EsuBft1944_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1944_5a-0001
Unique Name	EsuBft1944_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:189334..200189 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LHJ2
ProteomeId	EsuBft1944_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	111
Hectar predicted targeting category	other localisation
Evalue	8.6e-05
EggNOG OGs	COG5409@1\|root,KOG1162@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	phosphate ion transport
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_5a	EsuBft1944_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 189334..200189 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_5a-0001-exon	EsuBft1944_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 189334..190350 -
EsuBft1944_5a-0001-exon	agat-exon-72339	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 200089..200189 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_5a-0001-exon	agat-three_prime_utr-7223	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 189334..190019 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_5a-0001-cds	EsuBft1944_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 190020..190350 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1944_5a-0001	EsuBft1944_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 190020..200189 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:189334..200189-
coding sequence from alignment at Scaffold_68:189334..200189-

spliced messenger RNA

>EsuBft1944_5a-0001 ID=EsuBft1944_5a-0001|Name=EsuBft1944_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1118bp|location=Sequence derived from alignment at Scaffold_68:189334..200189- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGAGGGGGATTTGTGCGAGTCCTGTGGACGACGATAATCTCGCC
GTTCGGAAAGGTCCGATTCTTTTCGGGCTACGCCGGCGTCATCCTCACCA
GGCTGTTCAAGAGGAGCTTTTTTGTGACGGTGAGGAACTCATTGACCTCG
ACGACCATGACCAAGAACGCCCGCGCCAGCTACATCGTCGGCACCACCTC
CATCGCCGCTGTCGAGAAGAAGAAATGGGGGCACCAGAACTGTTGGGGCT
ACCACATCGTCGCCCTCTCCAACGGCGTCACCATCATCGAACGCCTATCC
AAGACGCCCACCCCAGAAGCGATTGATCTCGCCTCTCGCCCTATCGCCGG
CGCCGGCGCCGGCGCCTCTTTCCAATGCCCCGGCACCAGCGAAAAACGGA
AGGTTCTCCTCAGGCGCGCGACGATAGCATAAAACCGCAAGGTCCGATCC
CCATCCCGTTCCCGCACCGACTCTTCTGGAGAGGAACCCGAAGAAACCAA
CGACGAGTACCCCGACGACGAACAGGACCCCGACTTTTCCCCCGGCGACG
ATAAAGACGACAACGAAGACAACAACGAAGACGGCAACGACACTGACGAT
GTCGACAACCGCGGCAACGACAACAACGACGATGCCGACTCCGATGATGC
CGACTCCGATGACGCCGCCTCCGACGACGGCTATGACACCGAATGGTGTC
TCCGTTTATCTGCCTTCCATTTTTTGCCCTGAAGTGTGCGTGTGGGATCG
CTGTTGCTTTCGCGTGTCTTCGGCTGTCTTTTCTTGAGTGCTTTTTGATT
GTGTCCATCTTGGGTGCTTTTCTCCGAATCTTCATGCCAAACAATCGTTG
AGCGTACTTTGGTACCACGTACCGTTGTAGCTTACCAACCGGCGGCCCAA
CGATCGATTGATTGTAGTTGTGCATCGTTTTCTCTACGGACCATTAATTT
TTTTTGCCCCCATTGGAGTTGTCGATCCACGGTATCGTCGACTATGTTTG
CCGATGAATCTGATTGAGCATTGTTGCCCCATATCATTGTGTTCGCTGGG
AATGTTCTTGTCTTTTCTACGTGCCTTCGCTAAGCAGCTTTTCAATATGT
TTTCGTTCTTCACGTTTG

protein sequence of EsuBft1944_5a-0001

>EsuBft1944_5 ID=EsuBft1944_5|Name=EsuBft1944_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=143bp
MSGGGFVRVLWTTIISPFGKVRFFSGYAGVILTRLFKRSFFVTVRNSLTS
TTMTKNARASYIVGTTSIAAVEKKKWGHQNCWGYHIVALSNGVTIIERLS
KTPTPEAIDLASRPIAGAGAGASFQCPGTSEKRKVLLRRATIA

mRNA from alignment at Scaffold_68:189334..200189-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1944_5a-0001 ID=EsuBft1944_5a-0001|Name=EsuBft1944_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=10856bp|location=Sequence derived from alignment at Scaffold_68:189334..200189- (Ectocarpus subulatus male Bft15b)
ATGAGCGGAGGGGGATTTGTGCGAGTCCTGTGGACGACGATAATCTCGCC
GTTCGGAAAGGTCCGATTCTTTTCGGGCTACGCCGGCGTCATCCTCACCA
GGTACGGCGGAAGTTAGTGTTGTCTGAAACGTCGATAGTATGGGGAAGTC
GATTTCACGCTATGTTGCGAAGAAGAATCGGAGACACTAGGTATGTCCAC
GACAACAATGACGAGTGCTTGCTAAAGGCGTACTAGATATTACACAAGGT
GTCCGTGCGGGACGTGGGTGTCAAGCCTCCCGCGGGTGACGCAAAACCAC
GTGTCATATTACGCTCGCATTTCGTGCAAGCTACAGCGCACGTACGTTGG
AGCCAGCTCGAGCGGACAGCAACTTGGCAGCGAACAAAAAATGTATATTT
GTACCGCAAATGAGCCTTGCGATGGCAGAATTCCAAGGAGAACCGAATTT
GTTGGAATCCGAAAAAACACCACAAACACAACATGTTCAACACTGCGCGT
GTGTGCGCTCAGACTTGTCTAAGGCAGCTGCGCTTTTCGCTGGGCCCGCT
GCGAAGTGCAGACGAGCAATGGTGCTGTTGACCATCGCGACGACACGCAG
AGACAGCGATGTAGAATCATCGAATGAATGAATGGACGTGGAGGTGAAGA
GCATTGGACATATTTTTTTTACACGCATATTTCTCGGTACTTCGGCTGCA
AGCTGCAAACTCCCGGGCGGCAACAGATGTTCAGCCCGATATTCCACAAC
TAGAGGCAATGGTACAAGCTTTGCAGAAGCACGACAAGTAGGGATCGTAT
GCGAAAAGTTATATGCTCTGTGATCAGGTTTTGCCGGCTGTCGATCAGTG
GTAGCGAGAGATGTGGTCGAATTGTATGCATGCGGGCCATTTTTCCCTAC
TATCGTTTAGATTGGTTCAAGTGTTGACCCACCAGGCGTTGTCGTCGCGG
AACACGTTCCCGGGGTATAGAGCCAGTTTTCGCGACTTTGACCGGCAAAC
ACACGCGTCACAGAGGCCTAGCGAGCTCCGGGTATGAACGATAAGGTGCC
GACGAGCCTCGTGCGTGCCCCTGAAAAAGAAGCCCGAGAAAAGACTGGCA
GCCGGCAGAAAAAAAAGAAATGCTAATGCACAAGAAATGACCAAATCTTG
TACATACGCACATACCATGTGTAGATTAGAGTCCCGAGCATGTTGTTTTT
TGATTGGAGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAG
TCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCC
GGGACGGAGCACGCCGGGTTCTCACCGGACCAGCCTCACATCACCAAGCG
CTAAGCTCCGTGAGATATTCGGCGAAACGCTTGAAGGGTGCGCTGCATCC
TTCTGAGGGTGTTCAGCATCTTGTGCTTACTTCCTTGCGCACGGATGACA
GCTGCGTACGACGGAATGCATTTCCTGGTGCTTTCACTTCCAGAGACGGT
TATAAGCACTGTGCAACTGCCTCGAGGGTGCTTGACCAAAGTAACACAAC
GTGGTGCAATCATCCCCCTTGCGCGGATTGAGGTCTCTTCACCTCGCACA
ACATAATCTACTCGACCACCATTGTGGTTACCGCCAAAAATATACCAGAG
GTTTAAAAAAAACCCGGTAACCTGGTTGCCGAGTTCACGAAGTGAATTGG
CTTGTTTTACAACGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNCTGTCATCTTCTTCAGCACTCTCCACATTTTCCCCT
TGATCCCGTATTTGGACAGTTGTTTCCACCACCCATTTCGCCATACGGTG
TCGTATGCCTGTTTCACGTGTAGGAAGAAGCAGTACGTCGGCTTTCCCGC
CCTCTTTCTACCTTGGATGATTCTCCCTACCGTGAACACGTGGTCTACGC
ACCCCCTCTTCTTGCGGAAACCTGCCTGGCCCTCACTAATGCTATGTTCC
TTCTCCAATACTCCCACTATCCTATCGTTCAGCAGCTTACAGAACACTTT
TCCTACTGTGTTCAACAGTGTGATCCCCCTGTAGTTTCCTGGGTCAGTCT
TGTCTCCTTTCTTAAACAAGTTCACAACCACTCCTTCCCTCCATCTACTT
GGCGTATACTCGTTTTTCCACACCCAATTGTATAGCAGTACCATCAGCTG
GATCATCCCCTTCCCCCCAAACTTCATGAACTCGTTGACTATCCCATCCG
CTCGTGCTGCCTTGTGCCACTTCAGCTTGTTCACACACGCCTCAACCTCG
TTCTCAGTGAAGTCCTTTTCTAGTTCTACGTTCCCAACGTCTGCCTTCGA
TGTCTCTTCTTCTTTTTGGGCCCATGCGTCCACCTCCTTCTTAAACACTT
GGTCAAAAGCTTCATTCTCCGAGGGCACTCCAAGTCTCTTGTAGTGTCCT
GCTAGAACTTCCCTTTTTCCCTTCCCACTGCTGACTAATCCACCGTTCAC
ACCTCGCAAAGTTGCTACCCATGTATCCCCCCCTTGCGCGGTCTTTTTTA
CCATTCCACTAATCCCTTCCCACATCTGCTTGACGTTTCCCTCCAGGCCT
CCGTTGGCCTTCTGCACTACTTCGTCCCAAATACACTTTTTCTTCTTTTT
CACTAGTCCCTTCACCTGTTTTCTCTTGGCCCTGTACTTTTCCCAACTCT
CCTCAGACGCCTCACTCAGGTACTGCTTGAAGACTTCTCCACGTTCCCCT
ATTTCTTCGTTCAGCTCGTCATCCCACCACTTAACCGATACCCCACATCG
TACCACCTTCTTTCTCACTACTCTCTCTGCCGAACGCAATATGGACTCCC
ACAATTCAATCACCGTCCCCTGCTGCTTGTACGTCCACCTGTCCGTCTTC
GACGCTTCTCAGCAGTTTCCTGAAGGNNNNNNNNNNNNNNNNNNNNNNNN
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CATGATCTACTCGACCACCATTATGGTTACCGCCAAAAAAAAAAACAGAG
GTAAAAAAAAACCGGTAACCTGTTTGCCGAGTTCACGAAGTGAATTGGCT
TGTTTTACAACGTTGTTGCCAAGCGACGAAAGCCCAACCCCGATGGCAAA
CACCGGGGGGGACAGGAGGTGATTGGGGGGGGGAGGTACAACATCCCGGG
CACAACATCTGGCGGTTGCTCCCGGTGGTCCTTGTTAACGTGGCCTTGGC
TCTCGTTGACAATGATGAGAATCATGGGTCTGTGTATACTACTGTAGCGA
CGTCATGAAAAGACAGGAACACGGCCGGACCTGGGGAACAACATCGTCCG
TGTTAGGGCGGGTTTAATCCACACCTGGTAAATGACAGTGTTTGTTTTTC
GGCGGTTTGGTTGGAGCGGAACCCAACCCTAGCGCTTATGCTGTCGACGT
GAGGGGTGCGATGCCAGGCGATGGCTCGTGCTCGGTCACAGGAACACCGG
ATACCGTCGCAGAACACAGCATTGCCGACCCTCAGGACAGGAAGAGCAGA
ACGAGTTGAAAATGGATCGTCGGTGTGCCCGTGAGTGTTGCCGTAGGCCC
TGAAAATCATGGAGTGTCTGCCGGAACATTCCTATCTACCGCTGATGTAA
GGGTCTTGCCTCCCGTAGGGCGCAGCGTTGTCGTGACTGCAGTGTTGCAG
AACGAGTGTTTTTTCACCCCCCCGCTGCAACCCCCCCCCTCGGTGGTGTT
TGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAG
CCGCCCCCCCCGGTGTTTGCCATCGGGANNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNTCGGCACAACAAGCGCCGGCGAACGTATACC
CGCTCATGGTGCATTTCTCGGCTTCCGGTCCGGTCGTTCGCATGAGGTGC
GGCTTGGGCACGCCGGAGTGCGATTCCACCCGCAATCCTTGTGCCGAGCT
CCCCATAGCTTGCAACAAGATCACGCCTCTTCTCCATTGCGATTACGACA
TGATCCCGAAACCATTCACCGCCATCCAACCGCACATGGCCGTCGATTGC
GGACCGCACACGAATGACGGGATACAATTGCCATCCGCTTTTTCCATCGG
AACGAAGTATGTTTTCTTTTGTGGCCCGCATTTTCGACGCCATAAGCTCG
TTTCCATTAACACTTATCTTGCTCCCTGTTCCACACGAGGTAACAGCTAA
ACATCGCCATGTACTTATACTCCCTCCATCGCGTCTGCTCTTTCACTCCT
TCCATATCCTTCGCCGCCCTTTTCCTACACAATGCGACGCGAGGTGTGCC
GAACGGGTATTTGCATCACATGTTTTGGCATTCATGGTGTGTATTTTCAA
CCGTACGTTCTGCCGCCTGTGCGATCATTCTGACTCACACACACCTGTAC
GATTTGCTTGACACGACCTGCTGGTCATTTTCGACCCTCTGCAACTTTCC
ATTCACTCACATCTCTCTTCCGCTTTGCCCTTTTCTCAGGCTGTTCAAGA
GGAGCTTTTTTGTGACGGTGAGGAACTCATTGACCTCGACGACCATGACC
AAGAACGCCCGCGCCAGCTACATCGTCGGCACCACCTCCATCGCCGCTGT
CGAGAAGAAGAAATGGGGGCACCAGAACTGTTGGGGCTACCACATCGTCG
CCCTCTCCAACGGCGTCACCATCATCGAACGCCTATCCAAGACGCCCACC
CCAGAAGCGATTGATCTCGCCTCTCGCCCTATCGCCGGCGCCGGCGCCGG
CGCCTCTTTCCAATGCCCCGGCACCAGCGAAAAACGGAAGGTTCTCCTCA
GGCGCGCGACGATAGCATAAAACCGCAAGGTCCGATCCCCATCCCGTTCC
CGCACCGACTCTTCTGGAGAGGAACCCGAAGAAACCAACGACGAGTACCC
CGACGACGAACAGGACCCCGACTTTTCCCCCGGCGACGATAAAGACGACA
ACGAAGACAACAACGAAGACGGCAACGACACTGACGATGTCGACAACCGC
GGCAACGACAACAACGACGATGCCGACTCCGATGATGCCGACTCCGATGA
CGCCGCCTCCGACGACGGCTATGACACCGAATGGTGTCTCCGTTTATCTG
CCTTCCATTTTTTGCCCTGAAGTGTGCGTGTGGGATCGCTGTTGCTTTCG
CGTGTCTTCGGCTGTCTTTTCTTGAGTGCTTTTTGATTGTGTCCATCTTG
GGTGCTTTTCTCCGAATCTTCATGCCAAACAATCGTTGAGCGTACTTTGG
TACCACGTACCGTTGTAGCTTACCAACCGGCGGCCCAACGATCGATTGAT
TGTAGTTGTGCATCGTTTTCTCTACGGACCATTAATTTTTTTTGCCCCCA
TTGGAGTTGTCGATCCACGGTATCGTCGACTATGTTTGCCGATGAATCTG
ATTGAGCATTGTTGCCCCATATCATTGTGTTCGCTGGGAATGTTCTTGTC
TTTTCTACGTGCCTTCGCTAAGCAGCTTTTCAATATGTTTTCGTTCTTCA
CGTTTG

Coding sequence (CDS) from alignment at Scaffold_68:189334..200189-

>EsuBft1944_5a-0001 ID=EsuBft1944_5a-0001|Name=EsuBft1944_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=432bp|location=Sequence derived from alignment at Scaffold_68:189334..200189- (Ectocarpus subulatus male Bft15b)
ATGAGCGGAGGGGGATTTGTGCGAGTCCTGTGGACGACGATAATCTCGCC
GTTCGGAAAGGTCCGATTCTTTTCGGGCTACGCCGGCGTCATCCTCACCA
GGCTGTTCAAGAGGAGCTTTTTTGTGACGGTGAGGAACTCATTGACCTCG
ACGACCATGACCAAGAACGCCCGCGCCAGCTACATCGTCGGCACCACCTC
CATCGCCGCTGTCGAGAAGAAGAAATGGGGGCACCAGAACTGTTGGGGCT
ACCACATCGTCGCCCTCTCCAACGGCGTCACCATCATCGAACGCCTATCC
AAGACGCCCACCCCAGAAGCGATTGATCTCGCCTCTCGCCCTATCGCCGG
CGCCGGCGCCGGCGCCTCTTTCCAATGCCCCGGCACCAGCGAAAAACGGA
AGGTTCTCCTCAGGCGCGCGACGATAGCATAA