EsuBft3086_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3086_3a-0001
Unique Name	EsuBft3086_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:48851..51708 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3086_3
Protein domains	PF14227
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	277
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_3a	EsuBft3086_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 48851..51708 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_3a-0001-exon	EsuBft3086_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 48851..49828 +
EsuBft3086_3a-0001-exon	agat-exon-73076	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 49910..51708 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_3a-0001-cds	EsuBft3086_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 48851..49828 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_3a-0001-exon	agat-three_prime_utr-12242	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_68 50294..51708 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3086_3a-0001	EsuBft3086_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 48851..50293 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:48851..51708+
coding sequence from alignment at Scaffold_68:48851..51708+

spliced messenger RNA

>EsuBft3086_3a-0001 ID=EsuBft3086_3a-0001|Name=EsuBft3086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2777bp|location=Sequence derived from alignment at Scaffold_68:48851..51708+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCACCACTAGTAC
GCAGGGCAGAGTTGACAACCTGGAGAGCAAAGTTTCAGGCCTGCCGGACG
AGGTACAGCAGCTGGCTGGGCTGCTTCGATCCGCCCTCGGAAAGTTAGAG
AAGGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCGTTACGGGCGA
TGCGCCCACCCGCGGTACCCAGGAGGGGGCACCGCAAAACGAGGGAATCA
CGCCACCCTCAGACCCGGCGGTTGGGCCGGGTGGCGGACGTGACAGGGGA
TCGCTCCCCCAAGGTGAGACAACCGAGACATATGGCGGCGGTACCGGTGG
TTTTGGCGGATTCGTCGGAGAAGGAGATGGTTTTCACCAGAACCCGTATA
GCAAAATGCGTGTGTCAGTGCACGCGCCGCGTCTCGAAGGCGGCCAGGGA
TATTGCTCGTGGAGGAGGGCCTTTATCCAGGCTGCTAAAACAGTAGACAT
GGACGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACA
TGAACAAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAG
ATCCACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAG
GGAGCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGT
TGGATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAG
GAGTTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCC
GACTGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGA
GAGGGGTCAAGGTCGAGGCTTCTTTCGTGCTGTCGCTCTTCCTTTCGGCC
CTACCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGAC
TCTGGACCGGGGAGAGGTCATCAGAGTGGGATTACTCGTGAGCGCCGACA
ATGGCAGCGGCGGAAAAGCTGGTCGCAACCGCGGCCGCGGGGGACGCGGC
GGTGGCGGAAACGGCGAAAATGGCGGCAGCGGCAACGGCAACGGCAACGG
CGGTGGAGACGGCAGCAGCTACGGCGGCCGTCGTAGGGGCCGGTGCTACC
GGTGCAAGAGGCGAGGGCACCAGTCGTTCTCGTGCACTACCCCCATCGCC
GACTTCATGACCCAGTGCGAGAACTGCGACGGGTATGGACACGATAAGAG
CAAGTGCCCGTCGGCGAAGGACGAGGAGGAGGCGAAGGGCGAGACGGCGG
TCATGGCGGTTGCGGTGGCGAGCGATGACGAGGAGCTGGATGTGGCACGT
GAGGCCTTGTAAGAAGAAGCGGGGGAAAGACACAATATCCGCGCTGGTCA
CTACGCGCGCACCATCCACACACAGCAGCAGCAGGAGATGATGAAGATTG
CACCATTGCAACAGCGTGGAAGGGCGGAGACACAGAAAACCGGCGGCAAG
GCTGTGTGCCCCATGGCCGCGACGGGAGGGGCGTGGGGGGGGCAATATTG
AGAAGGATACGGCGAGATGGCCGTGCGCCCATAGCCGCGACGGGAGTGGC
GTGGGGGGGCAACATTCAGAGAACACGGCGGTAGGGCCGTGTGCCCACAG
CCGCGACGGGAGGGGCGCGGGAGGGCAACAACTAAAGAACACGGCGGTAG
GGCCGTGTGCTCGCAGCCGCGACGGGAGGGGCGCGGGAGGGCAACAACCA
AATAAAACGGCGGGAGGGCCGTGTGCTCGCAGCTGCGACGGGAGGGGCGC
GGGAGGGCGACAATCAATGCAGCCCCATAGCGCGTCGGGAGGGCGTGGGG
GGGAGGCAAACATTAGCCCCATGGCGCGTCGGACGGCGCGTGAGGGGGAG
AGAAAATCGAAGCAGTCCCGTGGCGCATCGGAAGGGGCGAGAGCGGGAAC
CCCGCGGCACGTCGGAAGGCGCGTGGGGGTAGGGTACTTGCATCGTGGTG
CTAAAACGGGAACTCCTTTTGTGGCGAGGCTACAGGCCGGGACGAGCGCT
GGGAGGGGAGGCACACGCATCACAGCGCTGGATTGTGGCAATTCTTTCTT
GACGGTATTTGGTGTTTGATGGTATTCGTAGCGAAGTTGGTAAATCCTCG
TGAGTTGTCATGACTGTACTTTGGTTGAAGAGCCAGGGAGGGTGTTCCGT
GTTTCTCGTAGGCGTTCGCGTCCACATGTTCAGTATTTCCTGATAGTCAT
TCGGTTGAGACCCTCATTGATTGCGGCTACGTGGTGCCGTTCTCTAGGTT
GCGCAATGTGCAGGAATATGGGATACCGTTGGAACCGCTGAAGGAGCGTA
GGAGGAAAAATTGGGACACCAGTGTTGTACTCCACGAGAGTAGAGGATTG
CCGAAAAATGCATGCCGGTTATGTGTCGCTCAGAAAATGTTGGATGATTG
CCTTCCGCCCCGGTGCGCTGTATTTCATCAGCGAGGGGGGGCGATTTCGA
TGTTTGTCTGATGTTTGTTTGAAGAACAATCAGTAGTGCAGCCGCATTGT
AGTTGTTTGAACCAACTCCTCAGGATAGTCTTGCACTTTTACTGCTTGCC
AAGCGTTGGGATAGGGCGTTTGATGGAACGGTGAATATTGGTTGGGGTTT
TGACCCGGAGGCCGGGTTTCCCCCTGTTGGTATTTTTCGTTGGTTTTTTG
TCCGTTTGATTTTTTGGTCACATCCGGCGTGTGAATGCCCACTAAGTGGT
TAGTTTCTATCGAAAAGAACCAGGGAG

protein sequence of EsuBft3086_3a-0001

>EsuBft3086_3 ID=EsuBft3086_3|Name=EsuBft3086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=453bp
MSGADVAAEAADVTTSTQGRVDNLESKVSGLPDEVQQLAGLLRSALGKLE
KEGESGGAGVGAVVTGDAPTRGTQEGAPQNEGITPPSDPAVGPGGGRDRG
SLPQGETTETYGGGTGGFGGFVGEGDGFHQNPYSKMRVSVHAPRLEGGQG
YCSWRRAFIQAAKTVDMDGQFVGATEPQPDVGDMNKPKATLLAEGYSEAQ
IHRSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQ
ELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVKVEASFVLSLFLSA
LPAEYDHAKLTLQSAPTLDRGEVIRVGLLVSADNGSGGKAGRNRGRGGRG
GGGNGENGGSGNGNGNGGGDGSSYGGRRRGRCYRCKRRGHQSFSCTTPIA
DFMTQCENCDGYGHDKSKCPSAKDEEEAKGETAVMAVAVASDDEELDVAR
EAL

mRNA from alignment at Scaffold_68:48851..51708+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3086_3a-0001 ID=EsuBft3086_3a-0001|Name=EsuBft3086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2858bp|location=Sequence derived from alignment at Scaffold_68:48851..51708+ (Ectocarpus subulatus male Bft15b)
ATGAGTGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCACCACTAGTAC
GCAGGGCAGAGTTGACAACCTGGAGAGCAAAGTTTCAGGCCTGCCGGACG
AGGTACAGCAGCTGGCTGGGCTGCTTCGATCCGCCCTCGGAAAGTTAGAG
AAGGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCGTTACGGGCGA
TGCGCCCACCCGCGGTACCCAGGAGGGGGCACCGCAAAACGAGGGAATCA
CGCCACCCTCAGACCCGGCGGTTGGGCCGGGTGGCGGACGTGACAGGGGA
TCGCTCCCCCAAGGTGAGACAACCGAGACATATGGCGGCGGTACCGGTGG
TTTTGGCGGATTCGTCGGAGAAGGAGATGGTTTTCACCAGAACCCGTATA
GCAAAATGCGTGTGTCAGTGCACGCGCCGCGTCTCGAAGGCGGCCAGGGA
TATTGCTCGTGGAGGAGGGCCTTTATCCAGGCTGCTAAAACAGTAGACAT
GGACGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACA
TGAACAAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAG
ATCCACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAG
GGAGCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGT
TGGATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAG
GAGTTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCC
GACTGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGA
GAGGGGTCAAGGTCGAGGCTTCTTTCGTGCTGTCGCTCTTCCTTTCGGCC
CTACCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGAC
TCTGGACCGGGGAGAGGTCATCAGAGTGGTGGGCTCCTAGCACTCCAGCA
TCAAGCAGGGGAAGAGCCATCGGAACAGCAACCGCAACAATCACAAGGCG
TCTGAGCAGGGATTACTCGTGAGCGCCGACAATGGCAGCGGCGGAAAAGC
TGGTCGCAACCGCGGCCGCGGGGGACGCGGCGGTGGCGGAAACGGCGAAA
ATGGCGGCAGCGGCAACGGCAACGGCAACGGCGGTGGAGACGGCAGCAGC
TACGGCGGCCGTCGTAGGGGCCGGTGCTACCGGTGCAAGAGGCGAGGGCA
CCAGTCGTTCTCGTGCACTACCCCCATCGCCGACTTCATGACCCAGTGCG
AGAACTGCGACGGGTATGGACACGATAAGAGCAAGTGCCCGTCGGCGAAG
GACGAGGAGGAGGCGAAGGGCGAGACGGCGGTCATGGCGGTTGCGGTGGC
GAGCGATGACGAGGAGCTGGATGTGGCACGTGAGGCCTTGTAAGAAGAAG
CGGGGGAAAGACACAATATCCGCGCTGGTCACTACGCGCGCACCATCCAC
ACACAGCAGCAGCAGGAGATGATGAAGATTGCACCATTGCAACAGCGTGG
AAGGGCGGAGACACAGAAAACCGGCGGCAAGGCTGTGTGCCCCATGGCCG
CGACGGGAGGGGCGTGGGGGGGGCAATATTGAGAAGGATACGGCGAGATG
GCCGTGCGCCCATAGCCGCGACGGGAGTGGCGTGGGGGGGCAACATTCAG
AGAACACGGCGGTAGGGCCGTGTGCCCACAGCCGCGACGGGAGGGGCGCG
GGAGGGCAACAACTAAAGAACACGGCGGTAGGGCCGTGTGCTCGCAGCCG
CGACGGGAGGGGCGCGGGAGGGCAACAACCAAATAAAACGGCGGGAGGGC
CGTGTGCTCGCAGCTGCGACGGGAGGGGCGCGGGAGGGCGACAATCAATG
CAGCCCCATAGCGCGTCGGGAGGGCGTGGGGGGGAGGCAAACATTAGCCC
CATGGCGCGTCGGACGGCGCGTGAGGGGGAGAGAAAATCGAAGCAGTCCC
GTGGCGCATCGGAAGGGGCGAGAGCGGGAACCCCGCGGCACGTCGGAAGG
CGCGTGGGGGTAGGGTACTTGCATCGTGGTGCTAAAACGGGAACTCCTTT
TGTGGCGAGGCTACAGGCCGGGACGAGCGCTGGGAGGGGAGGCACACGCA
TCACAGCGCTGGATTGTGGCAATTCTTTCTTGACGGTATTTGGTGTTTGA
TGGTATTCGTAGCGAAGTTGGTAAATCCTCGTGAGTTGTCATGACTGTAC
TTTGGTTGAAGAGCCAGGGAGGGTGTTCCGTGTTTCTCGTAGGCGTTCGC
GTCCACATGTTCAGTATTTCCTGATAGTCATTCGGTTGAGACCCTCATTG
ATTGCGGCTACGTGGTGCCGTTCTCTAGGTTGCGCAATGTGCAGGAATAT
GGGATACCGTTGGAACCGCTGAAGGAGCGTAGGAGGAAAAATTGGGACAC
CAGTGTTGTACTCCACGAGAGTAGAGGATTGCCGAAAAATGCATGCCGGT
TATGTGTCGCTCAGAAAATGTTGGATGATTGCCTTCCGCCCCGGTGCGCT
GTATTTCATCAGCGAGGGGGGGCGATTTCGATGTTTGTCTGATGTTTGTT
TGAAGAACAATCAGTAGTGCAGCCGCATTGTAGTTGTTTGAACCAACTCC
TCAGGATAGTCTTGCACTTTTACTGCTTGCCAAGCGTTGGGATAGGGCGT
TTGATGGAACGGTGAATATTGGTTGGGGTTTTGACCCGGAGGCCGGGTTT
CCCCCTGTTGGTATTTTTCGTTGGTTTTTTGTCCGTTTGATTTTTTGGTC
ACATCCGGCGTGTGAATGCCCACTAAGTGGTTAGTTTCTATCGAAAAGAA
CCAGGGAG

Coding sequence (CDS) from alignment at Scaffold_68:48851..51708+

>EsuBft3086_3a-0001 ID=EsuBft3086_3a-0001|Name=EsuBft3086_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1362bp|location=Sequence derived from alignment at Scaffold_68:48851..51708+ (Ectocarpus subulatus male Bft15b)
ATGAGTGGCGCCGATGTTGCAGCAGAGGCTGCCGACGTCACCACTAGTAC
GCAGGGCAGAGTTGACAACCTGGAGAGCAAAGTTTCAGGCCTGCCGGACG
AGGTACAGCAGCTGGCTGGGCTGCTTCGATCCGCCCTCGGAAAGTTAGAG
AAGGAGGGGGAGTCCGGCGGCGCTGGGGTGGGCGCTGTCGTTACGGGCGA
TGCGCCCACCCGCGGTACCCAGGAGGGGGCACCGCAAAACGAGGGAATCA
CGCCACCCTCAGACCCGGCGGTTGGGCCGGGTGGCGGACGTGACAGGGGA
TCGCTCCCCCAAGGTGAGACAACCGAGACATATGGCGGCGGTACCGGTGG
TTTTGGCGGATTCGTCGGAGAAGGAGATGGTTTTCACCAGAACCCGTATA
GCAAAATGCGTGTGTCAGTGCACGCGCCGCGTCTCGAAGGCGGCCAGGGA
TATTGCTCGTGGAGGAGGGCCTTTATCCAGGCTGCTAAAACAGTAGACAT
GGACGGCCAGTTCGTAGGGGCCACGGAACCCCAGCCGGACGTCGGGGACA
TGAACAAACCCAAAGCTACGTTGCTGGCAGAGGGGTACTCCGAGGCGCAG
ATCCACCGCAGCCTCCAAGCTTTCCACTTTCTGTCCTCGGCCCTGGTGAG
GGAGCCAGACAAGGCCGTCTTCGGGAGATGTGTGACGCCGAAGCAGGCGT
TGGATGAACTCGACAAGGTGCACAACCCGGAATCGCAGGTAGCCACACAG
GAGTTGCTCAGCAAGTTTCAGAACTTCGCAATGCCGGCCGACAAAAACCC
GACTGAATCGCTTATCGCCATGGAGCAACTCGCAAGTCGTCTGAACGAGA
GAGGGGTCAAGGTCGAGGCTTCTTTCGTGCTGTCGCTCTTCCTTTCGGCC
CTACCGGCCGAGTACGACCATGCCAAACTGACTCTGCAGTCCGCACCGAC
TCTGGACCGGGGAGAGGTCATCAGAGTGGGATTACTCGTGAGCGCCGACA
ATGGCAGCGGCGGAAAAGCTGGTCGCAACCGCGGCCGCGGGGGACGCGGC
GGTGGCGGAAACGGCGAAAATGGCGGCAGCGGCAACGGCAACGGCAACGG
CGGTGGAGACGGCAGCAGCTACGGCGGCCGTCGTAGGGGCCGGTGCTACC
GGTGCAAGAGGCGAGGGCACCAGTCGTTCTCGTGCACTACCCCCATCGCC
GACTTCATGACCCAGTGCGAGAACTGCGACGGGTATGGACACGATAAGAG
CAAGTGCCCGTCGGCGAAGGACGAGGAGGAGGCGAAGGGCGAGACGGCGG
TCATGGCGGTTGCGGTGGCGAGCGATGACGAGGAGCTGGATGTGGCACGT
GAGGCCTTGTAA