EsuBft1397_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1397_4a-0001
Unique Name	EsuBft1397_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_68	contig	Scaffold_68:6455..9049 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FXH0
ProteomeId	EsuBft1397_4
Protein domains	SSF81301
Protein domains	Coil
Protein domains	G3DSA
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	93
Hectar predicted targeting category	other localisation
Evalue	9.07e-191
EggNOG OGs	COG0457@1\|root,KOG1840@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG ko	ko:K10407
KEGG Pathway	ko05132,map05132
Description	determination of stomach left/right asymmetry
COG category	C
BRITE	ko00000,ko00001,ko03019,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1397_4a	EsuBft1397_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_68 6455..9049 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1397_4a-0001-exon	EsuBft1397_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 6455..7000 +
EsuBft1397_4a-0001-exon	agat-exon-38103	Ectocarpus subulatus male Bft15b	exon	Scaffold_68 8657..9049 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1397_4a-0001-cds	EsuBft1397_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_68 6455..7000 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1397_4a-0001	EsuBft1397_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_68 6455..9049 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_68:6455..9049+
coding sequence from alignment at Scaffold_68:6455..9049+

spliced messenger RNA

>EsuBft1397_4a-0001 ID=EsuBft1397_4a-0001|Name=EsuBft1397_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=939bp|location=Sequence derived from alignment at Scaffold_68:6455..9049+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTCGACATCGCGGAGCTTCTCCGCCTGGAGGCAGAGCTGGAGAA
CTCATGTGAAGATTGCCGAAACCCATACGATCGAGACGCCAAGCTGAATT
TGCTCAAGTTTCTTCAAATCAGGGCGGTACTGCAGTACGAAGAAGCGTAC
GACCGATTGTACTACGAGCTCAACAAGCATGGAGGGCTTGAGTGTCTTCG
CGAAATCGCTCCGGCGCGGCTGAAGGACCTTCTCCAGCCCAAAGTCTTGG
AGCTTCAGGACTGCAATGAGGACGTTCGATTTGCAGCACAGTTGGAGTTC
TATCTTGCGGACGCCGAGCTTGCAAAGAACCGTTTGGACGAGCTCGTGGC
AGATATAGCGAAACACACGGGGGAGTGCGAGGTTCACTGCGCGGAGGTCA
AGTCACGAGCAAGCACGCAACGAAAGGCCAGCAAGTCATATGGTGGGGAC
GTTCGAAAGGTTGCTGACATGGCGAGGGTAAGCGTGATCTGTGACAACCC
GGAGGCCTTGAAACGGGCGTACTTGGCTATCGTAGAGTCGTTCCAGGGAG
ACGTTCTTCGGGTGGCAAACGGCTTCAACTCCGACTGGATGCCAAGCGGT
TATCGGGACGTGAAAGTAAATCCCGTCGTCGACGAGCACCTTTGCGAGAT
TCAGCTGCACCTCCGTGAGTTCTTCACACTGAAAGGCGGTCAACACGCCG
TGTACGAGTGGGCGCGGGACCTCAAAGTGACCACGATAATGCGCGCCGAA
AACCTGTTCGAGTTTCTATCCCGTGAGATTACGGAGGAGATGATCGGCTT
GGCTGAACGGAACTGGCATGGGACCGGGCGCTTCCTTCCGCGTCTGCAGC
TCGCTGCTGGGCAGTACGACCAGGCCGAGGAGGGTTTTAGACAGGTTTGC
TTTGGATCAGTAGCCCCATATGTGTGTATAGGTTCTTGA

protein sequence of EsuBft1397_4a-0001

>EsuBft1397_4 ID=EsuBft1397_4|Name=EsuBft1397_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=312bp
MSVDIAELLRLEAELENSCEDCRNPYDRDAKLNLLKFLQIRAVLQYEEAY
DRLYYELNKHGGLECLREIAPARLKDLLQPKVLELQDCNEDVRFAAQLEF
YLADAELAKNRLDELVADIAKHTGECEVHCAEVKSRASTQRKASKSYGGD
VRKVADMARVSVICDNPEALKRAYLAIVESFQGDVLRVANGFNSDWMPSG
YRDVKVNPVVDEHLCEIQLHLREFFTLKGGQHAVYEWARDLKVTTIMRAE
NLFEFLSREITEEMIGLAERNWHGTGRFLPRLQLAAGQYDQAEEGFRQVC
FGSVAPYVCIGS

mRNA from alignment at Scaffold_68:6455..9049+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1397_4a-0001 ID=EsuBft1397_4a-0001|Name=EsuBft1397_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2595bp|location=Sequence derived from alignment at Scaffold_68:6455..9049+ (Ectocarpus subulatus male Bft15b)
ATGAGCGTCGACATCGCGGAGCTTCTCCGCCTGGAGGCAGAGCTGGAGAA
CTCATGTGAAGATTGCCGAAACCCATACGATCGAGACGCCAAGCTGAATT
TGCTCAAGTTTCTTCAAATCAGGGCGGTACTGCAGTACGAAGAAGCGTAC
GACCGATTGTACTACGAGCTCAACAAGCATGGAGGGCTTGAGTGTCTTCG
CGAAATCGCTCCGGCGCGGCTGAAGGACCTTCTCCAGCCCAAAGTCTTGG
AGCTTCAGGACTGCAATGAGGACGTTCGATTTGCAGCACAGTTGGAGTTC
TATCTTGCGGACGCCGAGCTTGCAAAGAACCGTTTGGACGAGCTCGTGGC
AGATATAGCGAAACACACGGGGGAGTGCGAGGTTCACTGCGCGGAGGTCA
AGTCACGAGCAAGCACGCAACGAAAGGCCAGCAAGTCATATGGTGGGGAC
GTTCGAAAGGTTGCTGACATGGCGAGGGTAAGCGTGATCTGTGACAACCC
GGAGGCCTTGAAACGGGCGTACTTGGCTATCGTAGAGTCGTTCCAGGTGA
GGAGATTTCGCAGTTTGCAAACGACCCGCAATTCTGCAAGTGGTGTCTTA
CAAGTCCGCCCCGGTTACTTACTGTTTTTTTGTTTTGTTTCTCCCCGGTT
ACCTACTGGTTTTTTATTTTGGTTCTTGAGCAAACTTCGGTCGGCGTTTG
TGAGTCTGCCATTTGGTTTGATCTTAGTGGGTGAAGCACCTGCGGAAAAT
CGGGAAGGCCCAAATTTCCTTCCTTGTTGATTGGAGTAGCTGTCGCAGAC
AGTGCTCTGCGTACAGTCCGGCATCGATGGTTATTATGTCAATGTTGTCA
TATGAAATTTGACAACAAGAAAGGGTCTTCACCTTTTCCCCTCTGCCGAG
AGCCAAGCGCCACTTGAAGCCCGGAAACAAATGCGGATGTCTGCAGGATA
AGACCAAGTACCAAGGTTTTCAAGTGGAAATTGTGTGCACGTGTGATGGA
CGTGGTGGTGCGGTTTGTGTTGGTTTCAGATTCAGTGGTGGACATAAGAC
GTAGCGTCAGGGTTGATGGTTGTAGAGTACAGGTCGGTGTGCGTCCCTGG
GCCGTTGGTCTGGTAAGAATGGGTATGATGGCACCAAAAAGCGCGAGCAT
GACACTCATCGAAATGCACTTGGTGAGAAAAGAAAACATCGACAATAAAT
TCCCGAACGCATACTTTCGGGCATACATTGGTCATCATAAGGAAGCTCAC
GGCCAACGATATTCCTAGCAGCTCTTGATGCTGTCACGTATGAGTATTGT
GGAACGAAAGCGCGGTACCAATCGTCAACATTTACTTGCTATATAGAAGT
ACATAATATACATGTACATAAAAGATTTGGACATTTTTTGTGCTTGGGCA
TTTCTTTCTCTCGCGGCAGCGAGTCTTTTCTCCTGCTCCATTCTCAGGGG
CGCGCAGGAGGCTCCTCGGTACATCACCGCGCACGCCCGGAACTAGGAAG
GTACCCGTGGCACGCGTGGTTGACGCCCAAAGTCGCGAAAACTGGCTCTA
TACCCCGGGAACGCGTTCCGCGAAGACGCAGCCTGGCGAACCAATGCTCG
AACCCATAAAAGAACGACAGAGTAAGAATGGCCCGCACATGTCATCCCGA
TGTCCAGCAGCACCTTTCCCTTTGCTCGTCTACGCTTTGCAGCGGGCACA
GCGATACAGTGCTCTGCAGTAGGCAAGTCTGAGCGCATGCACCAACAGTA
ATGTTGATCATATTGTTTATTTTCTCGCTTATGCCTTTCTTTTTGGTGTT
GTTTCGGATTTCAAAGTATTCCGGTTATCATCATCAATCACTGGAAATCT
GTATTTCGCCGGCAAGTTGTCCGCTCGAGCTGGCTCCAAAATACGTGCGT
GCGCGATGATTTGCACAGAACACGAGCGCTGACGTTGCCCTTTCAGAAGA
ACACACAAGCCTTCTCTAGCATCTCATGTTGCGTCACCCGCCAGAGGCTC
GACACCCACGCCCCGAAGGGAGACCTTGAAAAAGTATATATTTTATATGT
ATGATGTGTGATCCCGCCCGCCTCAAATTCCTTTCATCCTGCGTGGCCTT
GAATTGCCCAGAAAGTACGTGCCCCTGATGTGTTGGATTACAGGAACAGA
TGGCGCGGCTGACTCGTTTCGGCCACCATCTTGAAAATATTCATACATAC
AGGGAGACGTTCTTCGGGTGGCAAACGGCTTCAACTCCGACTGGATGCCA
AGCGGTTATCGGGACGTGAAAGTAAATCCCGTCGTCGACGAGCACCTTTG
CGAGATTCAGCTGCACCTCCGTGAGTTCTTCACACTGAAAGGCGGTCAAC
ACGCCGTGTACGAGTGGGCGCGGGACCTCAAAGTGACCACGATAATGCGC
GCCGAAAACCTGTTCGAGTTTCTATCCCGTGAGATTACGGAGGAGATGAT
CGGCTTGGCTGAACGGAACTGGCATGGGACCGGGCGCTTCCTTCCGCGTC
TGCAGCTCGCTGCTGGGCAGTACGACCAGGCCGAGGAGGGTTTTAGACAG
GTTTGCTTTGGATCAGTAGCCCCATATGTGTGTATAGGTTCTTGA

Coding sequence (CDS) from alignment at Scaffold_68:6455..9049+

>EsuBft1397_4a-0001 ID=EsuBft1397_4a-0001|Name=EsuBft1397_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=939bp|location=Sequence derived from alignment at Scaffold_68:6455..9049+ (Ectocarpus subulatus male Bft15b)
ATGAGCGTCGACATCGCGGAGCTTCTCCGCCTGGAGGCAGAGCTGGAGAA
CTCATGTGAAGATTGCCGAAACCCATACGATCGAGACGCCAAGCTGAATT
TGCTCAAGTTTCTTCAAATCAGGGCGGTACTGCAGTACGAAGAAGCGTAC
GACCGATTGTACTACGAGCTCAACAAGCATGGAGGGCTTGAGTGTCTTCG
CGAAATCGCTCCGGCGCGGCTGAAGGACCTTCTCCAGCCCAAAGTCTTGG
AGCTTCAGGACTGCAATGAGGACGTTCGATTTGCAGCACAGTTGGAGTTC
TATCTTGCGGACGCCGAGCTTGCAAAGAACCGTTTGGACGAGCTCGTGGC
AGATATAGCGAAACACACGGGGGAGTGCGAGGTTCACTGCGCGGAGGTCA
AGTCACGAGCAAGCACGCAACGAAAGGCCAGCAAGTCATATGGTGGGGAC
GTTCGAAAGGTTGCTGACATGGCGAGGGTAAGCGTGATCTGTGACAACCC
GGAGGCCTTGAAACGGGCGTACTTGGCTATCGTAGAGTCGTTCCAGGGAG
ACGTTCTTCGGGTGGCAAACGGCTTCAACTCCGACTGGATGCCAAGCGGT
TATCGGGACGTGAAAGTAAATCCCGTCGTCGACGAGCACCTTTGCGAGAT
TCAGCTGCACCTCCGTGAGTTCTTCACACTGAAAGGCGGTCAACACGCCG
TGTACGAGTGGGCGCGGGACCTCAAAGTGACCACGATAATGCGCGCCGAA
AACCTGTTCGAGTTTCTATCCCGTGAGATTACGGAGGAGATGATCGGCTT
GGCTGAACGGAACTGGCATGGGACCGGGCGCTTCCTTCCGCGTCTGCAGC
TCGCTGCTGGGCAGTACGACCAGGCCGAGGAGGGTTTTAGACAGGTTTGC
TTTGGATCAGTAGCCCCATATGTGTGTATAGGTTCTTGA