EsuBft3086_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3086_2a-0001
Unique Name	EsuBft3086_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:56339..57299 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3086_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	96
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_2a	EsuBft3086_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 56339..57299 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_2a-0001-exon	EsuBft3086_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 56339..57299 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_2a-0001-exon	agat-three_prime_utr-12241	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 56339..56996 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_2a-0001-cds	EsuBft3086_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 56997..57299 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_2a-0001	EsuBft3086_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 56997..57299 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:56339..57299-
coding sequence from alignment at Scaffold_68:56339..57299-

spliced messenger RNA

>EsuBft3086_2a-0001 ID=EsuBft3086_2a-0001|Name=EsuBft3086_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=961bp|location=Sequence derived from alignment at Scaffold_68:56339..57299- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCCATAGCGCGTCGGGAGGGCGTGGGGGGGAGGCAAACATTAG
CCCCATGGCGCGTCGGACGGAGCGTGAGGGGGAGAGAAAATCGAAGCAGT
CCCGTGGCGCATCGGAAGGGGCGAGAGCGGGAACCCCGCGGCACGTCGGA
AGGCGCGTGGGGGTAGGGTACTTGCATCGTGGTGCTCAAACGGGAACTCC
TTTTGTGGCGAGGCTACAGGCCGGGACGAGCGCTGGGAGGGGAGGCACAC
GCATCACAGCGCTGGATTGTGGCAATTCTTTCTTGACGGTATTTGGTGTT
TGATGGTATTCGTAGCGAAGTTGGTAAATCCTCGTGAGTTGTCATGACTG
TACTTTGGTTGAAGAGCCAGGGAGGGTGTTCCGTGTTTCTCGTAGGCGTT
CGCGCCCACATGTTCAGTATTTCCTGATAGTCATTCGGTTGAGACCCTCA
TTGATTGCGGCTACGTGGTGCCGTTCTCTAGGTTGCGCAATGTGCAGGAA
TATGGGATACCGTTGGAACCGCTGAAGGAGCGTAGGAGGAAAAATTGGGA
CACCAGTGTTGTACTCCACGAGAGTAGAGGATTGCCGAAAAATGCATGCC
GGTTATGTGTCGCTCAGAAAATGTTGGATGATTGCCTTCCGCCCCGGTGC
GCTGTATTTCATCAGCGAGGGGGGGCGATTTCGATGTTTGTCTGATGTTT
GTTTGAAGAACAAACAGTAGTGCAGCCGCATTGTAGTTGTTTGAACCAAC
TCCTCAGGATAGTCTTGCACTTTTACTGCTTGCCAAGCGTTGGGATAGGG
CGTTTGATGGAACGGTGAATATTGGTTGGGGTTTTGACCCGGAGGCCGGG
TTTCCCCCTGTTGGTATTTTTCGTTGATTTTTTGTCCGTTTGATTTTTTG
GTCACATCCGGCGTGTGAATGCCCACTAAGTGGTTAGNNNNNNNNNNNNN
NNNNNNNNNNN

protein sequence of EsuBft3086_2a-0001

>EsuBft3086_2 ID=EsuBft3086_2|Name=EsuBft3086_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MQPHSASGGRGGEANISPMARRTEREGERKSKQSRGASEGARAGTPRHVG
RRVGVGYLHRGAQTGTPFVARLQAGTSAGRGGTRITALDCGNSFLTVFGV

mRNA from alignment at Scaffold_68:56339..57299-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3086_2a-0001 ID=EsuBft3086_2a-0001|Name=EsuBft3086_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=961bp|location=Sequence derived from alignment at Scaffold_68:56339..57299- (Ectocarpus subulatus male Bft15b)
ATGCAGCCCCATAGCGCGTCGGGAGGGCGTGGGGGGGAGGCAAACATTAG
CCCCATGGCGCGTCGGACGGAGCGTGAGGGGGAGAGAAAATCGAAGCAGT
CCCGTGGCGCATCGGAAGGGGCGAGAGCGGGAACCCCGCGGCACGTCGGA
AGGCGCGTGGGGGTAGGGTACTTGCATCGTGGTGCTCAAACGGGAACTCC
TTTTGTGGCGAGGCTACAGGCCGGGACGAGCGCTGGGAGGGGAGGCACAC
GCATCACAGCGCTGGATTGTGGCAATTCTTTCTTGACGGTATTTGGTGTT
TGATGGTATTCGTAGCGAAGTTGGTAAATCCTCGTGAGTTGTCATGACTG
TACTTTGGTTGAAGAGCCAGGGAGGGTGTTCCGTGTTTCTCGTAGGCGTT
CGCGCCCACATGTTCAGTATTTCCTGATAGTCATTCGGTTGAGACCCTCA
TTGATTGCGGCTACGTGGTGCCGTTCTCTAGGTTGCGCAATGTGCAGGAA
TATGGGATACCGTTGGAACCGCTGAAGGAGCGTAGGAGGAAAAATTGGGA
CACCAGTGTTGTACTCCACGAGAGTAGAGGATTGCCGAAAAATGCATGCC
GGTTATGTGTCGCTCAGAAAATGTTGGATGATTGCCTTCCGCCCCGGTGC
GCTGTATTTCATCAGCGAGGGGGGGCGATTTCGATGTTTGTCTGATGTTT
GTTTGAAGAACAAACAGTAGTGCAGCCGCATTGTAGTTGTTTGAACCAAC
TCCTCAGGATAGTCTTGCACTTTTACTGCTTGCCAAGCGTTGGGATAGGG
CGTTTGATGGAACGGTGAATATTGGTTGGGGTTTTGACCCGGAGGCCGGG
TTTCCCCCTGTTGGTATTTTTCGTTGATTTTTTGTCCGTTTGATTTTTTG
GTCACATCCGGCGTGTGAATGCCCACTAAGTGGTTAGNNNNNNNNNNNNN
NNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_68:56339..57299-

>EsuBft3086_2a-0001 ID=EsuBft3086_2a-0001|Name=EsuBft3086_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_68:56339..57299- (Ectocarpus subulatus male Bft15b)
ATGCAGCCCCATAGCGCGTCGGGAGGGCGTGGGGGGGAGGCAAACATTAG
CCCCATGGCGCGTCGGACGGAGCGTGAGGGGGAGAGAAAATCGAAGCAGT
CCCGTGGCGCATCGGAAGGGGCGAGAGCGGGAACCCCGCGGCACGTCGGA
AGGCGCGTGGGGGTAGGGTACTTGCATCGTGGTGCTCAAACGGGAACTCC
TTTTGTGGCGAGGCTACAGGCCGGGACGAGCGCTGGGAGGGGAGGCACAC
GCATCACAGCGCTGGATTGTGGCAATTCTTTCTTGACGGTATTTGGTGTT
TGA