EsuBft90_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft90_2a-0001
Unique Name	EsuBft90_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_65	contig	Scaffold_65:358363..359884 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft90_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	147
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft90_2a	EsuBft90_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_65 358363..359884 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_2a-0001	EsuBft90_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_65 359362..359646 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_2a-0001-exon	EsuBft90_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 358363..358992 -
EsuBft90_2a-0001-exon	agat-exon-75517	Ectocarpus subulatus male Bft15b	exon	Scaffold_65 359042..359884 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_2a-0001-exon	agat-three_prime_utr-22979	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_65 358363..358992 -
EsuBft90_2a-0001-exon	agat-three_prime_utr-22980	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_65 359042..359361 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_2a-0001-cds	EsuBft90_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_65 359362..359646 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft90_2a-0001-exon	agat-five_prime_utr-14924	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_65 359647..359884 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_65:358363..359884-
coding sequence from alignment at Scaffold_65:358363..359884-

spliced messenger RNA

>EsuBft90_2a-0001 ID=EsuBft90_2a-0001|Name=EsuBft90_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1473bp|location=Sequence derived from alignment at Scaffold_65:358363..359884- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCACTCGACCCATGCCCCGTACCATTCGCCTCCTCCCGACGCAGCCGGAT
CCTCTGGGCATCTTCGCTTCCTCAAGACACGTTTTGTGTCACAAGGCGAG
ATCTTTCTAAGTGTGGTAGCAAGTTAGAATAGTAGTGGTTTTGCTTTATC
TGTTCAGAGTCGCCCTTCGCAAATTGGTAGCGAGCAATTTTGGGCCGACA
GCGGCGCAAGCAACACGGTTGTCAGCAGTAGAGAAAATATGTTCGACATG
AAGCCGATCCCAGCAGGAAAACAGTTCATCCAAGTAGGGAATGGTGCCCA
TCTGCGCGTGCAATGTGTTGAAGGCATCAACATGGCATTTCACATGCCTG
GCCCTTCGGGCGAGACCGATTTTTGCGTGCAGATGTCGGACGTGTACGTA
GTCCCCGGCATCACGTTCAATCTGTTTTCTCTGCACCATACGCAGCGTAG
GCAGAGAATTACGTTGGATAAAATGACGTGCATCTCTTTAATGGCAAGCT
TTCCTTTGCTTTCTCCGATGTAGGATTTCTCTTTGAGCCACTCGCTTGCC
TCCCACGTATACCGGTAGTGCTGTAACCCTCGGTCCGGATGCCCTCCCTC
GTGTGTCTCCCGGAGCCCCCCCGCCTAGCGTTGGGACAGGCCTTGTTGTC
GCAAACCCCCCTTTCCCCCCAAACACAGGAGCGGACACACGTGCGAGTAC
GAGCTTCCCGTCCACCGGTGGAGTCGCTGCCGGTGTTGTACCTTCGAGTT
CGAGTGCGAATCCGAGCTTCCAGTGCGTCGGTGGTGCCGCTGCCGGTGTT
GTACCTCCGTGTGCCAGTGCGAGTCCAAGCTTCCAGTCCGCCGCGTACCA
TCCGGTTTAGTGATCCCGCGTTGTGCATTCCCACCCATCGACGTAGATGT
AGTGCCAACGATTATTGCCGACTACCAGCCTGTAATCACAGCTGCCGTGA
AGTCGTCTGGGATTGCTTCTCCCTCCGTCGTTGACCCGAGCGATTTTCGT
GAAGTTGTGATCAACCCCCTCATCCCCCAGGACCATTTTCCTTTCAGGGT
AATGAGCATGTTCCTTGATGTAGGCCTGATGGATGGAATAGACTCGGTCC
CACGGGGTGATTTTTTCCGGATGCGCTTGATGTTTGCGACTCTGCAACAC
CCCCTCCCCCCGCGTTTGCCGTGATGAGTGATGAATTGGATTGCCTGAAG
GGTTTCGTTGCTGGATGCAGTGAGCAGCAAACCGTAGCTCCCCCCTCCCT
CTCGCATGCCTTGGCAATTATCGCCCCCGGGGCTTCCCCGTTGTCGGTAG
GAAAATCCACGCCGACCATTGACATTCATTTGTTCCGTGCCTCCACCGGC
CATGTAAACGAATTTTTATTGAGTGAAACGGCCAAGCAGCAGGGCGTACG
ACTGGTGGGGGAGATGCAGCCATGTGTGGGCTGCGTGGAGGCGAACGGCC
GGTGGGAACCGGTGCCGCGGCGT

protein sequence of EsuBft90_2a-0001

>EsuBft90_2 ID=EsuBft90_2|Name=EsuBft90_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=94bp
MFDMKPIPAGKQFIQVGNGAHLRVQCVEGINMAFHMPGPSGETDFCVQMS
DVYVVPGITFNLFSLHHTQRRQRITLDKMTCISLMASFPLLSPM

mRNA from alignment at Scaffold_65:358363..359884-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft90_2a-0001 ID=EsuBft90_2a-0001|Name=EsuBft90_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1522bp|location=Sequence derived from alignment at Scaffold_65:358363..359884- (Ectocarpus subulatus male Bft15b)
GCACTCGACCCATGCCCCGTACCATTCGCCTCCTCCCGACGCAGCCGGAT
CCTCTGGGCATCTTCGCTTCCTCAAGACACGTTTTGTGTCACAAGGCGAG
ATCTTTCTAAGTGTGGTAGCAAGTTAGAATAGTAGTGGTTTTGCTTTATC
TGTTCAGAGTCGCCCTTCGCAAATTGGTAGCGAGCAATTTTGGGCCGACA
GCGGCGCAAGCAACACGGTTGTCAGCAGTAGAGAAAATATGTTCGACATG
AAGCCGATCCCAGCAGGAAAACAGTTCATCCAAGTAGGGAATGGTGCCCA
TCTGCGCGTGCAATGTGTTGAAGGCATCAACATGGCATTTCACATGCCTG
GCCCTTCGGGCGAGACCGATTTTTGCGTGCAGATGTCGGACGTGTACGTA
GTCCCCGGCATCACGTTCAATCTGTTTTCTCTGCACCATACGCAGCGTAG
GCAGAGAATTACGTTGGATAAAATGACGTGCATCTCTTTAATGGCAAGCT
TTCCTTTGCTTTCTCCGATGTAGGATTTCTCTTTGAGCCACTCGCTTGCC
TCCCACGTATACCGGTAGTGCTGTAACCCTCGGTCCGGATGCCCTCCCTC
GTGTGTCTCCCGGAGCCCCCCCGCCTAGCGTTGGGACAGGCCTTGTTGTC
GCAAACCCCCCTTTCCCCCCAAACACAGGAGCGGACACACGTGCGAGTAC
GAGCTTCCCGTCCACCGGTGGAGTCGCTGCCGGTGTTGTACCTTCGAGTT
CGAGTGCGAATCCGAGCTTCCAGTGCGTCGGTGGTGCCGCTGCCGGTGTT
GTACCTCCGTGTGCCAGTGCGAGTCCAAGCTTCCAGTCCGCCGGTGGATT
CGCTGCCGGTGTTGTACCTTCGTCTGCGAGTGCGACTTCGAGCGTACCAT
CCGGTTTAGTGATCCCGCGTTGTGCATTCCCACCCATCGACGTAGATGTA
GTGCCAACGATTATTGCCGACTACCAGCCTGTAATCACAGCTGCCGTGAA
GTCGTCTGGGATTGCTTCTCCCTCCGTCGTTGACCCGAGCGATTTTCGTG
AAGTTGTGATCAACCCCCTCATCCCCCAGGACCATTTTCCTTTCAGGGTA
ATGAGCATGTTCCTTGATGTAGGCCTGATGGATGGAATAGACTCGGTCCC
ACGGGGTGATTTTTTCCGGATGCGCTTGATGTTTGCGACTCTGCAACACC
CCCTCCCCCCGCGTTTGCCGTGATGAGTGATGAATTGGATTGCCTGAAGG
GTTTCGTTGCTGGATGCAGTGAGCAGCAAACCGTAGCTCCCCCCTCCCTC
TCGCATGCCTTGGCAATTATCGCCCCCGGGGCTTCCCCGTTGTCGGTAGG
AAAATCCACGCCGACCATTGACATTCATTTGTTCCGTGCCTCCACCGGCC
ATGTAAACGAATTTTTATTGAGTGAAACGGCCAAGCAGCAGGGCGTACGA
CTGGTGGGGGAGATGCAGCCATGTGTGGGCTGCGTGGAGGCGAACGGCCG
GTGGGAACCGGTGCCGCGGCGT

Coding sequence (CDS) from alignment at Scaffold_65:358363..359884-

>EsuBft90_2a-0001 ID=EsuBft90_2a-0001|Name=EsuBft90_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=285bp|location=Sequence derived from alignment at Scaffold_65:358363..359884- (Ectocarpus subulatus male Bft15b)
ATGTTCGACATGAAGCCGATCCCAGCAGGAAAACAGTTCATCCAAGTAGG
GAATGGTGCCCATCTGCGCGTGCAATGTGTTGAAGGCATCAACATGGCAT
TTCACATGCCTGGCCCTTCGGGCGAGACCGATTTTTGCGTGCAGATGTCG
GACGTGTACGTAGTCCCCGGCATCACGTTCAATCTGTTTTCTCTGCACCA
TACGCAGCGTAGGCAGAGAATTACGTTGGATAAAATGACGTGCATCTCTT
TAATGGCAAGCTTTCCTTTGCTTTCTCCGATGTAG