EsuBft262_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft262_8a-0001
Unique Name	EsuBft262_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_647	contig	Scaffold_647:492222..493325 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft262_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	110
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft262_8a	EsuBft262_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_647 492222..493325 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft262_8a-0001-exon	EsuBft262_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 492222..493325 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft262_8a-0001-cds	EsuBft262_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_647 492222..493325 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft262_8a-0001	EsuBft262_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_647 492222..493325 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_647:492222..493325+
coding sequence from alignment at Scaffold_647:492222..493325+

spliced messenger RNA

>EsuBft262_8a-0001 ID=EsuBft262_8a-0001|Name=EsuBft262_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1104bp|location=Sequence derived from alignment at Scaffold_647:492222..493325+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACGAAAATAAGCCGGGCGGGGGGGGCACCTTCAAAGAGACGGAG
CCGCGAGACCGCCACCGGCAGGGGGGCGTCGATAGGGACCGCCCCGCAGA
GACCGCCGGACGCGGCGCCAAGCCCCGGCCCGTCGTCGTACCGCCCCGCC
ACCCTCGACGAGACCGCTCGCGACGGCAAGGTCGTCAGCATCGGCGGCAG
ATCGAAGCGGGAGCTATTCCCGCCCTCGCCAGAAACGCCGGGGCCCGAGC
AGTACGCCCCCGAGGTGATCCAGGGCAGCCCGGCTGCTGCTGCTGCTCAA
GAGCCGCCAAGACGAGTAGCACCACCAGGACGGGCGGCTGCCGCAGGCGC
TCCTTCGAGCCGAGAGAACGCGCCCCCGCCGCGTTCGACGAACCCCAAGC
CAAGCAGCAGCAGGCGGCGACCACTGCGGTCAACCTCCAGCCCGACGAAC
GCACCCGGGGCGTCGCCCGCGGCGGCATCCCTAGTAGCAGCGGCCGCCGG
CACTTTCGGGTCTTCCGAGCGGTTTCCCAGGGACGCGGCCCTGAGGCCTG
GCGTCGGGGACTACGACCTAAGGGCAGCCGAGGCCGCCGCCTGCGGCTCG
TCGACGGCCGTCCCCCCGACGCTCGGGCGCAAGCCCACGGGGGCCCCGTA
CGACCCCGCTCTCAGCCGCTACCTCTTCCGCGACGACGGCCGCGTCACCC
CCAGCTCCCACGCCTACCGCCCGGAGTCCGCCAGGGGGGGCGGCGGCGAC
GGCGGATTGGCCGGCCACGCGTCGGCGCCGCCGGGGTGGTCGTTCGGAGG
CAAGCGGCCGGCTCCCAGACCCCCGGACGGCCCCGGACCGGGCAAGTTCA
GGCCTCCTTACAACAACGAGAGCGATCCCTGCTGCTCGTCTTCTCCGGCC
AGGGTGAGGTTTGGGGTCGGACGAGAGGACATTTCCGGTAGCGTTTCAGG
GGTACCGTGGGTGGAGGCGGAGGAGAGGGCGGCGCGGGGGGAGGCGGGCG
GCCGGAGCGCGAGGCTTTACCTCCCCGAAAGGGACCGCATGGGCTCGAGA
GTGTTCATGCGCTCGAGGCGATTGCCAAGGCCAGGGACCCGAGGGCCTCG
ATAG

protein sequence of EsuBft262_8a-0001

>EsuBft262_8 ID=EsuBft262_8|Name=EsuBft262_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=367bp
MSTKISRAGGAPSKRRSRETATGRGASIGTAPQRPPDAAPSPGPSSYRPA
TLDETARDGKVVSIGGRSKRELFPPSPETPGPEQYAPEVIQGSPAAAAAQ
EPPRRVAPPGRAAAAGAPSSRENAPPPRSTNPKPSSSRRRPLRSTSSPTN
APGASPAAASLVAAAAGTFGSSERFPRDAALRPGVGDYDLRAAEAAACGS
STAVPPTLGRKPTGAPYDPALSRYLFRDDGRVTPSSHAYRPESARGGGGD
GGLAGHASAPPGWSFGGKRPAPRPPDGPGPGKFRPPYNNESDPCCSSSPA
RVRFGVGREDISGSVSGVPWVEAEERAARGEAGGRSARLYLPERDRMGSR
VFMRSRRLPRPGTRGPR

mRNA from alignment at Scaffold_647:492222..493325+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft262_8a-0001 ID=EsuBft262_8a-0001|Name=EsuBft262_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1104bp|location=Sequence derived from alignment at Scaffold_647:492222..493325+ (Ectocarpus subulatus male Bft15b)
ATGTCTACGAAAATAAGCCGGGCGGGGGGGGCACCTTCAAAGAGACGGAG
CCGCGAGACCGCCACCGGCAGGGGGGCGTCGATAGGGACCGCCCCGCAGA
GACCGCCGGACGCGGCGCCAAGCCCCGGCCCGTCGTCGTACCGCCCCGCC
ACCCTCGACGAGACCGCTCGCGACGGCAAGGTCGTCAGCATCGGCGGCAG
ATCGAAGCGGGAGCTATTCCCGCCCTCGCCAGAAACGCCGGGGCCCGAGC
AGTACGCCCCCGAGGTGATCCAGGGCAGCCCGGCTGCTGCTGCTGCTCAA
GAGCCGCCAAGACGAGTAGCACCACCAGGACGGGCGGCTGCCGCAGGCGC
TCCTTCGAGCCGAGAGAACGCGCCCCCGCCGCGTTCGACGAACCCCAAGC
CAAGCAGCAGCAGGCGGCGACCACTGCGGTCAACCTCCAGCCCGACGAAC
GCACCCGGGGCGTCGCCCGCGGCGGCATCCCTAGTAGCAGCGGCCGCCGG
CACTTTCGGGTCTTCCGAGCGGTTTCCCAGGGACGCGGCCCTGAGGCCTG
GCGTCGGGGACTACGACCTAAGGGCAGCCGAGGCCGCCGCCTGCGGCTCG
TCGACGGCCGTCCCCCCGACGCTCGGGCGCAAGCCCACGGGGGCCCCGTA
CGACCCCGCTCTCAGCCGCTACCTCTTCCGCGACGACGGCCGCGTCACCC
CCAGCTCCCACGCCTACCGCCCGGAGTCCGCCAGGGGGGGCGGCGGCGAC
GGCGGATTGGCCGGCCACGCGTCGGCGCCGCCGGGGTGGTCGTTCGGAGG
CAAGCGGCCGGCTCCCAGACCCCCGGACGGCCCCGGACCGGGCAAGTTCA
GGCCTCCTTACAACAACGAGAGCGATCCCTGCTGCTCGTCTTCTCCGGCC
AGGGTGAGGTTTGGGGTCGGACGAGAGGACATTTCCGGTAGCGTTTCAGG
GGTACCGTGGGTGGAGGCGGAGGAGAGGGCGGCGCGGGGGGAGGCGGGCG
GCCGGAGCGCGAGGCTTTACCTCCCCGAAAGGGACCGCATGGGCTCGAGA
GTGTTCATGCGCTCGAGGCGATTGCCAAGGCCAGGGACCCGAGGGCCTCG
ATAG

Coding sequence (CDS) from alignment at Scaffold_647:492222..493325+

>EsuBft262_8a-0001 ID=EsuBft262_8a-0001|Name=EsuBft262_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1104bp|location=Sequence derived from alignment at Scaffold_647:492222..493325+ (Ectocarpus subulatus male Bft15b)
ATGTCTACGAAAATAAGCCGGGCGGGGGGGGCACCTTCAAAGAGACGGAG
CCGCGAGACCGCCACCGGCAGGGGGGCGTCGATAGGGACCGCCCCGCAGA
GACCGCCGGACGCGGCGCCAAGCCCCGGCCCGTCGTCGTACCGCCCCGCC
ACCCTCGACGAGACCGCTCGCGACGGCAAGGTCGTCAGCATCGGCGGCAG
ATCGAAGCGGGAGCTATTCCCGCCCTCGCCAGAAACGCCGGGGCCCGAGC
AGTACGCCCCCGAGGTGATCCAGGGCAGCCCGGCTGCTGCTGCTGCTCAA
GAGCCGCCAAGACGAGTAGCACCACCAGGACGGGCGGCTGCCGCAGGCGC
TCCTTCGAGCCGAGAGAACGCGCCCCCGCCGCGTTCGACGAACCCCAAGC
CAAGCAGCAGCAGGCGGCGACCACTGCGGTCAACCTCCAGCCCGACGAAC
GCACCCGGGGCGTCGCCCGCGGCGGCATCCCTAGTAGCAGCGGCCGCCGG
CACTTTCGGGTCTTCCGAGCGGTTTCCCAGGGACGCGGCCCTGAGGCCTG
GCGTCGGGGACTACGACCTAAGGGCAGCCGAGGCCGCCGCCTGCGGCTCG
TCGACGGCCGTCCCCCCGACGCTCGGGCGCAAGCCCACGGGGGCCCCGTA
CGACCCCGCTCTCAGCCGCTACCTCTTCCGCGACGACGGCCGCGTCACCC
CCAGCTCCCACGCCTACCGCCCGGAGTCCGCCAGGGGGGGCGGCGGCGAC
GGCGGATTGGCCGGCCACGCGTCGGCGCCGCCGGGGTGGTCGTTCGGAGG
CAAGCGGCCGGCTCCCAGACCCCCGGACGGCCCCGGACCGGGCAAGTTCA
GGCCTCCTTACAACAACGAGAGCGATCCCTGCTGCTCGTCTTCTCCGGCC
AGGGTGAGGTTTGGGGTCGGACGAGAGGACATTTCCGGTAGCGTTTCAGG
GGTACCGTGGGTGGAGGCGGAGGAGAGGGCGGCGCGGGGGGAGGCGGGCG
GCCGGAGCGCGAGGCTTTACCTCCCCGAAAGGGACCGCATGGGCTCGAGA
GTGTTCATGCGCTCGAGGCGATTGCCAAGGCCAGGGACCCGAGGGCCTCG
ATAG