GTTCTTTCACTACCTTCTTATTTCCTTCCCATACTTCTCCGGCGTACCCT
AGCGGCGGTACGATTACGCTCTTCAAAACCTTCAATTTGATGCGTGTATC
GAGGTGCCGCTTTGCGAGTATTGGATGCAGCTTCCCTGCTCGTGCTTTGC
CCTTTTCCGCTACCTTGGACATGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAGAGGTAAAAAAAAAAAA
ACGGTAACCTGGTTGCCGAGTTCGCGAAGTGAATTGGCTTGTTTTACAAC
GTCGTTGCCAAGCGACGAAAACCCAATCCCGATGGCAAACACCGAGGGGG
GATTATTTTTCTTTGTCCCGCTCAATTACCCGTTCCATCCGTCCGCTTGC
AGGCCCCATCCCATCGAAGCTGGGGAACCTTTCAGCACTGACGGCGCTCT
ACCTTCAGCGCAACCAGCTGAGCGGTGAGTCAACCCAAAGTTGGATAGCT
CTTTCCCGACCGACTTTGCATGAGTCCCGTGTATGAATCTCGCCGAGTAT
GCATACGCGGGATTCATGCATGTTCAGAACTCGAAGAGAATAAAATGTAT
TTCGAAGTGTTCAACTCACCATCAAACTTGTTGCCGTAAAGGTTGAGGTA
CTTGAGGGCGCCAAGATTCCGAGCTGCGGCGGGATATGGCCTGTAGGCGA
GGGACTCAAAGCGGGGCAGTTGGGCACGGTACAGAAAGTTTTCCCGCTAG
TTGTGAAATTCGTACCCGTCTAGCGTTGGCAGGACCGTTTTTCCAGACTT
GACGCCGGAGCATTTATTTTGTTTTCCCCCGCTAATTCATCTGGCAGGCA
CCATCCCGCCGGAGCTTGGAAAGCTCACCTCACTGCACATCCTAGCCCTC
AACCGGAACCAGCTGAGCGGTGAGTCACCAGGGCGTAGCTGGCAGGTGAA
CAAAATGAGTTCCCCGGCGTCTGTTATAGTCTTGAAAACGGTCCTGCCAA
CGTAGCAGGAGGGACAAGATCTACGGAGATCAGTTGTCTTTAAAATAGAG
AGGCGGTTTCATATAATCTTTTGTGCCCTCTTGATTTCTATCACGCTCCT
GCTTACAGGCCCCATCCCATCCGAGCTGGAGCACCTTTCAGTACTGCGGG
GGCTTTTCCTTTCCGGCAACCAGCTGAGCGGTGAGTCAACACGATAGTTT
ATAGCTCTTACCCGATCGATTTTGCGTGAGTCCGTGCATGAATCTCGCCG
ATGTGAATTTCGGCAATGCATCGGCGAGATTCATCCATGGATCAATGCTA
GAAAATTGAATCCGACCACAAAAAAAAAATAGGTACCTGTGAGGTGGTTG
TCGTTGAGCCACAGACTCTGCAGCTGTCGGAGACCTCCTAGCTCTGGCGG
GATGTTGCCAGCCAGACGAAGGGAAAATAAGAAGTTGGCGGGAGAAAACA
AAATTAATCCCCCGGCGTCTTGAAAAACGGTCCTGCCAACGCGTAGCAAA
AGATGTCCCGCGGGCTCCGCAATTGTGAAATGCCGCACTCGCTTACGCAT
CGGCGAGATTCATCCATGGATCAGTGCTAGAAAAAAAATAATCCGACCAT
CAAAATAAAATAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGG
TAGGTACCTGTGAGGTGGTTGTGGTTGAGCCACAGCTGCTGCAGCTGTCA
GAAATATCCTAGCTCTGGCGGGATGTTGCCTGCCAGACGAAGGGAAAATA
TGAACATACGCGGATTTCATGCATGTTCAGAGCTCGAAGGAAAATATAAT
GCATTTCGAAATGTTCAACTCACCATCAAAGTTGTTGTCGAGGTCGAGGT
ACTCGAGGGCGCCAAGATTTCCTAGCTGCGGCGGGGTATGCCCTGTAGAC
GAGAGACTCAGCGCAGGGCAGTTGGGCATGGTACAGAAAAGTTATCTCGC
GAGTTCTGAAATTTCGTACCCGCCTACTTGTAGGCGAGTAGGAAATTTCA
CAATTTCGGAACTCGCGGGATACTTTTGCTACGCACGAAACGACTCTTGC
CATCCCCCAAATACCAAATACCATGCAGGCGAAATCCCGGCGTCGCTAGG
ACAGCTCGTCAAGCTGGAAACGCTCCGCCTCTACGTAAACAAACTCAGCG
GTAAGTGTCTCCGATTTGTTCGGCGTGCACGCGTCACACTGGATTGCTTA
ATCCCGCCTCTGCGTTGGCGGGTACGAAATGTCACAATTGCACGTAGCAA
AAGATGTCCCGCGAGTCCCGCAATTGTGATATTTCGTACCAGGACACATC
TTCGAGAACAATTTGTGAATATACCCCTTTTTTTGTCCGCTGCCGTGTAC
TTGCATGTCACATCCCCAAAGCGCTAGGAGCTCTCAGCAAGCTGCGGGAC
CTTGAGCTCTGGAGCAACAAGCAAACCGGTGAGGGGGTGCTTCACAGCCA
ATTCCACATTTTTTCTCGAACATGTGTCCTGCCAAAGCGTTGGCAGGACC
GTTGTTCTAGACGCCGGAGGATTAAGTTTGTTTTTTCCCGCCAACTTCTT
ATTTTTCCTTGTTTGGCAGGCAACACCCCCCCAGAGCTAGGAGATCTCCG
ACAGCTGCAGGAGCTGTAGCTCAGCGAAAACCACCTCACAGGTACCTTAT
TTTGATGCCGGTTTAAATTTTTTCTAGCTTTGATCTATGGATTAATCTCG
CGGATGCAGTTGGCATTTACTGACGCGTAGGCGAGTAGGTACTCTGTAAG
CCGGGATGTTTTTTTATTTTTCATGACGATTTTTTTTCTCACCATACAGT
TGTTAAACACACAGGAACAATACCGAAGAAGGAGCTAGGGGAGCTAACTG
CGCTACAGGAGCTTCGCCTTCTCAGTAACCAGCTTTCAGGTGAGCACTGG
ACTTGTGTAGAATTATGCATGAACACCGCTTACTGCGTGGGCGAGTACGA
AAATTCACAATTGCGGAACTCGCGGGACATCTTCTGCTACGCCCTGGTGA
TTAGTTGTTCTCGAAAGCGGGTAGCTGCATTGTTTTTTCCTCGATGACCT
CGTTTTGCTCTTCTGCTTGCAGGCCCCATCCCACGGAAGCTTGGAGATCT
CCGAGAGCTGCGGCGGCGGTGGCTCTACAACAACAAGCTCGCAGGTAAGC
TTGTTGTTTTGGCGTCGTTTCAATATATTGTTAGTGTTGATTCTGAATGA
ACCGCGTTGGCGTCCACTTACGTGTTGGTGAGTAGGCATTTCTAGAAGTC
GGAAAATTCATTGTTAATCCCCCGCGAACATTGTACTTTCTCTTCTGCTT
GCAGGCCCCATTCCACCCGTGCTGGGGAACCTTGCGGCACTAGATGCGCT
CTACCTTTAATATAACCAGCTCAGCGGTGTCACAATTTTTGGCACAGGAA
TGTACGGTGTTCCTCATTTCAACGTTTAAAACTTGAACTCAAGCGTCACT
CGAGGGTTCGGCAACTGACGAGATCTGCCTCACCGATTTCAGCTGAATGA
ATGAGTTGTTGATATGCCTAACGACATTCAATCGTCCAGGAATAGACGAA
CTCGAAATTCGACGAGGAGCAGAAACGGGTGCCCCCACACGACTAGGTAT
AATCTGCACATGCAGGAGCTTTGATCAACGGCCGTGTCATTCTTCGTTTT
GATACAGGAATAGCCAAGACTGTCGTCACAGGTTGCTCGGTAGGCTTTGA
GGCCACGGTTCCGTCGCGGCAGTCGGTGATGTGATCTTGCGTCTGACCTA
CGTGCTTTTTGTATCCCGAGCATGTCCACGACCTTGCCCTTCGACATCAC
TCCTTTATTTGCTGAATCCATTCACTCTGGTCCGGCTCTGTTTGGCTGCC
TGCGTTTACCTCTGTTTGGCACTCTCGGTTTGCTTGGCAGCTCTCTGGTA
CCACGCCCAAAAGGTTCAAGATGTC back to topCoding sequence (CDS) from alignment at Scaffold_68:246846..253620+ >EsuBft957_5a-0001 ID=EsuBft957_5a-0001|Name=EsuBft957_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=624bp|location=Sequence derived from alignment at Scaffold_68:246846..253620+ (Ectocarpus subulatus male Bft15b)
ATGTTGCGGGATACCGCACTCGCCCCTGCGACCCGTTTTATTCCTTTCGT
CGCAATGTCTTCCACGGACCGTGAAGCGCTGATTGCCCTGTTTCGTTCGA
CCGGCGGGGCTGGATGGTGGCGAAGAGACAACTGGGACACAGATGCTGTC
CTAGCTACATGGGATGGAGTCAACGTCAACGACCAGGGCCGAGTAGTCGG
GCTTAGTCTGATACGGAACAACCTCCAAGGCCCCATCCCATCGAAGCTGG
GGAACCTTTCAGCACTGACGGCGCTCTACCTTCAGCGCAACCAGCTGAGC
GGCACCATCCCGCCGGAGCTTGGAAAGCTCACCTCACTGCACATCCTAGC
CCTCAACCGGAACCAGCTGAGCGGCCCCATCCCATCCGAGCTGGAGCACC
TTTCAGTACTGCGGGGGCTTTTCCTTTCCGGCAACCAGCTGAGCGGCGAA
ATCCCGGCGTCGCTAGGACAGCTCGTCAAGCTGGAAACGCTCCGCCTCTA
CGTAAACAAACTCAGCGCGCTAGGAGCTCTCAGCAAGCTGCGGGACCTTG
AGCTCTGGAGCAACAAGCAAACCGGCAACACCCCCCCAGAGCTAGGAGAT
CTCCGACAGCTGCAGGAGCTGTAG back to top
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