EsuBft1750_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1750_6a-0001
Unique NameEsuBft1750_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:653019..655895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1750_6
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length177
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_6aEsuBft1750_6aEctocarpus subulatus male Bft15bgeneScaffold_647 653019..655895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_6a-0001EsuBft1750_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 654270..655895 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_6a-0001-exonagat-exon-31414Ectocarpus subulatus male Bft15bexonScaffold_647 653019..653478 -
EsuBft1750_6a-0001-exonEsuBft1750_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 653973..654463 -
EsuBft1750_6a-0001-exonagat-exon-31412Ectocarpus subulatus male Bft15bexonScaffold_647 654608..654698 -
EsuBft1750_6a-0001-exonagat-exon-31411Ectocarpus subulatus male Bft15bexonScaffold_647 654946..655091 -
EsuBft1750_6a-0001-exonagat-exon-31415Ectocarpus subulatus male Bft15bexonScaffold_647 655199..655487 -
EsuBft1750_6a-0001-exonagat-exon-31413Ectocarpus subulatus male Bft15bexonScaffold_647 655596..655895 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_6a-0001-exonagat-three_prime_utr-6150Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 653019..653478 -
EsuBft1750_6a-0001-exonagat-three_prime_utr-6151Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 653973..654269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1750_6a-0001-cdsEsuBft1750_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 654270..654463 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1750_6a-0001 ID=EsuBft1750_6a-0001|Name=EsuBft1750_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1777bp|location=Sequence derived from alignment at Scaffold_647:653019..655895- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACACCACCGCCGCCGACGCAGCCGTAGCTCCCGCCGCCCCCGC
CATCCCCTCCGACATGTTTTTTGCGGAGCTGCACCAGCTTTTTCTGCAGC
AGCGCCAGCAGCAGTGCCAGCAGAGGGAAGAGCGGTACCAGCTACAACAC
CAGCCCGGTCTAGAGCGACGAGACCAGGAGCTGCTCTATCTACAGGAAAA
CGAGGTGCAGCAGCAACACCAGCAGCATCGTCTGGAGAAGCAGCGGCAGC
AAGAGCAGCAGGCGGAGCAAGAGCGTTTTCTGCAGACGAAGCTGCAGAAG
CTGCGACCGAAGGCGGGGGAGGTTTTGTGGAAAACGAGGATGAGCCTGCC
GGTGGAGCCTCGGCCGAAGTCGGAGGGGGCGAGGGTGGAGTCGGAGAGTC
CAAGCCCAAGCAGAGGATGCCGCCGCCGGTGGAGCCTCGGCCGCCGCCGG
AGAGCACGAGGGCGGAGCCGGTCATGCCCAAGCCGAACCAGCGGACCAGG
AGGGGGAGGGCGGGGGGCTGCACGGAGGAGAGGCTCTCGCGGAGGCCCGC
GGCCAGAAGCGTGGTCTACCGGAGGGCTTTTGAAGGTGTGTGGGGCCGGG
ACCGGAGGAGGCTCTGTGGAAATTGGCCCCCCCCAGCCCAAGTCGGAGGG
GGCGAGGGTGGGGTCGGTCAAGCCCGAGCCGAGGATGGGGCGGGCGGTGG
GCAGCATGGAGGAGAGGCTCCCGCTGAGGCCCGTGGCCGAGGAGGGGGCG
GGCGGCGGGCTGCACGGAGGAGGGCTCCTGCGGAGGCCCGCGGCCAGAAT
CGTGATCTACCGGAGGGCTTTTGAAGGTGGGGCCGAGACCGGAGGAGGCT
CTGTGGAAATTGAGAAGGAGGCCACCAGTGGAGCCCCAGCCGAAGTCGGA
GGGGGCGAGGGTGGGTTCGGTCAAGCCCAGGCCGAGGAGGGGGCGGGCGG
CGGGCAGCATGGAGGAGAGGCTCCCGCGGAGGCCCGCGGTCAGAAGCGTA
ACCTACCGGAGGGCTTTTGAAGGCGTGTTTTTGTTTATGTTGTAGCTTTT
ACAGGCAGCTGGCCTTGCCTCCCCGCTCCCGGTTAAGCGGTCGGAAACGC
AGTCTACCAGTGGACTTTTGAAGGTGTGTTTTTGTACGATATCTCATTGC
ACAAACTTAAATCGTAAGGTGGGGCCGGGACCGGAGGAGACTCTGTGGAA
ATGGAGGAGGGGGCGGGCGGCGGGCACATGGCGGAGAGGCTCCCGGGGAG
GCCCGCGGTTAGAAGCATGCTCTACCTGAGGACTTTTGGAGGTGTGTTGT
TGTTTCGACAAATACAGGTGGTGGCTGACTATTTGGCTGACTATTTCAAA
ATGCCTAACACATGAATTAGGGCCTGTGTGTGTGTTTGGTGTCTGTGTGT
GTGTGTGTGTGTGTGTGTGTTTTATCATTAGCATCGACCGCGCTAACCGG
CTGACCAATGAAAAGACGTCGGTCTCAGCGGGTAAAAGTGTGTGTGTGTG
TGCGTGTGTGTGCGTTTACCCCCTTCTATTCTGGCGCCAGTCTGCACAAC
TTTCGGTATATATGTTTGACGTATTCAGCCGGGGTCACACAGGAGTTTTT
TTTTTCCCTCCACTTTCCTTCTTGGTGGCGTGGGTTTTTTCATGGGGTTT
TAGAGGGAAGAGTAAGGACAGCCTGATTCTGGAAGAAACGCGGTGGGGCA
CAACGTTCTGGGCAGGTATTACGCCGTAGAGGATTGTACAGACAACACTC
AATACACAAATCCAGATTCATGAGCGT
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protein sequence of EsuBft1750_6a-0001

>EsuBft1750_6 ID=EsuBft1750_6|Name=EsuBft1750_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=339bp
MEDTTAADAAVAPAAPAIPSDMFFAELHQLFLQQRQQQCQQREERYQLQH
QPGLERRDQELLYLQENEVQQQHQQHRLEKQRQQEQQAEQERFLQTKLQK
LRPKAGEVLWKTRMSLPVEPRPKSEGARVESESPSPSRGCRRRWSLGRRR
RARGRSRSCPSRTSGPGGGGRGAARRRGSRGGPRPEAWSTGGLLKVCGAG
TGGGSVEIGPPQPKSEGARVGSVKPEPRMGRAVGSMEERLPLRPVAEEGA
GGGLHGGGLLRRPAARIVIYRRAFEGGAETGGGSVEIEKEATSGAPAEVG
GGEGGFGQAQAEEGAGGGQHGGEAPAEARGQKRNLPEGF
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mRNA from alignment at Scaffold_647:653019..655895-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1750_6a-0001 ID=EsuBft1750_6a-0001|Name=EsuBft1750_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2877bp|location=Sequence derived from alignment at Scaffold_647:653019..655895- (Ectocarpus subulatus male Bft15b)
ATGGAGGACACCACCGCCGCCGACGCAGCCGTAGCTCCCGCCGCCCCCGC
CATCCCCTCCGACATGTTTTTTGCGGAGCTGCACCAGCTTTTTCTGCAGC
AGCGCCAGCAGCAGTGCCAGCAGAGGGAAGAGCGGTACCAGCTACAACAC
CAGCCCGGTCTAGAGCGACGAGACCAGGAGCTGCTCTATCTACAGGAAAA
CGAGGTGCAGCAGCAACACCAGCAGCATCGTCTGGAGAAGCAGCGGCAGC
AAGAGCAGCAGGCGGAGCAAGAGCGTTTTCTGCAGACGAAGCTGCAGAAG
GTGCGTGGATGATGATCAATTCCCTTTTTGATAGACGTGTAGTTTCTTCC
CGTTGATACCCACAGCTCGTTGACACACTCCCCGAATCTTTCGTCCTCAC
TGTTCAAGCTGCGACCGAAGGCGGGGGAGGTTTTGTGGAAAACGAGGATG
AGCCTGCCGGTGGAGCCTCGGCCGAAGTCGGAGGGGGCGAGGGTGGAGTC
GGAGAGTCCAAGCCCAAGCAGAGGATGCCGCCGCCGGTGGAGCCTCGGCC
GCCGCCGGAGAGCACGAGGGCGGAGCCGGTCATGCCCAAGCCGAACCAGC
GGACCAGGAGGGGGAGGGCGGGGGGCTGCACGGAGGAGAGGCTCTCGCGG
AGGCCCGCGGCCAGAAGCGTGGTCTACCGGAGGGCTTTTGAAGGTGTGTT
TGATGTGTAGTACTGAAGTAGTCTGGCCTCGCTGCCCGCTCCCGGATAAG
CGGTCGGAAACGCAGACTTGTGACGGTGTGTATTTTTACGATATATCATT
GCAGGTGGGGCCGGGACCGGAGGAGGCTCTGTGGAAATTGGCCCCCCCCA
GCCCAAGTCGGAGGGGGCGAGGGTGGGGTCGGTCAAGCCCGAGCCGAGGA
TGGGGCGGGCGGTGGGCAGCATGGAGGAGAGGCTCCCGCTGAGGCCCGTG
GTTAGAAGCGTGGTCTACCGGAGGGCTTTTGAAGGTGTGTTTTTGTTTAT
TTTGAGGCTTCTACAGCCAGCTGGCCTCGCTCCCCGCTCCCGGATAAGCG
GTCGGAAACGCAGTCTACCACCCAACTATTGAAGGTGTTTTTTTACGATA
TATCATTGCACAAACTTAAATTGTAAGGTGGGGCCGGGGCCGGAGGAGGC
TCTGTGGAAATTGAAGAGGCGGCGAGGGTGGGGTTGGTCAAGCCCAGGCC
GAGGAGGGGGCGGGCGGCGGGCTGCACGGAGGAGGGCTCCTGCGGAGGCC
CGCGGCCAGAATCGTGATCTACCGGAGGGCTTTTGAAGGTGTGTTTTGTT
TGATAAATACATGTGTATTTTGTAGCTCTTACAGGCTGCTGGCCTCGCTC
CCCGCTCCAGGATAAGCGGTCGGAAACGCAGTCTACCAGCGGACCTGTGA
CGGTGTGTGTGTCTTACGATATATCATTGCAGGTGGGGCCGAGACCGGAG
GAGGCTCTGTGGAAATTGAGAAGGAGGCCACCAGTGGAGCCCCAGCCGAA
GTCGGAGGGGGCGAGGGTGGGTTCGGTCAAGCCCAGGCCGAGGAGGGGGC
GGGCGGCGGGCAGCATGGAGGAGAGGCTCCCGCGGAGGCCCGCGGTCAGA
AGCGTAACCTACCGGAGGGCTTTTGAAGGCGTGTTTTTGTTTATGTTGTA
GCTTTTACAGGCAGCTGGCCTTGCCTCCCCGCTCCCGGTTAAGCGGTCGG
AAACGCAGTCTACCAGTGGACTTTTGAAGGTGTGTTTTTGTACGATATCT
CATTGCACAAACTTAAATCGTAAGGTGGGGCCGGGACCGGAGGAGACTCT
GTGGAAATGGAGGAGGGGGCGGGCGGCGGGCACATGGCGGAGAGGCTCCC
GGGGAGGCCCGCGGTTAGAAGCATGCTCTACCTGAGGACTTTTGGAGGTG
TGTTGTTGTTTCGACAAATACAGGTTTATATTGTAGCTTCTACAGGCTGC
TGGCCTCGCTCCGCGCTCCCGGATAAGCAGTCGGAAACGCAGTCTACCAC
CGGATTTGTGACGGTGTGTGTTTTTACGATATCTCATTGCACGAACTTCA
ATCGTAATACCCCACCGCCCCCAATATTTCCCGCCGCAGATATATTGCCA
GGCCGGGCTTTCTTCACCCGTTCGTGCGGAGGAAGAAGGGTTGTTCGGCG
TCACCGCTCCCCTCGAGAACAAGGGCGGGAGTGGCACGAGACCTTGGTGG
CAACTGCGCCTGAACGCCAGCTGCATATACTGCAGCGGGGGAAGCACGGG
CGACTAGCTATTTTTTTATGGGGCTTAGGGCCTGCCTGTGGGGGGTTGAA
CGGGGTTATGTGCACGGGCGCCCGGCTATTTGGGCTTAACACATCGTTAT
TTTGGGTATGAAGGCTTGACACATTATTTAGGGCCTGTTTCGTTTCTGTT
CGGGGGTGTACATACAGGTGGTGGCTGACTATTTGGCTGACTATTTCAAA
ATGCCTAACACATGAATTAGGGCCTGTGTGTGTGTTTGGTGTCTGTGTGT
GTGTGTGTGTGTGTGTGTGTTTTATCATTAGCATCGACCGCGCTAACCGG
CTGACCAATGAAAAGACGTCGGTCTCAGCGGGTAAAAGTGTGTGTGTGTG
TGCGTGTGTGTGCGTTTACCCCCTTCTATTCTGGCGCCAGTCTGCACAAC
TTTCGGTATATATGTTTGACGTATTCAGCCGGGGTCACACAGGAGTTTTT
TTTTTCCCTCCACTTTCCTTCTTGGTGGCGTGGGTTTTTTCATGGGGTTT
TAGAGGGAAGAGTAAGGACAGCCTGATTCTGGAAGAAACGCGGTGGGGCA
CAACGTTCTGGGCAGGTATTACGCCGTAGAGGATTGTACAGACAACACTC
AATACACAAATCCAGATTCATGAGCGT
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Coding sequence (CDS) from alignment at Scaffold_647:653019..655895-

>EsuBft1750_6a-0001 ID=EsuBft1750_6a-0001|Name=EsuBft1750_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1020bp|location=Sequence derived from alignment at Scaffold_647:653019..655895- (Ectocarpus subulatus male Bft15b)
ATGGAGGACACCACCGCCGCCGACGCAGCCGTAGCTCCCGCCGCCCCCGC
CATCCCCTCCGACATGTTTTTTGCGGAGCTGCACCAGCTTTTTCTGCAGC
AGCGCCAGCAGCAGTGCCAGCAGAGGGAAGAGCGGTACCAGCTACAACAC
CAGCCCGGTCTAGAGCGACGAGACCAGGAGCTGCTCTATCTACAGGAAAA
CGAGGTGCAGCAGCAACACCAGCAGCATCGTCTGGAGAAGCAGCGGCAGC
AAGAGCAGCAGGCGGAGCAAGAGCGTTTTCTGCAGACGAAGCTGCAGAAG
CTGCGACCGAAGGCGGGGGAGGTTTTGTGGAAAACGAGGATGAGCCTGCC
GGTGGAGCCTCGGCCGAAGTCGGAGGGGGCGAGGGTGGAGTCGGAGAGTC
CAAGCCCAAGCAGAGGATGCCGCCGCCGGTGGAGCCTCGGCCGCCGCCGG
AGAGCACGAGGGCGGAGCCGGTCATGCCCAAGCCGAACCAGCGGACCAGG
AGGGGGAGGGCGGGGGGCTGCACGGAGGAGAGGCTCTCGCGGAGGCCCGC
GGCCAGAAGCGTGGTCTACCGGAGGGCTTTTGAAGGTGTGTGGGGCCGGG
ACCGGAGGAGGCTCTGTGGAAATTGGCCCCCCCCAGCCCAAGTCGGAGGG
GGCGAGGGTGGGGTCGGTCAAGCCCGAGCCGAGGATGGGGCGGGCGGTGG
GCAGCATGGAGGAGAGGCTCCCGCTGAGGCCCGTGGCCGAGGAGGGGGCG
GGCGGCGGGCTGCACGGAGGAGGGCTCCTGCGGAGGCCCGCGGCCAGAAT
CGTGATCTACCGGAGGGCTTTTGAAGGTGGGGCCGAGACCGGAGGAGGCT
CTGTGGAAATTGAGAAGGAGGCCACCAGTGGAGCCCCAGCCGAAGTCGGA
GGGGGCGAGGGTGGGTTCGGTCAAGCCCAGGCCGAGGAGGGGGCGGGCGG
CGGGCAGCATGGAGGAGAGGCTCCCGCGGAGGCCCGCGGTCAGAAGCGTA
ACCTACCGGAGGGCTTTTGA
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