EsuBft1285_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1285_6a-0001
Unique Name	EsuBft1285_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_647	contig	Scaffold_647:301059..302203 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4081.Solyc09g056150.1.1
ProteomeId	EsuBft1285_6
Protein domains	IPR012337
Protein domains	IPR001584
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	1145
Hectar predicted targeting category	other localisation
Evalue	4.33e-20
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,44UC5@71274\|asterids
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Mitochondrial protein
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_6a	EsuBft1285_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_647 301059..302203 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_6a-0001-exon	EsuBft1285_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 301059..302203 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_6a-0001-exon	agat-three_prime_utr-2665	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_647 301059..301148 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_6a-0001-cds	EsuBft1285_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_647 301149..302153 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_6a-0001-exon	agat-five_prime_utr-1774	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_647 302154..302203 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1285_6a-0001	EsuBft1285_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_647 301149..302153 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_647:301059..302203-
coding sequence from alignment at Scaffold_647:301059..302203-

spliced messenger RNA

>EsuBft1285_6a-0001 ID=EsuBft1285_6a-0001|Name=EsuBft1285_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1145bp|location=Sequence derived from alignment at Scaffold_647:301059..302203- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTCCCGTGAGAGTTCTTTTTCCTTTGTGGCATCGGCTCTTACAGCCGCG
ATGGGTTCCGATCTAGATCCCCCCCGTGTGACGGATGCTGTAGCAGAACA
CTCGGCGAAGATGATTGATGTGTGGGAGAGTGAAGAGTGTGAACGCGCCA
TGGCTGTGTTGGGTCCAGGGAAGACACCATTCAATGTCGGCAATGCACAA
AAGGTCATGGATATTAACACGTTCCACTCCCGTGCCGGCCACTTGTCCGA
ACCCATTTTGAGGCTGTCCGCAAAGCAGCACGGGATTACCCTCACGAGCA
CGATGGACAGTTGCCGCTGGTGCTTGCCGGCGCGTGGGATGAGGGCACCG
GTGCCGAAGCAGGGGGGCGGGTACCGCGGCAAGAGGGCGCCAAACGACGT
GTTCCACATCGACCTCTGCGGCGCGTACACGGCGACGATCGGCGGCAACC
ACTACATGCTCTTCGGTGTGGACGCCGCAACGGGATGGATGGCCTGCTAC
GCCATGCGGCGTAAGTCGGAGGCGCTGGCGGTCGTCAAGCGCATGGTCGT
GGATGCCGCCCACAAGGCTGGTACCGCGATCAAGTGCATCCGCTGCGACT
GCGATGCTCTCTGGACCAGCAGCGACTTCAAAGAGTTCTGTGCCAGCATG
GGGATCGCGCTCGAGTACTCCCCTCCCGGCGTGCAGCAGTACAACGGCGT
CGTCAAGAGCGCCATCCAGAGGTGCCTCAAGGTGGCCAAGGCATCCCGCC
GGGCCGCCCGGGAGCTGCTTGGCCCCGCAGGATTTTCTCGTGTCAGCGGG
CTGAGCGTTCGTGGCGATGAGCTCTGGGGGGAGTCCGCAAAAGACGCCGC
GCAGAGACTGAACCACTCAGCATCTCCTTTCAACCCCGGGGGTGCGTCGC
CGCAGGAACTTTACACCGGCAAGGGAGGCCCTTTTCGCTTGATCCCGTTC
TTCCAGTACGGTTTCATGTGGGAGCGGCCGGCAACGAAAATGGACGACAG
GGCCGTGCCGTGTTTTTTCCTCAACGCCGGGGACAACCACGCCGACGTCA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft1285_6a-0001

>EsuBft1285_6 ID=EsuBft1285_6|Name=EsuBft1285_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=335bp
MGSDLDPPRVTDAVAEHSAKMIDVWESEECERAMAVLGPGKTPFNVGNAQ
KVMDINTFHSRAGHLSEPILRLSAKQHGITLTSTMDSCRWCLPARGMRAP
VPKQGGGYRGKRAPNDVFHIDLCGAYTATIGGNHYMLFGVDAATGWMACY
AMRRKSEALAVVKRMVVDAAHKAGTAIKCIRCDCDALWTSSDFKEFCASM
GIALEYSPPGVQQYNGVVKSAIQRCLKVAKASRRAARELLGPAGFSRVSG
LSVRGDELWGESAKDAAQRLNHSASPFNPGGASPQELYTGKGGPFRLIPF
FQYGFMWERPATKMDDRAVPCFFLNAGDNHADVTX

mRNA from alignment at Scaffold_647:301059..302203-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1285_6a-0001 ID=EsuBft1285_6a-0001|Name=EsuBft1285_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1145bp|location=Sequence derived from alignment at Scaffold_647:301059..302203- (Ectocarpus subulatus male Bft15b)
GTTCCCGTGAGAGTTCTTTTTCCTTTGTGGCATCGGCTCTTACAGCCGCG
ATGGGTTCCGATCTAGATCCCCCCCGTGTGACGGATGCTGTAGCAGAACA
CTCGGCGAAGATGATTGATGTGTGGGAGAGTGAAGAGTGTGAACGCGCCA
TGGCTGTGTTGGGTCCAGGGAAGACACCATTCAATGTCGGCAATGCACAA
AAGGTCATGGATATTAACACGTTCCACTCCCGTGCCGGCCACTTGTCCGA
ACCCATTTTGAGGCTGTCCGCAAAGCAGCACGGGATTACCCTCACGAGCA
CGATGGACAGTTGCCGCTGGTGCTTGCCGGCGCGTGGGATGAGGGCACCG
GTGCCGAAGCAGGGGGGCGGGTACCGCGGCAAGAGGGCGCCAAACGACGT
GTTCCACATCGACCTCTGCGGCGCGTACACGGCGACGATCGGCGGCAACC
ACTACATGCTCTTCGGTGTGGACGCCGCAACGGGATGGATGGCCTGCTAC
GCCATGCGGCGTAAGTCGGAGGCGCTGGCGGTCGTCAAGCGCATGGTCGT
GGATGCCGCCCACAAGGCTGGTACCGCGATCAAGTGCATCCGCTGCGACT
GCGATGCTCTCTGGACCAGCAGCGACTTCAAAGAGTTCTGTGCCAGCATG
GGGATCGCGCTCGAGTACTCCCCTCCCGGCGTGCAGCAGTACAACGGCGT
CGTCAAGAGCGCCATCCAGAGGTGCCTCAAGGTGGCCAAGGCATCCCGCC
GGGCCGCCCGGGAGCTGCTTGGCCCCGCAGGATTTTCTCGTGTCAGCGGG
CTGAGCGTTCGTGGCGATGAGCTCTGGGGGGAGTCCGCAAAAGACGCCGC
GCAGAGACTGAACCACTCAGCATCTCCTTTCAACCCCGGGGGTGCGTCGC
CGCAGGAACTTTACACCGGCAAGGGAGGCCCTTTTCGCTTGATCCCGTTC
TTCCAGTACGGTTTCATGTGGGAGCGGCCGGCAACGAAAATGGACGACAG
GGCCGTGCCGTGTTTTTTCCTCAACGCCGGGGACAACCACGCCGACGTCA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_647:301059..302203-

>EsuBft1285_6a-0001 ID=EsuBft1285_6a-0001|Name=EsuBft1285_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1005bp|location=Sequence derived from alignment at Scaffold_647:301059..302203- (Ectocarpus subulatus male Bft15b)
ATGGGTTCCGATCTAGATCCCCCCCGTGTGACGGATGCTGTAGCAGAACA
CTCGGCGAAGATGATTGATGTGTGGGAGAGTGAAGAGTGTGAACGCGCCA
TGGCTGTGTTGGGTCCAGGGAAGACACCATTCAATGTCGGCAATGCACAA
AAGGTCATGGATATTAACACGTTCCACTCCCGTGCCGGCCACTTGTCCGA
ACCCATTTTGAGGCTGTCCGCAAAGCAGCACGGGATTACCCTCACGAGCA
CGATGGACAGTTGCCGCTGGTGCTTGCCGGCGCGTGGGATGAGGGCACCG
GTGCCGAAGCAGGGGGGCGGGTACCGCGGCAAGAGGGCGCCAAACGACGT
GTTCCACATCGACCTCTGCGGCGCGTACACGGCGACGATCGGCGGCAACC
ACTACATGCTCTTCGGTGTGGACGCCGCAACGGGATGGATGGCCTGCTAC
GCCATGCGGCGTAAGTCGGAGGCGCTGGCGGTCGTCAAGCGCATGGTCGT
GGATGCCGCCCACAAGGCTGGTACCGCGATCAAGTGCATCCGCTGCGACT
GCGATGCTCTCTGGACCAGCAGCGACTTCAAAGAGTTCTGTGCCAGCATG
GGGATCGCGCTCGAGTACTCCCCTCCCGGCGTGCAGCAGTACAACGGCGT
CGTCAAGAGCGCCATCCAGAGGTGCCTCAAGGTGGCCAAGGCATCCCGCC
GGGCCGCCCGGGAGCTGCTTGGCCCCGCAGGATTTTCTCGTGTCAGCGGG
CTGAGCGTTCGTGGCGATGAGCTCTGGGGGGAGTCCGCAAAAGACGCCGC
GCAGAGACTGAACCACTCAGCATCTCCTTTCAACCCCGGGGGTGCGTCGC
CGCAGGAACTTTACACCGGCAAGGGAGGCCCTTTTCGCTTGATCCCGTTC
TTCCAGTACGGTTTCATGTGGGAGCGGCCGGCAACGAAAATGGACGACAG
GGCCGTGCCGTGTTTTTTCCTCAACGCCGGGGACAACCACGCCGACGTCA
CNNNN