EsuBft785_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft785_9a-0001
Unique NameEsuBft785_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:76347..80596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft785_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length376
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft785_9aEsuBft785_9aEctocarpus subulatus male Bft15bgeneScaffold_647 76347..80596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_9a-0001EsuBft785_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 80143..80484 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_9a-0001-exonEsuBft785_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 76347..78386 -
EsuBft785_9a-0001-exonagat-exon-102404Ectocarpus subulatus male Bft15bexonScaffold_647 78701..79720 -
EsuBft785_9a-0001-exonagat-exon-102405Ectocarpus subulatus male Bft15bexonScaffold_647 79891..80596 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_9a-0001-exonagat-three_prime_utr-21468Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 76347..78386 -
EsuBft785_9a-0001-exonagat-three_prime_utr-21469Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 78701..79720 -
EsuBft785_9a-0001-exonagat-three_prime_utr-21470Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 79891..80142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_9a-0001-cdsEsuBft785_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 80143..80484 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft785_9a-0001-exonagat-five_prime_utr-13840Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_647 80485..80596 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft785_9a-0001 ID=EsuBft785_9a-0001|Name=EsuBft785_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3766bp|location=Sequence derived from alignment at Scaffold_647:76347..80596- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTTCTGGTTGGCCTATACTCCCCGAGATACTCCCGACGTTGTCCGGACA
CATGCCGCACCAGCCCGTGAGGCTAGCTATGCACCCACACCTCGGCCGTG
ATACACACTACCATGGCGAGCCAGCTACAGTACCGCAAGACAGTTAGACA
GTCGTCACTGCACGCCAGACCCGGTGCAATGCATGCTGCCGATATGGTGC
ATTTGCGCCCTTTGAACCGCAGCATACCGTTCTACATGCTAATCTTGAGT
GACACACCAAGTCGGCGTGACGAGGATGACGGCGATGCTGCGAGCGGCAT
AGATCTTAGGAGTGCTGCACAAGCGGAGGCGGAGGTGACGGGGTTAGGGA
TGCTTCAAGCGGCGTGGGAGCGTGAGGAGCTGCTGCGCGTGCGTCCTGTG
GACCGTGCTCCGGTGATGCGTCTGTCGCGGACGATCGACTCCGTTGATGA
CTGAGACGCGTATCACTAAACCGCGGGGCAGCGCTAGTAGGAGGAGGAGG
TCCTTGGCCTTCGTGCTGTGTGTTCACCGAAACTCTGGCGAGGGGAGCGG
CCCTCGCCGGAGGACTCGTGTTGCCATGAACACCCGGCAACTGAACCGGG
CCAGCCTTCTCATGAGTACGTTGACCTCCATCGTTCTCCATGATTGTTTA
GCAGCGGTTGTGAGTGTAATGTGGTGGTAGCCTTGCGGTGGGGGTGGAGG
CGAAAGGTGGACGAAGGACAACGGGGAGGTCGTCCCCTATACCCCAACCA
CCACCAACTGCCACGCCAAGAAGGCCGTTTACGAGTTGATGCGCTATGTG
GGCAGCGTGGCCATTTCGGACAAAGATGTCCAAAGTGAGCGAACATGGTA
GTCCTGGGAGCAACATTTTTTTTCCTTGTGCGTTCAAACATGTCACGAGC
CCGGCAGCCGATGTCAGGTGTACCCGCTCGACTGCAAGTCCCTGCGCGTT
CGTATGTTGACTCGTCTGCATTTCATAGAGCCACAAAGTGTTGAGGACGT
TGCGCTAGAGTGCCATCATTGATTTGCAACGCGAGGTGAGCACCCGCGGA
TGGCGTTTTGTATAAGTCTCCCAAGAAAGTGACCATAAAACATATGTCCG
GTCAATCACCAGCCGCGTGTAGCATGGCCGAAATTTCAGTTGTAAATTAA
TATGACAACGTTCGGCGTGTGATTGTTTCCATTCCGTCATAACACGCACA
CCGCTTCTGCCTGCCCGCCTCACGCCTGCATGCGTACGACTGCTTCCTGT
GCCTTCCTCCATGTCTGCTTTATATACGTTCGGCCTGTCCTTGTGGGACT
TGGGAAGTGACGTGGCGGTTTCTTGGACAAGATCCAGGAGGGCAACCCGT
GTGGCTTCCCTCGTCCACTTCACGTGCTCTGCGCGGCGAGCAGTACGGCC
GCCGGCAATCATGGCGGTTCGTCATGAGCATGTTCCCGATGGCGAGACCG
ACGAAGGCTTCGATGAGATGCTTAAGACAGTCGAGTGGCAAGTAAACTGT
GTGCTGGTGGAAAAGGGCAAGAGCGTCTACGAGCACGCCCAGAGGTTTTT
CGTTGCCACGTGAGTAAAGCTTTCACGTATTATTGTGCCGCGTGCGACAA
CTCCTTCATTTGGGCAGGGAAATTCTGCTGCTTGGCTCTTAAACGGATTT
GTGCCTGGTCCTGTTTGTTTTTATCTGTCGTTCGTGCGGGGGTACGTATG
CATCAAGAGTGGAAATGAGAGACCAGGTTCCGCGGGAATGCGGGAACGTG
TCGAATTTTTTGCTACACCGCGTGTTGCAGTTTCCCTTGATTAGCTTCCC
GCCTCTCCCCCCCGACTGNTAGCCATTGGAGTTTGTCAAACACGCCCATC
ACTTCGTGAGCTCAACAAGGAAGATACCCGTTGCTTTTTTTTCGCTCCTG
TTTTTTTTTTTGGCGGTGATCATGATGGTGGTCGAGTAGATTTTGGTGTG
CGGGGTCGAAAACCTCACTTGGAGCAAAGGAGCTGATCACATTGCGCGTC
TTTACTTGGTCACGTACCCTCGAGGCACTTTTACGCAGCGCTTACAGCTG
TCTCTGAAAAAGGAAACGGCAAAACATTTATTAAGTCATTCGCAGCTGTT
ACCCGAATTCAAAGGAAGTAAGCACAAGATGCCGAACACCCTTCGCGGGA
TGCAGCGCACCCTCCATGCGACTCGGTATTTCACGGCTCTTTCCGCTTGG
TGATTGCGAGCCTGGTCCGGCGAGAACCTGGCGTGCTCCGTCCCGGCATT
GTAGGGGTGCGAGGCCAATGGTCTAACGACTACGGTTATGGTTTGGGTCA
GGGATACTCCGGGCTAGTGGTAACGAAACGTCAGCTGTCCTGCGATTTTT
CCATGAGTGTTATTTCACCAACAATTATTACTCCCCGACCGGAAATCATA
TTTCACTAGACCACGGTAGATTCACACCAAGACGTGTGTGGTGGTGATTG
TTGTAGTACATTCGCCCTGCCTATTGAGAGAGTAGCACAAGTTTTTGAAT
CTCGAATGCATCCACTAACCGCACCAAGCCGGTAGTTCTTGTCCCCGCGT
GTTTGCGTGCGATCGCAAGCAGCGAAGTCAATATGGTGCTAGCAAAGTGC
CCCATCCTCTAACACCATTCCATCAAAATATATCTTCCTCTTGGTGACCG
TTTTGTTCCGCGCTGGTTCCCTTTCGTCTACCCCCCTTCCCCAAATCTTC
GGTACGCACAAACCCCACCAACGGTCCGGGCTTCGACGACGACGGCAACT
AAATTGCCGGCGAAGAAGACGGCAATGGCTTGGGAGGCGATGGCTCGGGC
GGCGATGGCTCGCGCGGCGACCGCGGCACCAATCGCGGTAACGTCGAGGC
GGGCGAGCAGCGTGGTGCTGACGAGGATGCAGTCCTCTCCGAGCGCACCA
ACAAAGTAATGACGGATGAAGGAGGGGCATCAGGTAGTGGTGTTCGTAAG
GCTGACTAGGGTTAGGGTTAACGGTGATAGTAAGGCTGACTAGGTATGCG
GGAAGTCGCGCAAGTATTTTTCGGGGTCATCTTCCGTATCACAGCGCGAG
ACATAGTGCCCAAAATAGGTTGGGTTCGTCCGGCCCATGAGCCCATGGAT
GGTGTTTTTTCTTTAGTCGCACAGCTTTTCGGGCACAGCATTATGCCTGT
ATGTGTATACTAGTGACGTTTTCAGCAACGCCGTGAACTAATACCATGCA
CACACAGCAGTTGCAGCTCGTCTTTTACAGTTGGCGGGGGTTGTCTTGCA
GCGTGGCGATGTCAGGAATTCTGGTCGTGCAAATAGCAGCAAAGTAGTAC
TTTGCGCTGCTGGTGTAGGGGAATTTCATCAGTCCTTTTTCTTCGTCGCT
CTCGCGCTTTTCGGTACTTTTCCGTTGCGGGAAAACTTAGCGACACAATG
TTGGGCGGTGTGAGCACAGCCAAGTATAGTGCTCTGTACCCTCTGGTGTA
GATATTTTAAAATTGGATATTTTCGTTTTTGTTGATAGCAGTTCTATTAA
GCTCATAGAAGTACGTATATAGGTAGCCCTTTTCCTTCGTCGTTGTCATG
AATTTCGTCTTGTTTTTCTTTGCAGGGATTCCGTGGAGAGTCGTTAGGTG
TTTCGTGATTTGGGAAAGATAAAAGGAAGTACTAGACCTGCTTCAATATC
AACGGCTGTGGCACTTCCTTACGCCATGTAATATTGCTTTCTGTGCTCAC
CTACCTTGTGGGTGTTGCTTTTAAGTAACGAGGGCATTTTCAGAGAGGGA
CAACACGTGAACGTGA
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protein sequence of EsuBft785_9a-0001

>EsuBft785_9 ID=EsuBft785_9|Name=EsuBft785_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=113bp
MASQLQYRKTVRQSSLHARPGAMHAADMVHLRPLNRSIPFYMLILSDTPS
RRDEDDGDAASGIDLRSAAQAEAEVTGLGMLQAAWEREELLRVRPVDRAP
VMRLSRTIDSVDD
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mRNA from alignment at Scaffold_647:76347..80596-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft785_9a-0001 ID=EsuBft785_9a-0001|Name=EsuBft785_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4250bp|location=Sequence derived from alignment at Scaffold_647:76347..80596- (Ectocarpus subulatus male Bft15b)
GTTTCTGGTTGGCCTATACTCCCCGAGATACTCCCGACGTTGTCCGGACA
CATGCCGCACCAGCCCGTGAGGCTAGCTATGCACCCACACCTCGGCCGTG
ATACACACTACCATGGCGAGCCAGCTACAGTACCGCAAGACAGTTAGACA
GTCGTCACTGCACGCCAGACCCGGTGCAATGCATGCTGCCGATATGGTGC
ATTTGCGCCCTTTGAACCGCAGCATACCGTTCTACATGCTAATCTTGAGT
GACACACCAAGTCGGCGTGACGAGGATGACGGCGATGCTGCGAGCGGCAT
AGATCTTAGGAGTGCTGCACAAGCGGAGGCGGAGGTGACGGGGTTAGGGA
TGCTTCAAGCGGCGTGGGAGCGTGAGGAGCTGCTGCGCGTGCGTCCTGTG
GACCGTGCTCCGGTGATGCGTCTGTCGCGGACGATCGACTCCGTTGATGA
CTGAGACGCGTATCACTAAACCGCGGGGCAGCGCTAGTAGGAGGAGGAGG
TCCTTGGCCTTCGTGCTGTGTGTTCACCGAAACTCTGGCGAGGGGAGCGG
CCCTCGCCGGAGGACTCGTGTTGCCATGAACACCCGGCAACTGAACCGGG
CCAGCCTTCTCATGAGTACGTTGACCTCCATCGTTCTCCATGATTGTTTA
GCAGCGGTTGTGAGTGTAATGTGGTGGTAGCCTTGCGGTGGGGGTGGAGG
CGAAAGGTCTGATGTAGGTTGTGCCGAGCGGGACCAAGTCTGCTGCCGAA
AAGAGCCGAAAAGGGGGCTCCCCCGTAGTCATCGGGGTTGACGCACAAAA
GTGGCAAGGGGTCAGAGCGCGGCCCACGTATGAGATGCGCCATCCTCGCC
ACTGGCGCATTCGTGAAGTCGAACAGGTGGACGAAGGACAACGGGGAGGT
CGTCCCCTATACCCCAACCACCACCAACTGCCACGCCAAGAAGGCCGTTT
ACGAGTTGATGCGCTATGTGGGCAGCGTGGCCATTTCGGACAAAGATGTC
CAAAGTGAGCGAACATGGTAGTCCTGGGAGCAACATTTTTTTTCCTTGTG
CGTTCAAACATGTCACGAGCCCGGCAGCCGATGTCAGGTGTACCCGCTCG
ACTGCAAGTCCCTGCGCGTTCGTATGTTGACTCGTCTGCATTTCATAGAG
CCACAAAGTGTTGAGGACGTTGCGCTAGAGTGCCATCATTGATTTGCAAC
GCGAGGTGAGCACCCGCGGATGGCGTTTTGTATAAGTCTCCCAAGAAAGT
GACCATAAAACATATGTCCGGTCAATCACCAGCCGCGTGTAGCATGGCCG
AAATTTCAGTTGTAAATTAATATGACAACGTTCGGCGTGTGATTGTTTCC
ATTCCGTCATAACACGCACACCGCTTCTGCCTGCCCGCCTCACGCCTGCA
TGCGTACGACTGCTTCCTGTGCCTTCCTCCATGTCTGCTTTATATACGTT
CGGCCTGTCCTTGTGGGACTTGGGAAGTGACGTGGCGGTTTCTTGGACAA
GATCCAGGAGGGCAACCCGTGTGGCTTCCCTCGTCCACTTCACGTGCTCT
GCGCGGCGAGCAGTACGGCCGCCGGCAATCATGGCGGTTCGTCATGAGCA
TGTTCCCGATGGCGAGACCGACGAAGGCTTCGATGAGATGCTTAAGACAG
TCGAGTGGCAAGTAAACTGTGTGCTGGTGGAAAAGGGCAAGAGCGTCTAC
GAGCACGCCCAGAGGTTTTTCGTTGCCACGTGAGTAAAGCTTTCACGTAT
TATTGTGCCGCGTGCGACAACTCCTTCATTTGGGCAGGGAAATTCTGCTG
CTTGGCTCTTAAACGGATTTGTGCCTGGTCCTGTTTGTTTTTATCTGTCG
TTCGTGCGGGGGTACGTATGCATCAAGAGTGGAAATGAGAGACCAGGTAA
CTCTTCCGTCCTACACCGTATGTTGTTGTCTCTTGTCGGTGTTGGCGCCC
TCGCACAAAAATGATAAGGATCTGGGAGACCGGGTATCGGTTCCAGTTCG
GCCCGGGAAGGATTGCCAGCAAACTTCTGGACAAGAACGTTTCGGACATT
ACGGAGCAAGACGCCGTCAACGCCTTCATCCCATACCTGGACAGTGAGTC
TGCCATAGGATTCCCTTCAGCATCGTCGATTACATTAGTGTTTCAGCTCT
TTTTCTTTTTTTTGCGCAAGGTATTTCCGTCTCGGCCATCTCCCTGTCTT
TTGCCCCCAGGTTCCGCGGGAATGCGGGAACGTGTCGAATTTTTTGCTAC
ACCGCGTGTTGCAGTTTCCCTTGATTAGCTTCCCGCCTCTCCCCCCCGAC
TGNTAGCCATTGGAGTTTGTCAAACACGCCCATCACTTCGTGAGCTCAAC
AAGGAAGATACCCGTTGCTTTTTTTTCGCTCCTGTTTTTTTTTTTGGCGG
TGATCATGATGGTGGTCGAGTAGATTTTGGTGTGCGGGGTCGAAAACCTC
ACTTGGAGCAAAGGAGCTGATCACATTGCGCGTCTTTACTTGGTCACGTA
CCCTCGAGGCACTTTTACGCAGCGCTTACAGCTGTCTCTGAAAAAGGAAA
CGGCAAAACATTTATTAAGTCATTCGCAGCTGTTACCCGAATTCAAAGGA
AGTAAGCACAAGATGCCGAACACCCTTCGCGGGATGCAGCGCACCCTCCA
TGCGACTCGGTATTTCACGGCTCTTTCCGCTTGGTGATTGCGAGCCTGGT
CCGGCGAGAACCTGGCGTGCTCCGTCCCGGCATTGTAGGGGTGCGAGGCC
AATGGTCTAACGACTACGGTTATGGTTTGGGTCAGGGATACTCCGGGCTA
GTGGTAACGAAACGTCAGCTGTCCTGCGATTTTTCCATGAGTGTTATTTC
ACCAACAATTATTACTCCCCGACCGGAAATCATATTTCACTAGACCACGG
TAGATTCACACCAAGACGTGTGTGGTGGTGATTGTTGTAGTACATTCGCC
CTGCCTATTGAGAGAGTAGCACAAGTTTTTGAATCTCGAATGCATCCACT
AACCGCACCAAGCCGGTAGTTCTTGTCCCCGCGTGTTTGCGTGCGATCGC
AAGCAGCGAAGTCAATATGGTGCTAGCAAAGTGCCCCATCCTCTAACACC
ATTCCATCAAAATATATCTTCCTCTTGGTGACCGTTTTGTTCCGCGCTGG
TTCCCTTTCGTCTACCCCCCTTCCCCAAATCTTCGGTACGCACAAACCCC
ACCAACGGTCCGGGCTTCGACGACGACGGCAACTAAATTGCCGGCGAAGA
AGACGGCAATGGCTTGGGAGGCGATGGCTCGGGCGGCGATGGCTCGCGCG
GCGACCGCGGCACCAATCGCGGTAACGTCGAGGCGGGCGAGCAGCGTGGT
GCTGACGAGGATGCAGTCCTCTCCGAGCGCACCAACAAAGTAATGACGGA
TGAAGGAGGGGCATCAGGTAGTGGTGTTCGTAAGGCTGACTAGGGTTAGG
GTTAACGGTGATAGTAAGGCTGACTAGGTATGCGGGAAGTCGCGCAAGTA
TTTTTCGGGGTCATCTTCCGTATCACAGCGCGAGACATAGTGCCCAAAAT
AGGTTGGGTTCGTCCGGCCCATGAGCCCATGGATGGTGTTTTTTCTTTAG
TCGCACAGCTTTTCGGGCACAGCATTATGCCTGTATGTGTATACTAGTGA
CGTTTTCAGCAACGCCGTGAACTAATACCATGCACACACAGCAGTTGCAG
CTCGTCTTTTACAGTTGGCGGGGGTTGTCTTGCAGCGTGGCGATGTCAGG
AATTCTGGTCGTGCAAATAGCAGCAAAGTAGTACTTTGCGCTGCTGGTGT
AGGGGAATTTCATCAGTCCTTTTTCTTCGTCGCTCTCGCGCTTTTCGGTA
CTTTTCCGTTGCGGGAAAACTTAGCGACACAATGTTGGGCGGTGTGAGCA
CAGCCAAGTATAGTGCTCTGTACCCTCTGGTGTAGATATTTTAAAATTGG
ATATTTTCGTTTTTGTTGATAGCAGTTCTATTAAGCTCATAGAAGTACGT
ATATAGGTAGCCCTTTTCCTTCGTCGTTGTCATGAATTTCGTCTTGTTTT
TCTTTGCAGGGATTCCGTGGAGAGTCGTTAGGTGTTTCGTGATTTGGGAA
AGATAAAAGGAAGTACTAGACCTGCTTCAATATCAACGGCTGTGGCACTT
CCTTACGCCATGTAATATTGCTTTCTGTGCTCACCTACCTTGTGGGTGTT
GCTTTTAAGTAACGAGGGCATTTTCAGAGAGGGACAACACGTGAACGTGA
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Coding sequence (CDS) from alignment at Scaffold_647:76347..80596-

>EsuBft785_9a-0001 ID=EsuBft785_9a-0001|Name=EsuBft785_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=342bp|location=Sequence derived from alignment at Scaffold_647:76347..80596- (Ectocarpus subulatus male Bft15b)
ATGGCGAGCCAGCTACAGTACCGCAAGACAGTTAGACAGTCGTCACTGCA
CGCCAGACCCGGTGCAATGCATGCTGCCGATATGGTGCATTTGCGCCCTT
TGAACCGCAGCATACCGTTCTACATGCTAATCTTGAGTGACACACCAAGT
CGGCGTGACGAGGATGACGGCGATGCTGCGAGCGGCATAGATCTTAGGAG
TGCTGCACAAGCGGAGGCGGAGGTGACGGGGTTAGGGATGCTTCAAGCGG
CGTGGGAGCGTGAGGAGCTGCTGCGCGTGCGTCCTGTGGACCGTGCTCCG
GTGATGCGTCTGTCGCGGACGATCGACTCCGTTGATGACTGA
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