Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1000_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 114 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1000_2a-0001 ID=EsuBft1000_2a-0001|Name=EsuBft1000_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1143bp|location=Sequence derived from alignment at Scaffold_647:67844..69304- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGATAGTCGTGTCGGGGATTCCATGGAAGTGGGGGATCGAGGAGATTGC
AGTAGTGGACCAGTACACATCGCTCGGAGTAGAGATCGCAAAAGACTGCT
CGTGGAATGCACAAATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCA
GGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCATCAA
AGTGACGGTTTTGAAGAGCGCAATCGTACCGCCGTTAGAGTATGCCGGAG
AAGTATGGGAAGGAAATAAGAAGGTAGTGAGAGAACTCGAGGCGGCGCAG
ATGAAAGCAGCGAAAATCATCCTAGGTTGTTCCAAGTACACAAGTAATGC
AGCCGTCAGGGCAGAATTGGGGATCCAATCCCCACGGTCGGGAAGAGACG
CGAGGAAGCTGACCTGGCAGTATCGCATGGGCGGGATGGGAGAGGAGGGA
GGACGTATGGAAGGGGTTCGACATGACGAAGATGAAACGCTGGAAACGGA
GGGTCTACAGGGGTTCAAGGAGAAGATATCTGGTGGTTGTGCCGAGAGAG
AAAAACAGAATCTAAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTG
TACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACC
AATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAG
GCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGAC
GAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGT
CGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAACTTTACATGACTGAGC
TGGGAAAAATAGATGGGACGTACAGGGAGATGTTTGAGGCATGGAATAGA
GAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGGC
GGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGAGCC
ACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGT
GGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCAAACCGC
TATGGCATGCAAAACATAAGAGTACTTCCCCTCCATCGCTGCA back to topprotein sequence of EsuBft1000_2a-0001 >EsuBft1000_2 ID=EsuBft1000_2|Name=EsuBft1000_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=372bp
MIVVSGIPWKWGIEEIAVVDQYTSLGVEIAKDCSWNAQMSKVAEKGKARA
GKLHPILANRHLDTRIKVTVLKSAIVPPLEYAGEVWEGNKKVVRELEAAQ
MKAAKIILGCSKYTSNAAVRAELGIQSPRSGRDARKLTWQYRMGGMGEEG
GRMEGVRHDEDETLETEGLQGFKEKISGGCAEREKQNLRKESKDKEGLEV
YGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDD
EFKCDCGFECEDRVHVVAECPLYKKERELYMTELGKIDGTYREMFEAWNR
EERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSC
GNNAPSSRGRVVNGQTAMACKT back to topmRNA from alignment at Scaffold_647:67844..69304- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1000_2a-0001 ID=EsuBft1000_2a-0001|Name=EsuBft1000_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1461bp|location=Sequence derived from alignment at Scaffold_647:67844..69304- (Ectocarpus subulatus male Bft15b)
ATGATAGTCGTGTCGGGGATTCCGTAGATAGTATCTCGTACCGAGCAGGG
GGGCTGTTTGGGGTGCTCGGCAGAGTATACTGTCTACGGGGCCTCCGGGG
GGTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
GTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCA
GTACACATCGCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCAC
AAATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCAC
CCAATACTCGCAAACCGGCACCTCGATACACGCATCAAAGTGACGGTTTT
GAAGAGCGCAATCGTACCGCCGTTAGAGTATGCCGGAGAAGTATGGGAAG
GAAATAAGAAGGTAGTGAGAGAACTCGAGGCGGCGCAGATGAAAGCAGCG
AAAATCATCCTAGGTTGTTCCAAGTACACAAGTAATGCAGCCGTCAGGGC
AGAATTGGGGATCCAATCCCCACGGTCGGGAAGAGACGCGAGGAAGCTGA
CCTGGCAGTATCGCATGGGCGGGATGGGAGAGGAGGGGTTGCCATGAATT
GTATGGGAGGCGAAGTGGGCCAACAAAAAGAGGGGTAGACAACCCACGGA
ATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGTTCGACATGACGAAGA
TGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTG
GTGGTTGTGCCGAGAGAGAAAAACAGAATCTAAGGAAAGAATCCAAGGAT
AAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAA
GGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAAT
TCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACG
GTAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGA
AGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGG
AACTTTACATGACTGAGCTGGGAAAAATAGATGGGACGTACAGGGAGATG
TTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAG
GAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAG
GGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACGATTGGCC
ATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGT
GGTCAATGGTCAAACCGCTATGGCATGCAAAACATAAGAGTACTTCCCCT
CCATCGCTGCA back to topCoding sequence (CDS) from alignment at Scaffold_647:67844..69304- >EsuBft1000_2a-0001 ID=EsuBft1000_2a-0001|Name=EsuBft1000_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1119bp|location=Sequence derived from alignment at Scaffold_647:67844..69304- (Ectocarpus subulatus male Bft15b)
ATGATAGTCGTGTCGGGGATTCCATGGAAGTGGGGGATCGAGGAGATTGC
AGTAGTGGACCAGTACACATCGCTCGGAGTAGAGATCGCAAAAGACTGCT
CGTGGAATGCACAAATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCA
GGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCATCAA
AGTGACGGTTTTGAAGAGCGCAATCGTACCGCCGTTAGAGTATGCCGGAG
AAGTATGGGAAGGAAATAAGAAGGTAGTGAGAGAACTCGAGGCGGCGCAG
ATGAAAGCAGCGAAAATCATCCTAGGTTGTTCCAAGTACACAAGTAATGC
AGCCGTCAGGGCAGAATTGGGGATCCAATCCCCACGGTCGGGAAGAGACG
CGAGGAAGCTGACCTGGCAGTATCGCATGGGCGGGATGGGAGAGGAGGGA
GGACGTATGGAAGGGGTTCGACATGACGAAGATGAAACGCTGGAAACGGA
GGGTCTACAGGGGTTCAAGGAGAAGATATCTGGTGGTTGTGCCGAGAGAG
AAAAACAGAATCTAAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTG
TACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACC
AATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAG
GCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGAC
GAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGT
CGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAACTTTACATGACTGAGC
TGGGAAAAATAGATGGGACGTACAGGGAGATGTTTGAGGCATGGAATAGA
GAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGGC
GGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGAGCC
ACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGT
GGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCAAACCGC
TATGGCATGCAAAACATAA back to top
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