EsuBft1944_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1944_3a-0001
Unique Name	EsuBft1944_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:210951..213043 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1944_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	209
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_3a	EsuBft1944_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 210951..213043 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_3a-0001-exon	EsuBft1944_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 210951..213043 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_3a-0001-exon	agat-five_prime_utr-4713	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_68 210951..211012 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_3a-0001-cds	EsuBft1944_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 211013..211237 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_3a-0001-exon	agat-three_prime_utr-7222	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 211238..213043 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_3a-0001	EsuBft1944_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 211013..211237 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:210951..213043+
coding sequence from alignment at Scaffold_68:210951..213043+

spliced messenger RNA

>EsuBft1944_3a-0001 ID=EsuBft1944_3a-0001|Name=EsuBft1944_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2093bp|location=Sequence derived from alignment at Scaffold_68:210951..213043+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCATCCTTCTACTCTCGCGGAATATCTCTTCCGTTCCACACCTT
GACGAGGATGGTATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTCATCGA
TCTTGAGCAACTCGGCAGGGAGGGAGTCATGGCCGGGTGCCTTCCAGTTC
TTGAGGCCTTTCGTTGCCCGTGCCACCTCCTCGAGTTCTGGCACATCTCC
CAACCGTTGAGTGTCACGTGTCGCTGGCCGCTGCGTCACTCGTTCGATGG
TGTCTGGGTTCAGGGTGGGGGATTTGGTGTTGAGTAGGGTGCTGAAGAAT
CTCGCCCACCGCTGGAGGATGTCGTCCCTGTTCCGGAGCAACACGCCGTT
CTCATCCGCGACGAACTGCTGTCCGCCCGCTTGTCTCCCACTGAGGAACA
CTGATCTCTTGAGGTCTTGGTACAGTCCTCGCATGTCGCGATCTTTGTAG
ATTTCTTCGAGCTCACTCACATATCCGTCCAGGTGGGCTTAAATGCCCGT
TTCGACTGCTGTAGCCACTCCCTTACACGCTGCTTTGAGAACCCTCCACG
TCGCTGAGTTCCAGTTGCCCCTCATCGCCCGGCGCGCTTCCCGACGTTTG
GTAAGGGCCTGCTCCAGCGCTGCTCGTGTCTCTGGGGTCCCACACCACTC
CTGCGTGCGGCGTCTCCGCGGTTCCTCCCCCAGGGTCGTCCGCGCTGCGT
CGAGGAGAGCATTGGTAAAGTCGGGCGCCGATTCCGCGGCGGTGGTTGTT
CGCTCGTCCAGTCGTGTGTCGAGGTTGAGGAGGAACCGATTAGTCACCGC
ACACCGTGCTGCTTCGAACTGCAATTCCCGTCGGTTGAATTGCTACTGTT
TCGGTTTAGTCCGGACTGCACGGTTGTGGGCAAGCCTGCCACCGAGGTTG
ACGGTGGCTACTACCATATTGTGGTCTGAGTCTGCTTTGACTGGGCGAAC
CGGCTGGGCGATGACGACCACGTTAGATACTCGGCCGTGATGTGCCTGCC
TTGTCAGGATGTAGTCAAGGCGCTTGCAATCGTTTCGCGACACACCGTTG
TAGGTGTGCCATATTCCGCCCTTACGTGTCTCAAAGAACGTGTTCGTGAG
AGCTAGCCTGTTTTCCGTTGCAAAGTTCAACAGTAGCATGCCATTGTCGT
TGAGCTTATCACGCCCGTACATTCCTATTACCCTTCCGTCCTCTCCGTCC
AACCTATCTCCCGTCCGCGCGTTGGCGTCCAGTAGGACATACACACATTC
TTTGGAAGGGATCCTCCGCACGAAACTGTCAAGTTTTCCCCAGAACACGC
GCTTGCTGTCGGCGGTTGAAGGTTCGGTTGGAGCATACGCGGCTACGAAG
TTGACCGCCCCACGGTGGCCTGCCAACAGAAACCTCATGGCCAAAAGGGC
GTTCGTCGATAAACTCCGTAGTGAACGTGGATGTCTGGCACAGTGACTCT
TTGACGGCTATCCCCACACCATGGACTCCACCAGTCTCCGTGCCACAGCC
GAACACCCGGAAACCCGCTGCTGCAAATTCCGTTCGACCTGCCATCCGTG
TCTCCTGCATTCCTACCACCGATACGTCTTGTCTCCCTGCCTCGTGTAGA
ACGCTGTAAGCTCGCCCGTATCCATTGGCCCCGTTTACAGCCAAAGTCCG
CACATTCCAGGTTGCTACCCCTAGAAGTTGACCCTGCTGTCTCTTTCGCG
CGGCGCGCGCTACTCTCTCAGCTAGCCTACCCGCCGCCCGACCCCTCCTT
TTCCTCCATCTTCCCCTCTTTTTACTATTTTCTTGCGAACACTCGGGCGA
ACGTGATCGTTACCCCGGTTCTTGCCTTGTTTCTCATAGAGTTGTCTTCT
TGTCTCGGAGCGGTGTGGCCCTCCATCTCTGGACTCTCTCCTTTCCCCTC
TCTGGGGCATACCCCCACGGCGTGCGGCCACTCCGCCACCCTCACCGTGC
TCTCTGCTGCTGCATAGCCCCGGTGTCCAAGCCGGGGCGTCAGGATCCAG
TCTCATTTTGCAGCTACCAAAGCTGGCGGCTCAGTAGCTACCCCGATCTC
ACGACAGCAGTAACTCCCAACCGCCGAACTCAGGATCCCCCTC

protein sequence of EsuBft1944_3a-0001

>EsuBft1944_3 ID=EsuBft1944_3|Name=EsuBft1944_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=74bp
MEVSQDEGFVVIDLEQLGREGVMAGCLPVLEAFRCPCHLLEFWHISQPLS
VTCRWPLRHSFDGVWVQGGGFGVE

mRNA from alignment at Scaffold_68:210951..213043+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1944_3a-0001 ID=EsuBft1944_3a-0001|Name=EsuBft1944_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2093bp|location=Sequence derived from alignment at Scaffold_68:210951..213043+ (Ectocarpus subulatus male Bft15b)
ATGGTTGCATCCTTCTACTCTCGCGGAATATCTCTTCCGTTCCACACCTT
GACGAGGATGGTATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTCATCGA
TCTTGAGCAACTCGGCAGGGAGGGAGTCATGGCCGGGTGCCTTCCAGTTC
TTGAGGCCTTTCGTTGCCCGTGCCACCTCCTCGAGTTCTGGCACATCTCC
CAACCGTTGAGTGTCACGTGTCGCTGGCCGCTGCGTCACTCGTTCGATGG
TGTCTGGGTTCAGGGTGGGGGATTTGGTGTTGAGTAGGGTGCTGAAGAAT
CTCGCCCACCGCTGGAGGATGTCGTCCCTGTTCCGGAGCAACACGCCGTT
CTCATCCGCGACGAACTGCTGTCCGCCCGCTTGTCTCCCACTGAGGAACA
CTGATCTCTTGAGGTCTTGGTACAGTCCTCGCATGTCGCGATCTTTGTAG
ATTTCTTCGAGCTCACTCACATATCCGTCCAGGTGGGCTTAAATGCCCGT
TTCGACTGCTGTAGCCACTCCCTTACACGCTGCTTTGAGAACCCTCCACG
TCGCTGAGTTCCAGTTGCCCCTCATCGCCCGGCGCGCTTCCCGACGTTTG
GTAAGGGCCTGCTCCAGCGCTGCTCGTGTCTCTGGGGTCCCACACCACTC
CTGCGTGCGGCGTCTCCGCGGTTCCTCCCCCAGGGTCGTCCGCGCTGCGT
CGAGGAGAGCATTGGTAAAGTCGGGCGCCGATTCCGCGGCGGTGGTTGTT
CGCTCGTCCAGTCGTGTGTCGAGGTTGAGGAGGAACCGATTAGTCACCGC
ACACCGTGCTGCTTCGAACTGCAATTCCCGTCGGTTGAATTGCTACTGTT
TCGGTTTAGTCCGGACTGCACGGTTGTGGGCAAGCCTGCCACCGAGGTTG
ACGGTGGCTACTACCATATTGTGGTCTGAGTCTGCTTTGACTGGGCGAAC
CGGCTGGGCGATGACGACCACGTTAGATACTCGGCCGTGATGTGCCTGCC
TTGTCAGGATGTAGTCAAGGCGCTTGCAATCGTTTCGCGACACACCGTTG
TAGGTGTGCCATATTCCGCCCTTACGTGTCTCAAAGAACGTGTTCGTGAG
AGCTAGCCTGTTTTCCGTTGCAAAGTTCAACAGTAGCATGCCATTGTCGT
TGAGCTTATCACGCCCGTACATTCCTATTACCCTTCCGTCCTCTCCGTCC
AACCTATCTCCCGTCCGCGCGTTGGCGTCCAGTAGGACATACACACATTC
TTTGGAAGGGATCCTCCGCACGAAACTGTCAAGTTTTCCCCAGAACACGC
GCTTGCTGTCGGCGGTTGAAGGTTCGGTTGGAGCATACGCGGCTACGAAG
TTGACCGCCCCACGGTGGCCTGCCAACAGAAACCTCATGGCCAAAAGGGC
GTTCGTCGATAAACTCCGTAGTGAACGTGGATGTCTGGCACAGTGACTCT
TTGACGGCTATCCCCACACCATGGACTCCACCAGTCTCCGTGCCACAGCC
GAACACCCGGAAACCCGCTGCTGCAAATTCCGTTCGACCTGCCATCCGTG
TCTCCTGCATTCCTACCACCGATACGTCTTGTCTCCCTGCCTCGTGTAGA
ACGCTGTAAGCTCGCCCGTATCCATTGGCCCCGTTTACAGCCAAAGTCCG
CACATTCCAGGTTGCTACCCCTAGAAGTTGACCCTGCTGTCTCTTTCGCG
CGGCGCGCGCTACTCTCTCAGCTAGCCTACCCGCCGCCCGACCCCTCCTT
TTCCTCCATCTTCCCCTCTTTTTACTATTTTCTTGCGAACACTCGGGCGA
ACGTGATCGTTACCCCGGTTCTTGCCTTGTTTCTCATAGAGTTGTCTTCT
TGTCTCGGAGCGGTGTGGCCCTCCATCTCTGGACTCTCTCCTTTCCCCTC
TCTGGGGCATACCCCCACGGCGTGCGGCCACTCCGCCACCCTCACCGTGC
TCTCTGCTGCTGCATAGCCCCGGTGTCCAAGCCGGGGCGTCAGGATCCAG
TCTCATTTTGCAGCTACCAAAGCTGGCGGCTCAGTAGCTACCCCGATCTC
ACGACAGCAGTAACTCCCAACCGCCGAACTCAGGATCCCCCTC

Coding sequence (CDS) from alignment at Scaffold_68:210951..213043+

>EsuBft1944_3a-0001 ID=EsuBft1944_3a-0001|Name=EsuBft1944_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=225bp|location=Sequence derived from alignment at Scaffold_68:210951..213043+ (Ectocarpus subulatus male Bft15b)
ATGGAGGTGTCCCAGGACGAAGGGTTCGTCGTCATCGATCTTGAGCAACT
CGGCAGGGAGGGAGTCATGGCCGGGTGCCTTCCAGTTCTTGAGGCCTTTC
GTTGCCCGTGCCACCTCCTCGAGTTCTGGCACATCTCCCAACCGTTGAGT
GTCACGTGTCGCTGGCCGCTGCGTCACTCGTTCGATGGTGTCTGGGTTCA
GGGTGGGGGATTTGGTGTTGAGTAG