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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 2880.D8LF46 |
| ProteomeId | EsuBft1944_7 |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 92 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 9.85e-42 |
| EggNOG OGs | 2CYK8@1|root,2S4YE@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG rclass | RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 |
| KEGG ko | ko:K01188 |
| KEGG Reaction | R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 |
| KEGG Pathway | ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 |
| GOs | GO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772 |
| EC | 3.2.1.21 |
| CAZy | GH1 |
| BRITE | ko00000,ko00001,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1944_7a-0001 ID=EsuBft1944_7a-0001|Name=EsuBft1944_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=927bp|location=Sequence derived from alignment at Scaffold_68:173777..175922+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGTATGTGCATTTGCCGACTTACCTTCCCGTCGCGGTAGTCGGTGA
TGTGATCTTGCTTTTGACCTACCTGCTTTCTGTCTCCCGAAGATGTCCAC
GACCTCGCCCTTCGACATCACTCCTATATTTGCTGAACCCATTCACTCTG
GTCCGGCTCTGTTTGGCCGTCTACCTCTGTTTGGCACTCTCGGTTCGCTT
GGCAGCTCTCTGGGACCACACCCAACAGGTTCAAGATGTCGACCACAATG
AGGGAAGTGACAGCATGCCAGGTGGAGCAATGCCCAGCCAGCTGCGCCGG
TTGCTTGACGTCCTCGACAGCAGTGTCGGATCGCATGCCCGTAGGCTCGG
TGGTAACCCATGGACTGAACCACCAGAGTCGATCGTGGTCAAAGGTCTGA
AGAATATCAGAGGGTATTTCGAAGACCTGTATGCGGAGCCCTGCCGGATC
AAGCGCAGCAGCGTCAAGGTTGTCCTTGTCGGTCAGGAAGGCGCAGGGAA
AACGAGGTCAGCTATGCGATGGCCCTGCTGTTATCCGTCATCCACTGCTG
CACTCTCACCAAACATTGGTTGGTCGGAATCGTTCGATACAACGCAGTTG
ACACAGTGTGGTATTATTTCAAGCTCGATCAACCATACTACACTCAGTTG
TCGCTTTTCCCCAGAGAATCGTTTGTTTTCTGGAGAGCGGTAGCCACACG
TGCCGTTTCACGCCTGAACCTTCCATGCGCGACTCCGATTGTACTTGGTC
TTGTACCTAGAGTGAGTGAGTGATCGCACCACCTCTAGACCGCGACTCTA
GCAACTCGACCGCTTCAAAGCCGAAAACCTGATGAGAGATGGAAGAACGT
TGTCGACAATATCGTCCAAACCTCTCGTTTAGGGACTGGTGCTCTCTTAG
TTGTGGAGTACTTGAGTTTTGAAAGTC back to topprotein sequence of EsuBft1944_7a-0001 >EsuBft1944_7 ID=EsuBft1944_7|Name=EsuBft1944_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=230bp
MVYVHLPTYLPVAVVGDVILLLTYLLSVSRRCPRPRPSTSLLYLLNPFTL
VRLCLAVYLCLALSVRLAALWDHTQQVQDVDHNEGSDSMPGGAMPSQLRR
LLDVLDSSVGSHARRLGGNPWTEPPESIVVKGLKNIRGYFEDLYAEPCRI
KRSSVKVVLVGQEGAGKTRSAMRWPCCYPSSTAALSPNIGWSESFDTTQL
TQCGIISSSINHTTLSCRFSPENRLFSGER back to topmRNA from alignment at Scaffold_68:173777..175922+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1944_7a-0001 ID=EsuBft1944_7a-0001|Name=EsuBft1944_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2146bp|location=Sequence derived from alignment at Scaffold_68:173777..175922+ (Ectocarpus subulatus male Bft15b)
ATGGTGTATGTGCATTTGCCGACTTACCTGTAAGTTTGTTGTTGCCTTCA
GGTCGGTGGGGCCCCCCAGCTCGTTTGGTATCAGGCCTGTCTGAAGAGGC
ACAGCGGAAGACCGAAAGTGACAACAATCGTCAATCAGTCCAGCCGATTT
GAATCAGTCGATCCATCCCGTGAACTGATTTTAGCCGAAGAAACTTCACA
GCTTGTTCAAGCCTGTCAGGTGCTCGGAAATTGCGCCTATAGAATGAGAC
AGCACGCAACAAGGGCCATCGCATTTCGGATGCCGAGTGAGCGTTTCCCT
GAGTGGTCGCGCCTTATTTCGGAATGCGTGCAAGCTTGCTGCTTTCCATT
TGTTTTGCATCGAAGGGACCAAAACGGTCTCTGGAGGGTTCGGCAAATGA
CGAGATCTGCCTCACCGATTTCAGCTGAATGAATGAGTTGTTGATGTGCC
TCACCACATTCAATCGTCCAGGAATAGACGAACTCAAAATTCGACGAGGA
GCAGAAACGGGTGCCCCCACACGATTTGGTATGAACTGCCCATGCTGGAG
CTTTGATCAACGGCCGTGTCATTCTTCGTTTTGATACAGGAATAGCCAAG
ACGGTACTCACAAAATTCTCGGTGGGCTTTGAGGCCACAGTCCCGTCGCG
GTAGTCGGTGATGTGATCTTGCTTTTGACCTACCTGCTTTCTGTCTCCCG
AAGATGTCCACGACCTCGCCCTTCGACATCACTCCTATATTTGCTGAACC
CATTCACTCTGGTCCGGCTCTGTTTGGCCGTCTACCTCTGTTTGGCACTC
TCGGTTCGCTTGGCAGCTCTCTGGGACCACACCCAACAGGTTCAAGATGT
CGACCACAATGAGGGAAGTGACAGCATGCCAGGTATGCTTACATTTAGCA
TGGTGCCCAAAGTAATACCTTCGAGACAGTCAATTGTCTGCCTGCGAGTG
GACCCAGCGGTAATCGACGTAAATTGGAAAACCTCAGTGGCGAACGGACG
TACGTGATGCTGGTTGTCCTCGATGCCAGCAGCAGTTCCATATTGCACTA
AAATTCTCAGCTTGTTGGAGCTCCTATGGGAAGTGTACCATGTGAGGAAT
GAATGTTGGAGTTGAAGGGCAGGCTCAGTCTTTTGGGCAAAGGTGGAACC
CTTGAGGGGCTAATACATCGCCCCACATCTCGTAGCATACCTTTCACACA
CCACGACGTAGGAAGTTCGTTGGTGGTACCTACGGCCTTGTGTGTGGACG
ATGGACTGCTGCGTTATCCAGCCTGTTGTAGCTTTACTGCTGCCTCGTGC
GGTAACGTCTCAATGTGGTCACCCATCGTGCATCAACCACAAGGAAAAAC
TGAATAGTTTACGCGGGGACTACGAACATTGCCAGAGGCAGCTTACTGCT
GGAGTCACTACCCTCTGGCCTCGTGATCACAAGTGGCGCGGGCGATGATA
ATCATCCCATCATGTGCGCGTGCTTTACGTTGCTCGTCAGGTGGAGCAAT
GCCCAGCCAGCTGCGCCGGTTGCTTGACGTCCTCGACAGCAGTGTCGGAT
CGCATGCCCGTAGGCTCGGTGGTAACCCATGGACTGAACCACCAGAGTCG
ATCGTGGTCAAAGGTCTGAAGAATATCAGAGGGTATTTCGAAGACCTGTA
TGCGGAGCCCTGCCGGATCAAGCGCAGCAGCGTCAAGGTTGTCCTTGTCG
GTCAGGAAGGCGCAGGGAAAACGAGGTCAGCTATGCGATGGCCCTGCTGT
TATCCGTCATCCACTGCTGCACTCTCACCAAACATTGGTTGGTCGGAATC
GTTCGATACAACGCAGTTGACACAGTGTGGTATTATTTCAAGCTCGATCA
ACCATACTACACTCAGTTGTCGCTTTTCCCCAGAGAATCGTTTGTTTTCT
GGAGAGCGGTAGCCACACGTGCCGTTTCACGCCTGAACCTTCCATGCGCG
ACTCCGATTGTACTTGGTCTTGTACCTAGAGTGAGTGAGTGATCGCACCA
CCTCTAGACCGCGACTCTAGCAACTCGACCGCTTCAAAGCCGAAAACCTG
ATGAGAGATGGAAGAACGTTGTCGACAATATCGTCCAAACCTCTCGTTTA
GGGACTGGTGCTCTCTTAGTTGTGGAGTACTTGAGTTTTGAAAGTC back to topCoding sequence (CDS) from alignment at Scaffold_68:173777..175922+ >EsuBft1944_7a-0001 ID=EsuBft1944_7a-0001|Name=EsuBft1944_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=693bp|location=Sequence derived from alignment at Scaffold_68:173777..175922+ (Ectocarpus subulatus male Bft15b)
ATGGTGTATGTGCATTTGCCGACTTACCTTCCCGTCGCGGTAGTCGGTGA
TGTGATCTTGCTTTTGACCTACCTGCTTTCTGTCTCCCGAAGATGTCCAC
GACCTCGCCCTTCGACATCACTCCTATATTTGCTGAACCCATTCACTCTG
GTCCGGCTCTGTTTGGCCGTCTACCTCTGTTTGGCACTCTCGGTTCGCTT
GGCAGCTCTCTGGGACCACACCCAACAGGTTCAAGATGTCGACCACAATG
AGGGAAGTGACAGCATGCCAGGTGGAGCAATGCCCAGCCAGCTGCGCCGG
TTGCTTGACGTCCTCGACAGCAGTGTCGGATCGCATGCCCGTAGGCTCGG
TGGTAACCCATGGACTGAACCACCAGAGTCGATCGTGGTCAAAGGTCTGA
AGAATATCAGAGGGTATTTCGAAGACCTGTATGCGGAGCCCTGCCGGATC
AAGCGCAGCAGCGTCAAGGTTGTCCTTGTCGGTCAGGAAGGCGCAGGGAA
AACGAGGTCAGCTATGCGATGGCCCTGCTGTTATCCGTCATCCACTGCTG
CACTCTCACCAAACATTGGTTGGTCGGAATCGTTCGATACAACGCAGTTG
ACACAGTGTGGTATTATTTCAAGCTCGATCAACCATACTACACTCAGTTG
TCGCTTTTCCCCAGAGAATCGTTTGTTTTCTGGAGAGCGGTAG back to top
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