EsuBft1178_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1178_7a-0001
Unique NameEsuBft1178_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:118782..119330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1178_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length54
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_7aEsuBft1178_7aEctocarpus subulatus male Bft15bgeneScaffold_68 118782..119330 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_7a-0001-exonEsuBft1178_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 118782..119330 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_7a-0001-exonagat-five_prime_utr-1128Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 118782..118964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_7a-0001-cdsEsuBft1178_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 118965..119330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1178_7a-0001EsuBft1178_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 118965..119330 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1178_7a-0001 ID=EsuBft1178_7a-0001|Name=EsuBft1178_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=549bp|location=Sequence derived from alignment at Scaffold_68:118782..119330+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCCCCGGCCGGGGCCGAAATCGACCTTGTGAGTCCCTCGCGGACGAACC
AGGCCACAACAGATAGTAGGTGGGTGGTGTCCCAAGGTGCAACTCACCGC
CGCGCTGGCTCAGCGTGGCGGTGAGGATGCACAGACGGTGGTAGTGGCGA
GAGGTGTATGTGGACCTTGTCCCCGCGGCAGCAATGCAAAGCGGCAAACT
GCACCTGGTAACCACCGTCGCGGAAAACGTGGCCCACGAAGCTGGAGGAG
CAGAGAGATTCGTAAAAACCACGCGAGTAAGCACCGTTCGCGGGAGAAGG
GAGATAACCGCGGGCGACGCGGGGGGGGAGTGCTGCACCCTCCTCGTCCA
AACACCACAGGCAAGCACCGAGCCCTGCAAAGATGGATCGATGCGAAGAA
ACTCGCCGCTCGGATTAAACGGAAGAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft1178_7a-0001

>EsuBft1178_7 ID=EsuBft1178_7|Name=EsuBft1178_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=122bp
MQSGKLHLVTTVAENVAHEAGGAERFVKTTRVSTVRGRREITAGDAGGEC
CTLLVQTPQASTEPCKDGSMRRNSPLGLNGRXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_68:118782..119330+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1178_7a-0001 ID=EsuBft1178_7a-0001|Name=EsuBft1178_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=549bp|location=Sequence derived from alignment at Scaffold_68:118782..119330+ (Ectocarpus subulatus male Bft15b)
CTCCCCGGCCGGGGCCGAAATCGACCTTGTGAGTCCCTCGCGGACGAACC
AGGCCACAACAGATAGTAGGTGGGTGGTGTCCCAAGGTGCAACTCACCGC
CGCGCTGGCTCAGCGTGGCGGTGAGGATGCACAGACGGTGGTAGTGGCGA
GAGGTGTATGTGGACCTTGTCCCCGCGGCAGCAATGCAAAGCGGCAAACT
GCACCTGGTAACCACCGTCGCGGAAAACGTGGCCCACGAAGCTGGAGGAG
CAGAGAGATTCGTAAAAACCACGCGAGTAAGCACCGTTCGCGGGAGAAGG
GAGATAACCGCGGGCGACGCGGGGGGGGAGTGCTGCACCCTCCTCGTCCA
AACACCACAGGCAAGCACCGAGCCCTGCAAAGATGGATCGATGCGAAGAA
ACTCGCCGCTCGGATTAAACGGAAGAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_68:118782..119330+

>EsuBft1178_7a-0001 ID=EsuBft1178_7a-0001|Name=EsuBft1178_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=366bp|location=Sequence derived from alignment at Scaffold_68:118782..119330+ (Ectocarpus subulatus male Bft15b)
ATGCAAAGCGGCAAACTGCACCTGGTAACCACCGTCGCGGAAAACGTGGC
CCACGAAGCTGGAGGAGCAGAGAGATTCGTAAAAACCACGCGAGTAAGCA
CCGTTCGCGGGAGAAGGGAGATAACCGCGGGCGACGCGGGGGGGGAGTGC
TGCACCCTCCTCGTCCAAACACCACAGGCAAGCACCGAGCCCTGCAAAGA
TGGATCGATGCGAAGAAACTCGCCGCTCGGATTAAACGGAAGAAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNN
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