EsuBft1178_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1178_3a-0001
Unique NameEsuBft1178_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:144884..148490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FP33
ProteomeIdEsuBft1178_3
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length94
Hectar predicted targeting categorysignal anchor
Evalue1.3e-06
EggNOG OGsCOG5021@1|root,KOG0940@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_000080.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionubiquitin protein ligase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_3aEsuBft1178_3aEctocarpus subulatus male Bft15bgeneScaffold_68 144884..148490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_3a-0001EsuBft1178_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 146157..148490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_3a-0001-exonagat-exon-31289Ectocarpus subulatus male Bft15bexonScaffold_68 144884..144916 -
EsuBft1178_3a-0001-exonagat-exon-31290Ectocarpus subulatus male Bft15bexonScaffold_68 145700..146423 -
EsuBft1178_3a-0001-exonEsuBft1178_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 147212..147279 -
EsuBft1178_3a-0001-exonagat-exon-31291Ectocarpus subulatus male Bft15bexonScaffold_68 148376..148490 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_3a-0001-exonagat-three_prime_utr-1702Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 144884..144916 -
EsuBft1178_3a-0001-exonagat-three_prime_utr-1703Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 145700..146156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_3a-0001-cdsEsuBft1178_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 146157..146423 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1178_3a-0001 ID=EsuBft1178_3a-0001|Name=EsuBft1178_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=940bp|location=Sequence derived from alignment at Scaffold_68:144884..148490- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACACGCCTCCTACATTTTTTTTGTCTACAGGAAACCGGACGAGGT
AGTTCCAAATCACAGGCGGCGGGCTCGTGTGCTGTGGGCGATCATGATGG
TGGGAGTTATCACATATATCGGTTTGCTCGTGAAGAACACGGTGGAGAGA
ATGAAGTCTCCAAACACCTCTGTCGAGCTGTCGAACGTGGTGTACACGTA
CCCGGACCTCTGGGTGTGCCCATACAACCAGTATGGCTGCGATGATATCA
CCCTCGAGCTGGGATGTGTGACGTCGTCGTGGAGAACCGAGGCAGGCCCA
CCCAGCGCAATTTTCTATAACAGCGAGGGGACCGACCAACAAACGACAGA
CCCACTGGAGATCGAGGCTACCTGGGTCGACACGAGTGCCATAGAGGGGA
TCGCAAAAGCAAGAGAAGCATGGTCACGAATACGCTTGAGTTTGCTGTAG
TTTCGAAAGTCGAAAGCGTATTCGTGCATGGGTTGGAAAGGCCCAGCCAT
CTATGGGGTTTGAGTATAGAGGGTTTGGGGCTGACACACTTGAGGACATA
GCGGACGTGTCTTGTGGCCAACATTGGGCGTCGTCCGAACCTTCGAGCCC
AACCAACCATGGAGTATCCCGTGTGTATATCCCGGTCTCTATGTTCTGTT
GTTTGTGTGCGCTGTCTTTGGCAACATGAAGGCCCGTGCATGTCGATATG
CGATTGAAGCCATGAACCTGCTCGTTAGGTCCTCATAGTATGGCCCCTGA
AACACCTATAACACCCATTGTTTAGTCTATTGTCGTGCTTGGCGTCGCTA
TCCTTCAGGGGAGAGGACTCTGTGTGGAGTTCAACACATCGGCTGCGACC
GCTTTTGTTGGACAAGAGAGGGACCCCGACGAGTACTTGGACTACATCCT
CTTGGACATGTATTGGTACCCCAGCGGTAATGAGACGACG
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protein sequence of EsuBft1178_3a-0001

>EsuBft1178_3 ID=EsuBft1178_3|Name=EsuBft1178_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=149bp
MQHASYIFFVYRKPDEVVPNHRRRARVLWAIMMVGVITYIGLLVKNTVER
MKSPNTSVELSNVVYTYPDLWVCPYNQYGCDDITLELGCVTSSWRTEAGP
PSAIFYNSEGTDQQTTDPLEIEATWVDTSAIEGIAKAREAWSRIRLSLL
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mRNA from alignment at Scaffold_68:144884..148490-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1178_3a-0001 ID=EsuBft1178_3a-0001|Name=EsuBft1178_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3607bp|location=Sequence derived from alignment at Scaffold_68:144884..148490- (Ectocarpus subulatus male Bft15b)
ATGCAACACGCCTCCTACATTTTTTTTGTCTACAGGAAACCGGACGAGGT
AGTTCCAAATCACAGGCGGCGGGCTCGTGTGCTGTGGGCGATCATGATGG
TGGGAGTTATCACATGTGAGCGCGCCTATCAAGAACGCTGAGCTATCCTG
CGAACGCTGTACACGAAATCAGCAAGACGGTATAGTAGACCTATTTCCCG
CCCTGTTCCTCTCTCCTTCTCCCTTTATTTGAAACGTTTCATAAACGGTT
AGTCTATTTATAAATTAACTGGTGTAGGGTTCGCTGCGCCGAACATTTTG
ATTCACGTGTCGCCTCTCAAGCAACGTGAATCGTCAGCGCCGGCGCGGTC
CTGCCGCAACCCAGTCTACAAACGGTAGACAGACGTAGAGTCTACAGTGG
TTTTGTGGAATCGAATACCAGTTTTTCTTGTTAAGTGTTTTTTACCCCAA
CAATTGAACTTTTTTGCCGCAAATGCATCCATACGTAGACAACATTGTGT
TACGCCCGCCTCCACCTGACGTCTCTCGGCGACAGTTTCAAGATCTAGCT
GGGCACACGGAAGAATATACGTGCAATGCTCACAATAGACAACATGTAGT
TGTTCCTGTCTTCGCGACGTCTCGATGGCAGTTACTAATGTGAGGATCTA
GCTTGGCACAAGGCGGGGTTTCTGGTTATTATCTGTCAAACCTTCATGCA
GTTCTCAGCAATACACATTGTTCCCGCCGCGGTGACGGTGGCTCTCTTAC
GACGTAAACACACATCATCCGGTAGGTATCCATGTTAGTACCAAAGCTTC
TGCGACCAATCGTCGGTCCTCGCGTGGAGATATGCAGTCTTTCGGTGACC
GCATGCTACGGGCTGTCGGCCCTTGCACGCTGAACGCATTGACGCGGCTC
GAACCGTATTGCTTCACCGTAGAGGGTCCTGTAGCGGCAGCATGCGTTCG
TCAAAGTTGCAGGTGTCACGGCCTTGTGTGCGCTGTATTCAGTCTACTTC
GTTGCGGTTCTGCTCGAGCAATAGTAGCAACGTTTGTGCGGACGACAAGC
CACGCTTTCATCGTTCGATACTCAGATTCGCCCCGGCCATCCCTGTTCGC
AAATCGGGAGCACTTTGTCCTATGTATCAGCGGATGGATAGGCTGTCTGA
GGCCCACAGGCTTCTGTGGCCCACAAACAACCCTCTTACCTGCTTGCGTG
TGTCTTCGCAGATATCGGTTTGCTCGTGAAGAACACGGTGGAGAGAATGA
AGTCTCCAAACACCTCTGTCGAGCTGTCGGTGAGATATACTGAGTTGCTG
ACCACATCCGTCATCGCCTACATCGATCCCCAGCATTCTTTGTTCCGTGG
CATGCCGGTTCAACTCAACGGTATGCGGGGGCTCCTCTCTGCCTCATGCG
TTACGTATTTGTAGACGACTGCCCGACAGTCCGCGGAGATGTGCTTAGAT
CGTGTCGCACTAACGCAGAACAAGGACAACGGCGAAAAGGGAGAAACGAT
GGAGAGTCAGTTCGACGACTTGAGCACCCACACCACTCCAGATGTAGAGC
CCCCACTCACGGCACTTCTGATACCACCGCTCGGACCGACACATACATGC
CAATTCGATTGGTTACGAGACCTACCAACAATCCGGACGGCGATACTGTT
TGGTTCACCTCGTCCAAGATCTTCCGGCGAACACAACGCTGGAATTGCCC
TCCTGGAATGTGCCGCGGGAACAATATCCGAGGGTGCGGATATTTTACCG
CCGGCTCACAGCAGTTGTGAATACCGTTCGAAGGAGGGGCACCGCAGACA
GTACTGGGAGACACAATCTGCTCACGTGTTCCGGCGTGTGTCATCAGCGA
CCGTGTGCTAATATGCGCAAGTGGGTCGTCAGACACCACGTGCTACAATG
TACAAGTACTCGTCAGAAAATCAACCGGGGCTCTACGGACGGCTGTATGT
CGTCCATCAAATCGACAGTGCACTACTCGCGCACCATCTCGCGAACTGGT
GAACCGCGGCATTTTTTTACCTGTTTCCCTTGTCGCTGTTTCCTCAACAC
GTCCCGCCGCCGTACAGAACGTGGTGTACACGTACCCGGACCTCTGGGTG
TGCCCATACAACCAGTATGGCTGCGATGATATCACCCTCGAGCTGGGATG
TGTGACGTCGTCGTGGAGAACCGAGGCAGGCCCACCCAGCGCAATTTTCT
ATAACAGCGAGGGGACCGACCAACAAACGACAGACCCACTGGAGATCGAG
GCTACCTGGGTCGACACGAGTGCCATAGAGGGGATCGCAAAAGCAAGAGA
AGCATGGTCACGAATACGCTTGAGTTTGCTGTAGTTTCGAAAGTCGAAAG
CGTATTCGTGCATGGGTTGGAAAGGCCCAGCCATCTATGGGGTTTGAGTA
TAGAGGGTTTGGGGCTGACACACTTGAGGACATAGCGGACGTGTCTTGTG
GCCAACATTGGGCGTCGTCCGAACCTTCGAGCCCAACCAACCATGGAGTA
TCCCGTGTGTATATCCCGGTCTCTATGTTCTGTTGTTTGTGTGCGCTGTC
TTTGGCAACATGAAGGCCCGTGCATGTCGATATGCGATTGAAGCCATGAA
CCTGCTCGTTAGGTCCTCATAGTATGGCCCCTGAAACACCTATAACACCC
ATTGTTTAGTCTATTGTCGTGCTTGGCGTCGCTATCCTTCAGGGGAGAGG
ACTCTGTGTGGAGTTCAACACATCGGCTGCGACCGCTTTTGTTGGACAAG
AGAGGGACCCCGACGAGTACTTGGACTACATCCTCTTGGACGTGAGGCGT
TGCTATTATGTCTCGTAGTCCCCGGATAACAAAACTATTGAATCCCCTCC
GTACGAAACGTTCGAACGTTTTTCACACGACGGCCCCATTTGCGTAGTTT
GGCGTGAGTGAGTAGGTCGTTTGCGATATCCTAGGACGGGCATATTGCGT
CCTGCGCAGATAGTGAGTGGGAGATGTTGCCCGCCACGCCCAGATCAAAT
GGTGTTATCATTGCAGCGGTGACCCCGGAGAAACTGTGGCTATGAACTAA
CCATTGTAGAACCCATACCAGGTTCCCGTCCTTTTCCCAAGCTGCTCTTA
CGCGAAGACACTGACAGTCCGGTCAACACGAGCTACTGTCCTCGATTCCA
TAGTGTTTCGGCTTTCCTGTAGGATTGGGTGATCAGGTCTGGATTTCGTC
CGCGTCGTTCAGCAACACGCGGGCTGGGGTGGAAACCACAAACATAGCGT
TGAACACCCGGACTGTTGTTCAGCTCTAGGGATCAATAGGTCACCTGCAA
GGCCGCAGGAGCCAACGACATCGACGTGACGCTGCCGTAGCTCCACAAGA
CCGGTCTTGTGCTAAGCCCGACGCGGACAAGCGAGGGGTCTTTTGATCGA
CCTGCTGTGGATGCGTCAAGACGTCCAGCCTCCAGTCCCATCACTGCTGC
GTGCCACGGATGTGGAAGGTATCTCGGGCCTCGTCGATATCATCCCTTCT
GTTAACAGACACTCTGGCATTGCTGCGGTCGAATTACCCAACAAACACGT
ACGCCCTTTGCCTGATTTGAGCAGATGTATTGGTACCCCAGCGGTAATGA
GACGACG
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Coding sequence (CDS) from alignment at Scaffold_68:144884..148490-

>EsuBft1178_3a-0001 ID=EsuBft1178_3a-0001|Name=EsuBft1178_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=450bp|location=Sequence derived from alignment at Scaffold_68:144884..148490- (Ectocarpus subulatus male Bft15b)
ATGCAACACGCCTCCTACATTTTTTTTGTCTACAGGAAACCGGACGAGGT
AGTTCCAAATCACAGGCGGCGGGCTCGTGTGCTGTGGGCGATCATGATGG
TGGGAGTTATCACATATATCGGTTTGCTCGTGAAGAACACGGTGGAGAGA
ATGAAGTCTCCAAACACCTCTGTCGAGCTGTCGAACGTGGTGTACACGTA
CCCGGACCTCTGGGTGTGCCCATACAACCAGTATGGCTGCGATGATATCA
CCCTCGAGCTGGGATGTGTGACGTCGTCGTGGAGAACCGAGGCAGGCCCA
CCCAGCGCAATTTTCTATAACAGCGAGGGGACCGACCAACAAACGACAGA
CCCACTGGAGATCGAGGCTACCTGGGTCGACACGAGTGCCATAGAGGGGA
TCGCAAAAGCAAGAGAAGCATGGTCACGAATACGCTTGAGTTTGCTGTAG
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