EsuBft90_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft90_4a-0001
Unique NameEsuBft90_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_65contigScaffold_65:350306..352097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft90_4
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length114
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft90_4aEsuBft90_4aEctocarpus subulatus male Bft15bgeneScaffold_65 350306..352097 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_4a-0001-exonagat-exon-75521Ectocarpus subulatus male Bft15bexonScaffold_65 350306..351437 -
EsuBft90_4a-0001-exonEsuBft90_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_65 352082..352097 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_4a-0001-exonagat-three_prime_utr-22982Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_65 350306..351042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_4a-0001-cdsEsuBft90_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_65 351043..351437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft90_4a-0001EsuBft90_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_65 351043..352097 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft90_4a-0001 ID=EsuBft90_4a-0001|Name=EsuBft90_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1148bp|location=Sequence derived from alignment at Scaffold_65:350306..352097- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTGGGACAGGAGAGCAGCCCCCAGACCAGTGGTGCCAAATTCA
AGACCAGCTCTACATCGTCAAAAAAAACAACGCCAAAAGTGCCACCGAGA
AGAAAGCAGCCAACGCGGAGAACAAAAAGATACCCGCAGTCTTGGACGGC
GCGGGCGGTGGGGCGGACGAGGGGAAGGCGAAAGACGACGAAGAAGAGGG
TTCTCCGGTCGAGTCCGCGGCCGCGGTGAGGTGGGTGGCCTCCCAGACGG
CCGCGTGGGAAGCTGAGCAAAGAGCCAACGGGGACGTAGCGTCGACGCCG
GCGCCAGACACTCGAGCAGCGAAGCTTGAAGCGAAGATTGGTGCCTTGGG
GCCTGAACCCGCGGCGGATTCGGCTGATCGCCCCAATTGGATGGCGAACG
AGCGGCGTTGACCATGGCGGCTGAAAACCACCCCAGCATTAAGCAGGAGA
AGGGGGAAGAGGAGGGGGAAGCACCAGAGGACGCCGAAGACGACGATAAG
TTGACGAGGCCATCAGGACGGGTTCACAGTTACAGCCTTGTATTCGCGTT
GTTTGGCCGTCCCGCGGGCAAGCATGAGGACGTTGACCTTAAGGTGGCCA
TGTCTACCGGCCCCGGGAAGCAGGGGCGTCGCGCCCAATCTGCGTCGGCG
ACTCCCTCTAGGACGTCGGACGAGGATACAAGCGACACCAGCAACGGCCC
CTTAGGCAAGCGTGGTCTTCAGACGATGGATGGGGCCGGGGGCATCTGTG
GTTTCGCCAGCCGGGAAAAATTAAAAACGAGGTGCATGCTCAGAATTCGA
AGGCGAAGAAGGAGAAGGAAATGCAGGACTGGAGACGCAAGTTGGTGGAG
TTCGCAACAGCCCCCCAACCGGATTCCAAGTCCGCAAGAGAGCTATGTGC
GAGCGTGGCGGTGCTCACCAAGGCGGTCGTGGCCAAAGGGCGTCTCGACG
AGGAGGAGGCGGTGGGTCAGCGTCACAAGCGGACGATAGATGGGAAGGAG
AGGAAGCTCAAGTTGTGGGAGAAGCGGGGCAAGGAAGGGACAGAGGATTA
TTTTGCGCTTGAGGCCGAGCTTGAATATCTGTATTATAACCCGCCCTGTG
CGGCTGTCGAGTCGCTTCCCCCCGTTGACCTCGCTAGCGCCGCAGCCC
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protein sequence of EsuBft90_4a-0001

>EsuBft90_4 ID=EsuBft90_4|Name=EsuBft90_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MTSGTGEQPPDQWCQIQDQLYIVKKNNAKSATEKKAANAENKKIPAVLDG
AGGGADEGKAKDDEEEGSPVESAAAVRWVASQTAAWEAEQRANGDVASTP
APDTRAAKLEAKIGALGPEPAADSADRPNWMANERR
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mRNA from alignment at Scaffold_65:350306..352097-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft90_4a-0001 ID=EsuBft90_4a-0001|Name=EsuBft90_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1792bp|location=Sequence derived from alignment at Scaffold_65:350306..352097- (Ectocarpus subulatus male Bft15b)
ATGACATCTGGGACAGGTGAGTCCTTATTTTCACATTGCTTCGTGCCCCG
CTCTCTTGCGCTGGGCGCATATCCCGAAGCATTTGACGGCACCTTCGCTG
TTTCTTCACTCGGTGTATTTTACCAGCATCAGCCCAGACAGACTGTTTTT
CAGCGCACGGACCCGCTTTTTGTCTAGAACAGAAAGGCTTGTAGGTATGG
GTAAAGGAGACATTGTACACTGCTGTACGACGGGCCAGGGTCTCCCCTCC
TAAATTGCGCTGCGAGTGTGTCACCTACTACATCCCGGTTTCTGATAACC
GAAGCTAGATGCACCGAAAACGAAACCAAAAATATTGCATTACAGTACCT
ATGAGACGATTGCTGTTCGTGTTGACCGAGATGATGTGGTTTTAGACATT
GGGTAACGAGAGAGTAACCACTAGAAGCAAGTCAAGTATCGGCAGGAAGG
AAGCTTTCTGATATCCGAGAGCGCCATGTCTACGTCCGCGTGCACCAATT
CCTCAGCACAGCGATCATGGCCAAAATTCCGTGACACATCTGGAAATGAT
AACGAACTAAGGACATTTCATTCAGACCTTTTCAATTTTTTCTCGGCCAA
TTCCCCTCGACCCTTGTGCGAAACCTAGCCTTTTGGGGCCGGACAAGAAG
CTCCCGTCAGGAGAGCAGCCCCCAGACCAGTGGTGCCAAATTCAAGACCA
GCTCTACATCGTCAAAAAAAACAACGCCAAAAGTGCCACCGAGAAGAAAG
CAGCCAACGCGGAGAACAAAAAGATACCCGCAGTCTTGGACGGCGCGGGC
GGTGGGGCGGACGAGGGGAAGGCGAAAGACGACGAAGAAGAGGGTTCTCC
GGTCGAGTCCGCGGCCGCGGTGAGGTGGGTGGCCTCCCAGACGGCCGCGT
GGGAAGCTGAGCAAAGAGCCAACGGGGACGTAGCGTCGACGCCGGCGCCA
GACACTCGAGCAGCGAAGCTTGAAGCGAAGATTGGTGCCTTGGGGCCTGA
ACCCGCGGCGGATTCGGCTGATCGCCCCAATTGGATGGCGAACGAGCGGC
GTTGACCATGGCGGCTGAAAACCACCCCAGCATTAAGCAGGAGAAGGGGG
AAGAGGAGGGGGAAGCACCAGAGGACGCCGAAGACGACGATAAGTTGACG
AGGCCATCAGGACGGGTTCACAGTTACAGCCTTGTATTCGCGTTGTTTGG
CCGTCCCGCGGGCAAGCATGAGGACGTTGACCTTAAGGTGGCCATGTCTA
CCGGCCCCGGGAAGCAGGGGCGTCGCGCCCAATCTGCGTCGGCGACTCCC
TCTAGGACGTCGGACGAGGATACAAGCGACACCAGCAACGGCCCCTTAGG
CAAGCGTGGTCTTCAGACGATGGATGGGGCCGGGGGCATCTGTGGTTTCG
CCAGCCGGGAAAAATTAAAAACGAGGTGCATGCTCAGAATTCGAAGGCGA
AGAAGGAGAAGGAAATGCAGGACTGGAGACGCAAGTTGGTGGAGTTCGCA
ACAGCCCCCCAACCGGATTCCAAGTCCGCAAGAGAGCTATGTGCGAGCGT
GGCGGTGCTCACCAAGGCGGTCGTGGCCAAAGGGCGTCTCGACGAGGAGG
AGGCGGTGGGTCAGCGTCACAAGCGGACGATAGATGGGAAGGAGAGGAAG
CTCAAGTTGTGGGAGAAGCGGGGCAAGGAAGGGACAGAGGATTATTTTGC
GCTTGAGGCCGAGCTTGAATATCTGTATTATAACCCGCCCTGTGCGGCTG
TCGAGTCGCTTCCCCCCGTTGACCTCGCTAGCGCCGCAGCCC
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Coding sequence (CDS) from alignment at Scaffold_65:350306..352097-

>EsuBft90_4a-0001 ID=EsuBft90_4a-0001|Name=EsuBft90_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_65:350306..352097- (Ectocarpus subulatus male Bft15b)
ATGACATCTGGGACAGGAGAGCAGCCCCCAGACCAGTGGTGCCAAATTCA
AGACCAGCTCTACATCGTCAAAAAAAACAACGCCAAAAGTGCCACCGAGA
AGAAAGCAGCCAACGCGGAGAACAAAAAGATACCCGCAGTCTTGGACGGC
GCGGGCGGTGGGGCGGACGAGGGGAAGGCGAAAGACGACGAAGAAGAGGG
TTCTCCGGTCGAGTCCGCGGCCGCGGTGAGGTGGGTGGCCTCCCAGACGG
CCGCGTGGGAAGCTGAGCAAAGAGCCAACGGGGACGTAGCGTCGACGCCG
GCGCCAGACACTCGAGCAGCGAAGCTTGAAGCGAAGATTGGTGCCTTGGG
GCCTGAACCCGCGGCGGATTCGGCTGATCGCCCCAATTGGATGGCGAACG
AGCGGCGTTGA
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