EsuBft2314_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2314_3a-0001
Unique NameEsuBft2314_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:96038..98484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft2314_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length137
Hectar predicted targeting categoryother localisation
Evalue2.09e-121
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_3aEsuBft2314_3aEctocarpus subulatus male Bft15bgeneScaffold_68 96038..98484 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_3a-0001-exonagat-exon-68499Ectocarpus subulatus male Bft15bexonScaffold_68 96038..96542 -
EsuBft2314_3a-0001-exonagat-exon-68498Ectocarpus subulatus male Bft15bexonScaffold_68 96718..97090 -
EsuBft2314_3a-0001-exonEsuBft2314_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 97984..98484 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_3a-0001-exonagat-three_prime_utr-9264Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 96038..96060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_3a-0001-cdsEsuBft2314_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 96061..96542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2314_3a-0001EsuBft2314_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 96061..98484 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2314_3a-0001 ID=EsuBft2314_3a-0001|Name=EsuBft2314_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1379bp|location=Sequence derived from alignment at Scaffold_68:96038..98484- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAGGGGGAT
CATATCCCAGTGCAATCCCGTATCTCATGGGATGTTGAAACAGCTTGGCA
AACTTGCTGAGTTGAAACAAAAGGGTCTGATTCTTGACCGTCACTTCGAG
ACAATCAAAGCACACGTGAAGGTGGGCAACTCCGTTGCTAAGGAGCGATG
GGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTCGACG
AAGAAGAGTGGGTCACGCAGATTGACGGCGAAACGCAGGGTATTACCAGC
AGCACCCGCATGTCCTCTTCATCCCAACAAGATGCCGGCAGCGCGCGAGG
TGCTGCACCGCCGTCTCAGCACCCACCTGCTGCTGCAGGTACCGCAAGGA
GAAAGGCCGTGGATCGCGGGAAACAAGTTAGGGAGAGAGCTGCCAAAGGC
ACTTTAGGCGGCAACATCTGCATCGCGTTCGCGATTGGCAGCCGAGGACC
GATGGACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCG
CGTCGCTGATAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGA
GCGGCCATGGCAAGACTCAACAGCCAGATGGCGTACAGATACCGTCTTTT
CGAAAAGTGCGGGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGAC
TCACCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGAC
AGTAGCGACGACGAACAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGG
GCGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTAG
ACTCAAGCGATGAAGACAACGGCGACATCTCTCAACCCCAGACCGACGAG
CTAGCTCTTGTGGACGACGACGACAGCATGGACCCACAAGACCCGGAGGA
TGAGATACAGGGAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTA
ATCCCGTTGCTCTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTTAGG
CTGGGCATGGGGTGGTTTGGAGGGCTGATCACTCAACAATCTCAGAAGGA
CACTCGCCACGTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTA
CGCGCAAGATAAAGTTGCCCTTGGACAAGTACAGTCGAGATTCGGATGCG
GCTGTAGGCTCCTGGGTTTTGCTTGAGAGCATAAGTAGATCAGGAAGGGT
ACGCAGGACCAACGTCACCCTTGTGGACCAAGAAGGTCGACAGTTGCTGC
TCCATGCCTTGGTTTTTACTTGTATCGACAGCAGTACTAGTGTTGCTCAT
GGTTGACAGCCGACAATATAGCAAATGGT
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protein sequence of EsuBft2314_3a-0001

>EsuBft2314_3 ID=EsuBft2314_3|Name=EsuBft2314_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=451bp
MPRNVQRATSCLRCRGIISQCNPVSHGMLKQLGKLAELKQKGLILDRHFE
TIKAHVKVGNSVAKERWDAIESAWGLKQNGVFDEEEWVTQIDGETQGITS
STRMSSSSQQDAGSARGAAPPSQHPPAAAGTARRKAVDRGKQVRERAAKG
TLGGNICIAFAIGSRGPMDIWLEQSDNLERWETASLIASDRRVLITQWMG
AAMARLNSQMAYRYRLFEKCGMAMTVDGSGDDRLTLEGLDKPYTFANDED
SSDDEQGSENGNDEPEGRAEEGDGGRETLMEGVDSSDEDNGDISQPQTDE
LALVDDDDSMDPQDPEDEIQGMEIPAGFRIQEANPVALDRLLLRRGVLVR
LGMGWFGGLITQQSQKDTRHVYDYCVQLELDQSTRKIKLPLDKYSRDSDA
AVGSWVLLESISRSGRVRRTNVTLVDQEGRQLLLHALVFTCIDSSTSVAH
G
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mRNA from alignment at Scaffold_68:96038..98484-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2314_3a-0001 ID=EsuBft2314_3a-0001|Name=EsuBft2314_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2447bp|location=Sequence derived from alignment at Scaffold_68:96038..98484- (Ectocarpus subulatus male Bft15b)
ATGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAGGGGGAT
CATATCCCAGTGCAATCCCGTATCTCATGGGATGTTGAAACAGCTTGGCA
AACTTGCTGAGTTGAAACAAAAGGGTCTGATTCTTGACCGTCACTTCGAG
ACAATCAAAGCACACGTGAAGGTGGGCAACTCCGTTGCTAAGGAGCGATG
GGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTCGACG
AAGAAGAGTGGGTCACGCAGATTGACGGCGAAACGCAGGGTATTACCAGC
AGCACCCGCATGTCCTCTTCATCCCAACAAGATGCCGGCAGCGCGCGAGG
TGCTGCACCGCCGTCTCAGCACCCACCTGCTGCTGCAGGTACCGCAAGGA
GAAAGGCCGTGGATCGCGGGAAACAAGTTAGGGAGAGAGCTGCCAAAGGC
ACTTTAGGCGGCAACATCTGCATCGCGTTCGCGATTGGCAGCCGAGGACC
GGTGAGCACACAGTTACTTTTCGCTACCGGTGTAGTCTACATACACTATT
TTCCTTTTTCAAGAAAAACTCCCGTGAAAACGATGACATGATGAGGGCCA
TTTTTTTTCAGTAGCGGCGCGTAATAAAAAAAAAAAAGAGAAAGTTCGTA
GTTTTGGGGCTGGCCTCTGCTGGCAACGACTGCGTTTCGCACGCCGTTTC
TTGCTGTAGGTGCCCAAGCAAGTGGAGGAGTGTCGAGTTCTCGTCAACTG
CGTCTGCTGGCAAGGGCCAACTCCGGTGCAAATACTCCGGAAAAGTTAAG
CCTTTTTCAGATTCGTGGAATGCTGCTGCTGTGTAGACATGATAAGATAA
AATTTTCGTCCATCCCCCTTTTTAAAAGAAGATAGTGTAGACAGATATTC
TAGTTTGGATGCCGGCGACGTTGTTTTGGCGTCACAACAGTGAACATTCT
CTGCTTGATACTTAGTTTGAATAGTCACGAACGAAACAGACAGCTTTCGG
CTCTCCACGGAGGTTTGAGGTCGAAAGCGCCACACTCCATAGCGAACGAT
ACATGACATGACTCGTTGAATCACCCCCCCGGCAACTCCGCCCTGCTTCC
ACCTTGCCATGCAGATTGAGCGGACTCGCGGTGGAGTGAAAGAGCTCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCGGGAGGCAGATGGAC
ATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCT
GATAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGAGCGGCCA
TGGCAAGACTCAACAGCCAGATGGCGTACAGATACCGTCTTTTCGAAAAG
TGCGGGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGACTCACCTT
GGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGACAGTAGCG
ACGACGAACAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCG
GAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTAGACTCAAG
CGATGAAGACAACGGCGGTAAGTTTGTTTTGCACAAAACCAACTCTTCAT
CTTCTTTTTGTTGATGACGATGTCCTTCATGTTGACGTTAGCTTGTTTCC
GCCCACGGCTACACTCAAACTATGAAAACTTCAGGTTGAGTTTGGCGACG
TGACACCCTAACTTCTTGTGTTTCCCGTTGCCTCGTTCGCAGACATCTCT
CAACCCCAGACCGACGAGCTAGCTCTTGTGGACGACGACGACAGCATGGA
CCCACAAGACCCGGAGGATGAGATACAGGGAATGGAGATCCCGGCAGGCT
TTCGTATTCAAGAAGCTAATCCCGTTGCTCTTGACAGATTGCTTTTGCGG
CGTGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGAGGGCTGATCAC
TCAACAATCTCAGAAGGACACTCGCCACGTGTACGACTACTGTGTGCAGC
TGGAGCTAGACCAGAGTACGCGCAAGATAAAGTTGCCCTTGGACAAGTAC
AGTCGAGATTCGGATGCGGCTGTAGGCTCCTGGGTTTTGCTTGAGAGCAT
AAGTAGATCAGGAAGGGTACGCAGGACCAACGTCACCCTTGTGGACCAAG
AAGGTCGACAGTTGCTGCTCCATGCCTTGGTTTTTACTTGTATCGACAGC
AGTACTAGTGTTGCTCATGGTTGACAGCCGACAATATAGCAAATGGT
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Coding sequence (CDS) from alignment at Scaffold_68:96038..98484-

>EsuBft2314_3a-0001 ID=EsuBft2314_3a-0001|Name=EsuBft2314_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1356bp|location=Sequence derived from alignment at Scaffold_68:96038..98484- (Ectocarpus subulatus male Bft15b)
ATGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAGGGGGAT
CATATCCCAGTGCAATCCCGTATCTCATGGGATGTTGAAACAGCTTGGCA
AACTTGCTGAGTTGAAACAAAAGGGTCTGATTCTTGACCGTCACTTCGAG
ACAATCAAAGCACACGTGAAGGTGGGCAACTCCGTTGCTAAGGAGCGATG
GGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTCGACG
AAGAAGAGTGGGTCACGCAGATTGACGGCGAAACGCAGGGTATTACCAGC
AGCACCCGCATGTCCTCTTCATCCCAACAAGATGCCGGCAGCGCGCGAGG
TGCTGCACCGCCGTCTCAGCACCCACCTGCTGCTGCAGGTACCGCAAGGA
GAAAGGCCGTGGATCGCGGGAAACAAGTTAGGGAGAGAGCTGCCAAAGGC
ACTTTAGGCGGCAACATCTGCATCGCGTTCGCGATTGGCAGCCGAGGACC
GATGGACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCG
CGTCGCTGATAGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGA
GCGGCCATGGCAAGACTCAACAGCCAGATGGCGTACAGATACCGTCTTTT
CGAAAAGTGCGGGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGAC
TCACCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGAC
AGTAGCGACGACGAACAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGG
GCGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTAG
ACTCAAGCGATGAAGACAACGGCGACATCTCTCAACCCCAGACCGACGAG
CTAGCTCTTGTGGACGACGACGACAGCATGGACCCACAAGACCCGGAGGA
TGAGATACAGGGAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTA
ATCCCGTTGCTCTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTTAGG
CTGGGCATGGGGTGGTTTGGAGGGCTGATCACTCAACAATCTCAGAAGGA
CACTCGCCACGTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTA
CGCGCAAGATAAAGTTGCCCTTGGACAAGTACAGTCGAGATTCGGATGCG
GCTGTAGGCTCCTGGGTTTTGCTTGAGAGCATAAGTAGATCAGGAAGGGT
ACGCAGGACCAACGTCACCCTTGTGGACCAAGAAGGTCGACAGTTGCTGC
TCCATGCCTTGGTTTTTACTTGTATCGACAGCAGTACTAGTGTTGCTCAT
GGTTGA
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