EsuBft1944_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1944_4a-0001
Unique NameEsuBft1944_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:210236..210949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000001213
ProteomeIdEsuBft1944_4
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length714
Evalue5.77e-27
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
EC2.7.7.49
EC3.1.21.4
GO0003964
GO0009036
GO0032199
GO0000737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_4aEsuBft1944_4aEctocarpus subulatus male Bft15bgeneScaffold_68 210236..210949 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_4a-0001-exonEsuBft1944_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 210236..210949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_4a-0001-cdsEsuBft1944_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 210236..210766 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_4a-0001-exonagat-five_prime_utr-4714Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 210767..210949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1944_4a-0001EsuBft1944_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 210236..210766 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1944_4a-0001 ID=EsuBft1944_4a-0001|Name=EsuBft1944_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=714bp|location=Sequence derived from alignment at Scaffold_68:210236..210949- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAGGTGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGG
GATTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCA
ACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAG
TGCGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCG
CCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCT
TCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGG
AAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATTCG
CCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAAC
TATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTA
TCCCCACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGT
TATCCGATTCAGCGAGGATGATGTTTTTCTGCGGAGCCTGGTGTGCTTGG
AGGAGGGGAAGACGGAAGCGGGGGGGGGAAAGGAGACACCCCTTGACCGA
GTACGGAGGGCAGTATGGGGGATGGACTTGTATGCCGATGATGCCGGCGT
CGTATCAAGGTCTGCAGCAGGACTGGCGAGAATGATGACCATCATCGTTG
AGGTGTTCGNNNNN
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protein sequence of EsuBft1944_4a-0001

>EsuBft1944_4 ID=EsuBft1944_4|Name=EsuBft1944_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=177bp
MLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAK
LIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPLLFNIFFAE
VLEVVVIRFSEDDVFLRSLVCLEEGKTEAGGGKETPLDRVRRAVWGMDLY
ADDAGVVSRSAAGLARMMTIIVEVFXX
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mRNA from alignment at Scaffold_68:210236..210949-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1944_4a-0001 ID=EsuBft1944_4a-0001|Name=EsuBft1944_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=714bp|location=Sequence derived from alignment at Scaffold_68:210236..210949- (Ectocarpus subulatus male Bft15b)
AAGGTGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGG
GATTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCA
ACCGTCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAG
TGCGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCG
CCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCT
TCGTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGG
AAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATTCG
CCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAAC
TATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTA
TCCCCACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGT
TATCCGATTCAGCGAGGATGATGTTTTTCTGCGGAGCCTGGTGTGCTTGG
AGGAGGGGAAGACGGAAGCGGGGGGGGGAAAGGAGACACCCCTTGACCGA
GTACGGAGGGCAGTATGGGGGATGGACTTGTATGCCGATGATGCCGGCGT
CGTATCAAGGTCTGCAGCAGGACTGGCGAGAATGATGACCATCATCGTTG
AGGTGTTCGNNNNN
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Coding sequence (CDS) from alignment at Scaffold_68:210236..210949-

>EsuBft1944_4a-0001 ID=EsuBft1944_4a-0001|Name=EsuBft1944_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=531bp|location=Sequence derived from alignment at Scaffold_68:210236..210949- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAAT
ACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATGATTCGGTGG
ACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAG
CTGATCGAAGTCATTCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCG
CATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGC
GACAAGGATGTGTGCTATCCCCACTGCTGTTCAACATCTTCTTCGCCGAG
GTCCTCGAGGTCGTTGTTATCCGATTCAGCGAGGATGATGTTTTTCTGCG
GAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAAGCGGGGGGGGGAAAGG
AGACACCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGGACTTGTAT
GCCGATGATGCCGGCGTCGTATCAAGGTCTGCAGCAGGACTGGCGAGAAT
GATGACCATCATCGTTGAGGTGTTCGNNNNN
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