EsuBft933_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft933_3a-0001
Unique NameEsuBft933_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_638contigScaffold_638:436706..438355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft933_3
Protein domainsPTHR25952
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized transposon-derived protein os:caenorhabditis elegans gn: pe:5 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length1595
Hectar predicted targeting categoryother localisation
Evalue4.43e-25
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft933_3aEsuBft933_3aEctocarpus subulatus male Bft15bgeneScaffold_638 436706..438355 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft933_3a-0001-exonagat-exon-58957Ectocarpus subulatus male Bft15bexonScaffold_638 436706..437014 -
EsuBft933_3a-0001-exonEsuBft933_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_638 437070..438355 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft933_3a-0001-exonagat-three_prime_utr-23206Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_638 436706..437014 -
EsuBft933_3a-0001-exonagat-three_prime_utr-23207Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_638 437070..437212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft933_3a-0001-cdsEsuBft933_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_638 437213..438355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft933_3a-0001EsuBft933_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_638 437213..438355 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft933_3a-0001 ID=EsuBft933_3a-0001|Name=EsuBft933_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1595bp|location=Sequence derived from alignment at Scaffold_638:436706..438355- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGC
GGACATGGTCAATATCGGAACACAAGTGGAGTATACAGGCAAGGAGGGCA
GGTCGGCGGGGAAGACGACGACGGTGGTGACTGACGCGGAGGCCCTGTGG
GCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAG
TCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGAC
TGATGGTATCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCGAACGGG
ATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGTCGTACAAGCA
GACAGATCGGTTTGTGTACCTCGGACGTGCCATCTCCGCGGACGGGAAGG
CCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTTCCGC
CGGAATAGTGCTTCGATGTACGACAGGCCACGGGCCAACCGCCCGCTCAA
GATCCGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCG
CCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCAC
CGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCCGA
CCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAA
CCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTC
ATGCGCATGAAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCAGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGAGAGACGAAAAGCAAGGG
GGTAAATGGAGAGAGAGCGCCAAGGACCCGCAGGTGTGGTACAACAAGGT
CGAGTACGGAGCGTCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCAGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGGGAGTGAG
TACGGCCATCTCAGGACCGAAGAGAAAGAGGGCCAGGGAAGCGGCGGTGG
GGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGGCGGTC
GAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTTGTCCTCT
GTTTCCTTCCCTGCTGTATGCTATACTCCGTTATGTATGTCCTTTGTATT
GCCTTCGNACGAGAGCGCCAAGGATCCGCAGGTGTGGAGGCGNCATAACG
TCCCTGCCTACTCTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGC
CTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGTCCT
GTTTGCTCCGTTACTCTCATGCCGTGGTGCGTAGTGCCTGGTGCTGGTAC
GTTACCCTTTGATTTTTTCTTCAGGCGGGTGTGGGAAGCGTCCTCCTTTA
TTTTTGTTTTTGTTTTATTTTGATCGGTTTCCGAGTGCTCTTTTCTCGAA
CGGTCGGTGCGGTACCTGTTATTTTCTTTCTATCATTTTGTTTTT
back to top

protein sequence of EsuBft933_3a-0001

>EsuBft933_3 ID=EsuBft933_3|Name=EsuBft933_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=380bp
MLMVAVAEFDKDPKVTADMVNIGTQVEYTGKEGRSAGKTTTVVTDAEALW
AMLYADDAAIVSRSPESLEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPNG
IEERPFTVSAAGQSYKQTDRFVYLGRAISADGKADREITSRSCRAWKCFR
RNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTH
RQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFV
MRMKDSRLPKRMLLGAMAGGVGYRGRQESDWVSRLGEDLVAFNMRDEKQG
GKWRESAKDPQVWYNKVEYGASWFMRKWHRQEAEASAKRQRAREAEAGSE
YGHLRTEEKEGQGSGGGGEETATGHCCRSE
back to top

mRNA from alignment at Scaffold_638:436706..438355-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft933_3a-0001 ID=EsuBft933_3a-0001|Name=EsuBft933_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1650bp|location=Sequence derived from alignment at Scaffold_638:436706..438355- (Ectocarpus subulatus male Bft15b)
ATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGC
GGACATGGTCAATATCGGAACACAAGTGGAGTATACAGGCAAGGAGGGCA
GGTCGGCGGGGAAGACGACGACGGTGGTGACTGACGCGGAGGCCCTGTGG
GCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAG
TCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGAC
TGATGGTATCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCGAACGGG
ATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGTCGTACAAGCA
GACAGATCGGTTTGTGTACCTCGGACGTGCCATCTCCGCGGACGGGAAGG
CCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTTCCGC
CGGAATAGTGCTTCGATGTACGACAGGCCACGGGCCAACCGCCCGCTCAA
GATCCGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCG
CCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCAC
CGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCCGA
CCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAA
CCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTC
ATGCGCATGAAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCAGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGAGAGACGAAAAGCAAGGG
GGTAAATGGAGAGAGAGCGCCAAGGACCCGCAGGTGTGGTACAACAAGGT
CGAGTACGGAGCGTCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCAGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGGGAGTGAG
TACGGCCATCTCAGGACCGAAGAGAAAGAGGGCCAGGGAAGCGGCGGTGG
GGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGGCGGTC
GAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTTGTCCTCT
GTTTCCTTCCCTGCTGTATGCTATACTCCGTTATGTATGTCCTTTGTATT
GCCTTCGNACGAGAGCGCCAAGGATCCGCAGGTGTGGTACAACAAGTTCG
AGTACGGAGCGTCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGNCA
TAACGTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGATCTCGCTTTGCT
GTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTT
GTCCTGTTTGCTCCGTTACTCTCATGCCGTGGTGCGTAGTGCCTGGTGCT
GGTACGTTACCCTTTGATTTTTTCTTCAGGCGGGTGTGGGAAGCGTCCTC
CTTTATTTTTGTTTTTGTTTTATTTTGATCGGTTTCCGAGTGCTCTTTTC
TCGAACGGTCGGTGCGGTACCTGTTATTTTCTTTCTATCATTTTGTTTTT
back to top

Coding sequence (CDS) from alignment at Scaffold_638:436706..438355-

>EsuBft933_3a-0001 ID=EsuBft933_3a-0001|Name=EsuBft933_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1143bp|location=Sequence derived from alignment at Scaffold_638:436706..438355- (Ectocarpus subulatus male Bft15b)
ATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGC
GGACATGGTCAATATCGGAACACAAGTGGAGTATACAGGCAAGGAGGGCA
GGTCGGCGGGGAAGACGACGACGGTGGTGACTGACGCGGAGGCCCTGTGG
GCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAG
TCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGAC
TGATGGTATCGGAGCCAAAGACGGAGATCATGTGCATGCTGCCGAACGGG
ATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCCAGTCGTACAAGCA
GACAGATCGGTTTGTGTACCTCGGACGTGCCATCTCCGCGGACGGGAAGG
CCGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTTCCGC
CGGAATAGTGCTTCGATGTACGACAGGCCACGGGCCAACCGCCCGCTCAA
GATCCGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCG
CCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCAC
CGCCAGTTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCCGA
CCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAA
CCATCGAGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTC
ATGCGCATGAAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCAGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGAGAGACGAAAAGCAAGGG
GGTAAATGGAGAGAGAGCGCCAAGGACCCGCAGGTGTGGTACAACAAGGT
CGAGTACGGAGCGTCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCAGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGGGAGTGAG
TACGGCCATCTCAGGACCGAAGAGAAAGAGGGCCAGGGAAGCGGCGGTGG
GGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAG
back to top