EsuBft2314_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2314_2a-0001
Unique NameEsuBft2314_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:101229..101863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2314_2
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length35
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_2aEsuBft2314_2aEctocarpus subulatus male Bft15bgeneScaffold_68 101229..101863 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_2a-0001-exonagat-exon-68497Ectocarpus subulatus male Bft15bexonScaffold_68 101229..101382 -
EsuBft2314_2a-0001-exonagat-exon-68496Ectocarpus subulatus male Bft15bexonScaffold_68 101462..101479 -
EsuBft2314_2a-0001-exonEsuBft2314_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 101685..101863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_2a-0001-cdsEsuBft2314_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 101229..101382 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_2a-0001-exonagat-five_prime_utr-5966Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_68 101759..101863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_2a-0001EsuBft2314_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 101229..101758 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2314_2a-0001 ID=EsuBft2314_2a-0001|Name=EsuBft2314_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=351bp|location=Sequence derived from alignment at Scaffold_68:101229..101863- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGAAAGGGGCGGTGTTGCCGCCGCACAGAAAGCGCTGACAGAAAAGGA
GCATGAGTTGGTCGAAAGTAAACAGCGCGAGGCGGCAAGCACCGCTGAGT
GCAGCATGGCTCAGGAGCTCGCGCGCGAGAGCACCGAGGCGCTAAAGGAG
GAGAAGGCTAAGAGAGCAGAGGCAGAGCGGTTGCGGACGGCGCTAGGGTG
TTTTTTGGTTCTGGCGGGGTTCTTCGGAGCGTTCGATTTGATTTTATTGG
CTCGAGCGATTTTCCATCTGGAAGATCCAGGACACTTGTCGAAAATTTTT
CCTGTAGGAAATTTGACCGATTGGCACCCCTCCGTGGCATGTGTGCCATA
G
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protein sequence of EsuBft2314_2a-0001

>EsuBft2314_2 ID=EsuBft2314_2|Name=EsuBft2314_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=81bp
MAQELARESTEALKEEKAKRAEAERLRTALGCFLVLAGFFGAFDLILLAR
AIFHLEDPGHLSKIFPVGNLTDWHPSVACVP
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mRNA from alignment at Scaffold_68:101229..101863-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2314_2a-0001 ID=EsuBft2314_2a-0001|Name=EsuBft2314_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=635bp|location=Sequence derived from alignment at Scaffold_68:101229..101863- (Ectocarpus subulatus male Bft15b)
GTCGAAAGGGGCGGTGTTGCCGCCGCACAGAAAGCGCTGACAGAAAAGGA
GCATGAGTTGGTCGAAAGTAAACAGCGCGAGGCGGCAAGCACCGCTGAGT
GCAGCATGGCTCAGGAGCTCGCGCGCGAGAGCACCGAGGCGCTAAAGGAG
GAGAAGGCTAAGAGAGCAGAGGCAGAGCGGTCGCAGCAAGAGGCAGAGCG
GAGGAAGCAAGAGGCTGAACGAGACAAGGCGAAGGCGGAGGCGGTGGGCG
TAGATGATGGGTGCTTCCTCGCTGCTGCTGTTTTTTTCGCCAGCAGCAGG
AGGAGCACTGCTTCCTCCAGCAGGAGTCCGCGCGGTCCCACCGCCCGGCG
GCTGTTCGAGTGAGCCACCAGGCATGTTTGCTAGGTTGCGGACGGCGCTA
GGGTGCCGCTAGGGTGCCGTGTGCAACCTCCACGGCACGGCGGAACGCGT
TCACACACGCTTCGCGGTCGCGGGGCGTCAGGTGTTTTTTGGTTCTGGCG
GGGTTCTTCGGAGCGTTCGATTTGATTTTATTGGCTCGAGCGATTTTCCA
TCTGGAAGATCCAGGACACTTGTCGAAAATTTTTCCTGTAGGAAATTTGA
CCGATTGGCACCCCTCCGTGGCATGTGTGCCATAG
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Coding sequence (CDS) from alignment at Scaffold_68:101229..101863-

>EsuBft2314_2a-0001 ID=EsuBft2314_2a-0001|Name=EsuBft2314_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=246bp|location=Sequence derived from alignment at Scaffold_68:101229..101863- (Ectocarpus subulatus male Bft15b)
ATGGCTCAGGAGCTCGCGCGCGAGAGCACCGAGGCGCTAAAGGAGGAGAA
GGCTAAGAGAGCAGAGGCAGAGCGGTTGCGGACGGCGCTAGGGTGTTTTT
TGGTTCTGGCGGGGTTCTTCGGAGCGTTCGATTTGATTTTATTGGCTCGA
GCGATTTTCCATCTGGAAGATCCAGGACACTTGTCGAAAATTTTTCCTGT
AGGAAATTTGACCGATTGGCACCCCTCCGTGGCATGTGTGCCATAG
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