EsuBft1178_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1178_4a-0001
Unique NameEsuBft1178_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:142195..144882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FP33
ProteomeIdEsuBft1178_4
Protein domainsPS51257
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length130
Hectar predicted targeting categoryother localisation
Evalue7.6e-05
EggNOG OGsCOG5021@1|root,KOG0940@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionubiquitin protein ligase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_4aEsuBft1178_4aEctocarpus subulatus male Bft15bgeneScaffold_68 142195..144882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_4a-0001EsuBft1178_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 142793..144861 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_4a-0001-exonagat-exon-31294Ectocarpus subulatus male Bft15bexonScaffold_68 142195..142849 -
EsuBft1178_4a-0001-exonagat-exon-31293Ectocarpus subulatus male Bft15bexonScaffold_68 143417..143676 -
EsuBft1178_4a-0001-exonagat-exon-31295Ectocarpus subulatus male Bft15bexonScaffold_68 143875..144010 -
EsuBft1178_4a-0001-exonagat-exon-31292Ectocarpus subulatus male Bft15bexonScaffold_68 144187..144279 -
EsuBft1178_4a-0001-exonEsuBft1178_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 144524..144639 -
EsuBft1178_4a-0001-exonagat-exon-31296Ectocarpus subulatus male Bft15bexonScaffold_68 144837..144882 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_4a-0001-exonagat-three_prime_utr-1704Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 142195..142792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_4a-0001-cdsEsuBft1178_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 142793..142849 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_4a-0001-exonagat-five_prime_utr-1126Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 144862..144882 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1178_4a-0001 ID=EsuBft1178_4a-0001|Name=EsuBft1178_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1306bp|location=Sequence derived from alignment at Scaffold_68:142195..144882- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGTCTACGACGTGCGTGGAAGATGGAGAAGAGTGGGAGCCTCACAGAGTG
GGTGTACGCGTTCCTGACCGATCCAGAGGACCTTACCATGGTGTCGACGG
CAATACAGTTGTCCTACAGCTGCATTACAAGTACATCCACCAGCCACGTC
TTCAACTCGGTGGGAATCGGCCTCACCAACCAGATTAAATATACCGGGGA
CATCATTTCTTCGTACAAGGCTGTATCGATAAACTCCGGGGTGTACAAGG
ATCAGGCGGACGGTGACATCACCAAGCCATACGCCCGTTTGTCGATGGAG
CTCAAGCAACAGTTTGACTCATGGGAGATCATCACAGAAGCGGACCCATT
CGAATTCGCCGAGATTCTTGGTAACATCGGAGGGTTTTGGGATCTGATCC
TGATTTTATGGCCTTTGTTCTTTGTGGCGGCCAGCCAGCCAGAACCAAAT
CTCAAGCCTCGCAACTTTGCGAAATCGTTCACCAGGACAGTAGAGCGCTT
CTCGGGCATGACGAAAACAGTCGCCAACTCGGGGCCTATGAGGCGTATCG
AATCTATCGAGATGAGAAACGGAACGAGCGGTGCATCCCTGGAAGACGGC
CTCCAAGAAGAGCCGGTGCCGTGGGAACATCCACCCGCATTAGGGGTACA
GAGGAGCCTTTCAAGAAGAGTACCTAATAGCTTCCGGGTGATGCAGCCCG
ATGCTTGACCCGTTTGGGACATCCATCCCCAAAGTTGGTCGGAAAATGTG
TGTGTTGTAGTCTAAACCAATGGGTGCTTTTGCATGGCGCTCCATTTTAT
GTTTGGAATGAACCAATACATGCATGATTAGGGATGATCTTTCCAGTATT
TATATTTCAATCGGTGAGGATGGCGTGTTGTCGTGATTTTTGAGCCTTTG
GAGTAAGATACCATCTGGGTGGGCATGTCTTGTACATAATCACCTGCCGA
GCTGTGTTCCGTATTGATGCAAGCAGCGGGCCATTCGCTGTTTGGTAGCA
GCAAGCACGTTTGTATTTAATTCTTCAGTGTTGCCTGGGATCGAGGGATG
GCCAGTGATTACCAAGGGATGGGATAGGAAAGGAAATTAGACTGAAACAG
AGCCACAACTCTACACACAATGGTCGGATTCCCTCCACAGTGAAAGATCG
AGTCACATTTGGCCCCGGCTTGGGATCCACGTGCGCAAGGGCTTTCTGGT
TTTGGTCTGATTGAGATTTTTTCTGGGTGTTGGGCGTCTGTCTTCCTTTT
GTGCGCTTCCCTCGCTCTTCAAAGGCAAAATGAAACCATCAGACTAAATA
GTCCTG
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protein sequence of EsuBft1178_4a-0001

>EsuBft1178_4 ID=EsuBft1178_4|Name=EsuBft1178_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=228bp
MEKSGSLTEWVYAFLTDPEDLTMVSTAIQLSYSCITSTSTSHVFNSVGIG
LTNQIKYTGDIISSYKAVSINSGVYKDQADGDITKPYARLSMELKQQFDS
WEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFA
KSFTRTVERFSGMTKTVANSGPMRRIESIEMRNGTSGASLEDGLQEEPVP
WEHPPALGVQRSLSRRVPNSFRVMQPDA
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mRNA from alignment at Scaffold_68:142195..144882-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1178_4a-0001 ID=EsuBft1178_4a-0001|Name=EsuBft1178_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2688bp|location=Sequence derived from alignment at Scaffold_68:142195..144882- (Ectocarpus subulatus male Bft15b)
AGTCTACGACGTGCGTGGAAGATGGAGAAGAGTGGGAGCCTCACAGGTGA
ACAAACCCAAACCGTCTACACAGGATAATGAGACGGCAAAAATCGGAGAA
TGCCATGCATATGACATGAGACCCCCCAACATTCAGGCGAGTGACGTACG
TCTTTTGGGCATGGCGGAGATCGTCCACAAGACGGTAGACGTTACTTTTC
TTCCCAACGACTCGTCGCTGTATTCCTCCCGGACCTCGCAGAGAGTGGGT
GTACGCGTTCCTGACCGATCCAGAGGACCTTACCATGGTGTCGACGGCAA
TACAGTTGTCCTACAGCTGCATTACAAGTACATCCACCAGCCACGTCTTC
AACTCGGTGGTGAGCTAACCCCCACACGGTGGACTTTGGAACCTTCAGCT
AGAGAGGCGAGTGTGCCGACAGCCGCTCTGTGCACCTAACATGCTGGTGA
GGATGCTTACACCATATTCGTTTCATCACTGGAAGGCGGCTAGTCGTTTT
TGCTATTGTGTGTGTTTTGTGTAGTGTTGTAGCATGCCTTTTCATGGAAC
TCCTCTCACAGCGCTGAACGTGGGTGCGCGCCTCGCGTGGTTTTCTGATC
CAGGGAATCGGCCTCACCAACCAGATTAAATATACCGGGGACATCATTTC
TTCGTACAAGGCTGTATCGATAAACTCCGGGGTGTACAAGGATCAGGTGA
GATGGGCAACTCAAAAGACTGGTCGTTACGTGTTCGTGGAAGCTATCAAC
GCTTCCCGCGTTACACGCCACAAGACCGTGACGGAGAACTACCGGAGCCT
CGCTGCTTGTCGTCCCCTTGAAAGAAGATCTTCGCGTGTCTCTATCTGTC
ACTCGTACTTCCCCTTCTCCAGGCGGACGGTGACATCACCAAGCCATACG
CCCGTTTGTCGATGGAGCTCAAGCAACAGTTTGACTCATGGGAGATCATC
ACAGAAGCGGACCCATTCGAATTCGCCGAGATTCTTGGTAACATCGGAGG
GTTTTGGGGTAAGCGAACACGCAAGCAAGCCAAAGACCAAAGCTCGCGGG
GAACGCGCAGGGTCTGCATCAGGCAGACCTGCCGTGTTTGGCACCAGCTA
TGCGTTCTCTGCCATCAAATACCCTCTGCTGGTAACCCTGCACGCGATTT
AATCTTGCTCGGTTCTCTTCGCTATTGTTGTGTTCTCCTCGCCCGTTCCT
TTGCAGATCTGATCCTGATTTTATGGCCTTTGTTCTTTGTGGCGGCCAGC
CAGCCAGAACCAAATCTCAAGCCTCGCAACTTTGCGAAATCGTTCACCAG
GACAGTAGAGCGCTTCTCGGGCATGACGAAAACAGTCGCCAACTCGGGGC
CTATGAGGCGTATCGAATCTATCGAGATGAGAAACGGAACGAGCGGTGCA
TCCCTGGAAGACGGCCTCCAAGAAGAGCCGGTGCCGTGGGAACATCCACC
CGCATTAGGGGTACAGGTGCGCGTAACGTCCCCTTGGGTTCGTTGCCACT
GCATGAAATGCTTCCCGGGAGACGAGGTTCGCCATGGTTTAGCGCACTGT
GCATCATAGTGGTCGTTTAGCGAGGGAGGCCGTACCCTTCGATTCCTTGT
CACATTTTGGGCGCGCCGAACATTCCAATGACCAGAGACGATGCTTGTCG
ATCTTTCCGTTCGGGCGAATCATGCAAATCGAAGTTGGCTTGGGGTCTTC
CATAATGGAATCAATCGTGACGGTTTAGGAGATTTAGTGGTGCTTGTTCG
ACCTTTGAAGGGACTTTGTCCAGTTTTTTACTGCAAGTTCATTGAACAGT
TATGATCGTGAGTCAGCAGTGCCTTCCGTTGTCTTTGGTTCGACACATTC
GTTCGCAGAACAAACACGTTAATCGTACCTCCTCCGTACCCCCCTTCGCT
CCGTGTCGTTCCCGATTTCGCGATGTGTGGTTGCATTGGGGGTCTCGGGC
ACGTTCCTTCCGGCTGGCGCTACCCGACTTTCGTTGCCTGGTGTGCAACG
TTACGATTACGTTGAAACCCGCTCACGGTCCAGAGGAGCCTTTCAAGAAG
AGTACCTAATAGCTTCCGGGTGATGCAGCCCGATGCTTGACCCGTTTGGG
ACATCCATCCCCAAAGTTGGTCGGAAAATGTGTGTGTTGTAGTCTAAACC
AATGGGTGCTTTTGCATGGCGCTCCATTTTATGTTTGGAATGAACCAATA
CATGCATGATTAGGGATGATCTTTCCAGTATTTATATTTCAATCGGTGAG
GATGGCGTGTTGTCGTGATTTTTGAGCCTTTGGAGTAAGATACCATCTGG
GTGGGCATGTCTTGTACATAATCACCTGCCGAGCTGTGTTCCGTATTGAT
GCAAGCAGCGGGCCATTCGCTGTTTGGTAGCAGCAAGCACGTTTGTATTT
AATTCTTCAGTGTTGCCTGGGATCGAGGGATGGCCAGTGATTACCAAGGG
ATGGGATAGGAAAGGAAATTAGACTGAAACAGAGCCACAACTCTACACAC
AATGGTCGGATTCCCTCCACAGTGAAAGATCGAGTCACATTTGGCCCCGG
CTTGGGATCCACGTGCGCAAGGGCTTTCTGGTTTTGGTCTGATTGAGATT
TTTTCTGGGTGTTGGGCGTCTGTCTTCCTTTTGTGCGCTTCCCTCGCTCT
TCAAAGGCAAAATGAAACCATCAGACTAAATAGTCCTG
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Coding sequence (CDS) from alignment at Scaffold_68:142195..144882-

>EsuBft1178_4a-0001 ID=EsuBft1178_4a-0001|Name=EsuBft1178_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=687bp|location=Sequence derived from alignment at Scaffold_68:142195..144882- (Ectocarpus subulatus male Bft15b)
ATGGAGAAGAGTGGGAGCCTCACAGAGTGGGTGTACGCGTTCCTGACCGA
TCCAGAGGACCTTACCATGGTGTCGACGGCAATACAGTTGTCCTACAGCT
GCATTACAAGTACATCCACCAGCCACGTCTTCAACTCGGTGGGAATCGGC
CTCACCAACCAGATTAAATATACCGGGGACATCATTTCTTCGTACAAGGC
TGTATCGATAAACTCCGGGGTGTACAAGGATCAGGCGGACGGTGACATCA
CCAAGCCATACGCCCGTTTGTCGATGGAGCTCAAGCAACAGTTTGACTCA
TGGGAGATCATCACAGAAGCGGACCCATTCGAATTCGCCGAGATTCTTGG
TAACATCGGAGGGTTTTGGGATCTGATCCTGATTTTATGGCCTTTGTTCT
TTGTGGCGGCCAGCCAGCCAGAACCAAATCTCAAGCCTCGCAACTTTGCG
AAATCGTTCACCAGGACAGTAGAGCGCTTCTCGGGCATGACGAAAACAGT
CGCCAACTCGGGGCCTATGAGGCGTATCGAATCTATCGAGATGAGAAACG
GAACGAGCGGTGCATCCCTGGAAGACGGCCTCCAAGAAGAGCCGGTGCCG
TGGGAACATCCACCCGCATTAGGGGTACAGAGGAGCCTTTCAAGAAGAGT
ACCTAATAGCTTCCGGGTGATGCAGCCCGATGCTTGA
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