EsuBft2802_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2802_4a-0001
Unique NameEsuBft2802_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1387455..1391426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQV4
ProteomeIdEsuBft2802_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length276
Hectar predicted targeting categoryother localisation
Evalue1.27e-51
EggNOG OGs2CYCX@1|root,2S3MN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionGlycosyl Hydrolase Family 88
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2802_4aEsuBft2802_4aEctocarpus subulatus male Bft15bgeneScaffold_630 1387455..1391426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2802_4a-0001EsuBft2802_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1387455..1389318 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2802_4a-0001-exonagat-exon-44330Ectocarpus subulatus male Bft15bexonScaffold_630 1387455..1387465 +
EsuBft2802_4a-0001-exonagat-exon-44329Ectocarpus subulatus male Bft15bexonScaffold_630 1387651..1387871 +
EsuBft2802_4a-0001-exonagat-exon-44331Ectocarpus subulatus male Bft15bexonScaffold_630 1388825..1389017 +
EsuBft2802_4a-0001-exonEsuBft2802_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1389087..1391426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2802_4a-0001-cdsEsuBft2802_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1387455..1387465 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2802_4a-0001-exonagat-three_prime_utr-11227Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 1389319..1391426 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2802_4a-0001 ID=EsuBft2802_4a-0001|Name=EsuBft2802_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2765bp|location=Sequence derived from alignment at Scaffold_630:1387455..1391426+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTGAGCGACGGCATCGAGGGCATCGACGGCAACGGCGTCGTCTG
CTGCCCGCTCGGCTGTGGCCAGTGCGTAGGTACGGGGTGCAGCACTGCTG
GCGCTGCGAACGGGCTTTCCTCTGGTTCATGCTGCGGAGGAGAGATCAAG
GATAGCGGCAACTACTGTGACGACACCGGCGTAGCCCCCTGCATCTACGG
CAGCGCCCCGGAAGATGACGATGATGACGGCGGAGGTGGCACGTGCAGCG
ATGGCATCGAGGGCATCGACGGCAACGGCGCCGTCTGCTGCCCGCTCGGC
TGTGGCCAGTGCGGAGGAACGGGATGCACCAGTGCTGGCGCCGCGAACGG
TCTTGACTCTGGTTCTTGCTGCGGAGGATCGATCAAGAGTAGCGGCAACT
ACTGTGACGACACCGGCGAAGCCCCGAACGACCTCGAATGCATCGACCAC
AAGGGCGAAATCTGTTGTCCGCTCGGGTGTGGCCCGTGCGGAGAATCGGG
ATGCGGCATTACTAGCGCCACGAACGGTCTTGGCAGGTCTTGCTGCCTAT
CGGGGCGAATGATAGCTGCGACGACACTAACGAGGTCTCATACATCATTC
AAGACGGCGGCGACGACGACGACGAAGGCGCTGCTGCTTCAGGGGGGGGG
GGCATGACTCGGAGAATCATTAGTCGAGTGCCACCACCACCCGTACGGGG
CGGGTGTTTGTACAAGGTTTGTCAGTAAACACCATGCGGTGGATTTTCTG
TACGCAACGGGATCGTGCTGGTGGGCCATGAACACAAGTGAATTCCCATC
GAATGTGGGGGGGAGGGTTGCCCCGTATTTTTCCTTATACTTTGTGTTGT
GTCATGTTTTGTCTCACAGAGTCATCGGTGACTATATTGCTGACTTTGAA
GTAAGGGTTCTGAGGTATTCATGTGGTAATACCGCACACGACTCGTGAAA
AACGGTTCTTGCATTCTTAGTTTTAGTAGGTTGCAGACGTATACGCATAT
CATAGCCTGCTTAGAGGCCACGCTATAAGAAGTGTGTGTATGCCTCCTGA
GCAGGAATGAAACTCCGGACAAGTTTTAGGCTCGGCCCGTTGACCCCGAA
GAGTGCAGTCACTCGCGAGACGGGTGCCTGCGCAAACCTTTCGAAAAGAG
TTTGATCGTGCACGTGTGGGTGGGGGCGTACTCATGTTGCACGTGCTGTC
TCGCGGGTCATCGGTCGGTGTAATATTTCGGTATTTAATTGAAGGAGGGG
TTCGAGGTATTAGTTTGGCTTTGCCACACACCACTCGTGAAAAATGTTGT
ACATCATAGCCTGCTTAGAGGCCAAGTTTTGGGAAAAGTTTGTTTTGATC
GGCGGTAGGAATGAGACTCCGGTAAAGTTTGAGACTCGGTCCATTGACCC
CGAAGAGTGCAGTGCCTCGCGTAACGGGCGCCTGGACAAACCGTTTGAAA
AGCGTTTGATGGTGCAGGTGTGGGAGGGGGGTGTACTAATGTTGCACGTA
TTGTCTCGAGGGTAATCGGTGTAGTATTATTTGAAGGAGGGGTTGTGAGG
TATTCATGAGGCTTTGCCACACGCCACTCGTGAAAAACTGTTGTTACATT
AACTACATGGCGCACATACAATGAATACCATAACATGCTTAGAGGCCAAG
GATAGGAAAAGATTGTTTTGATCCGCGGCAGGAATGAAACGCCGGAAAAG
TTTGAGACTCGGTCCGTTGACCCTGAAGACTGTCAGTGCCTCGCGTGACG
GGGGTTTGCAAAATTGTTTTGTTCATCGTGTCATTTTTGCATCGTGCAGG
TGTGTGGGGGTATGCAAATGCACGCGGGGGGTCGTGTTTTTTTCTGTCAT
CGGAAACGTCGTCAATCATTTTGTCAACCCGTTGTGATGGTGTGCTCTGC
TTAGTCACCAATCTCGCAGGCGAACGTGGTACTAGGAGTATTGCTGGAGA
AGTTTCATCGGTGTTCTTATCTCTTTGTCAATCAATATTTTTAATGGTAC
AACGCATCGAGGAGACACCCAAGTAGCACAAAATGCTGAAACAGCGCTCG
CTCTGAAAGCACACGTATCTACTACACAGCCAGGGATAGGAGATACACCT
TGGCCCGGGGGGTGGCCCCCGGCGTGTTTTGAAAGCTGGCAAGTAGTCTT
TTTCGGCGCGATGAGTCTAGGCAAGCATCACACGGGGGGCGTGCGAGAAT
AGCGATGGGAGGAAATGCTTGGTGACGTAAGGGTTCGAGGTTTGAACCCA
ACATGAGATGATGGACGTTCTCTGCGATCAAGATCATCCAGAACAAAGGC
TCCTCAGAACGGCAGGGGCGGTCCGGCAGGACGCTTGCGCGAGCGGGCTG
GGAAAGGCGGTTCAGATCAGTTTTCCACGATTGCCATGGGTTGAGGCAAA
TGTCATCGAGGGCATGATCGGAGTGGCGGCCCCAAACCCCATTAGAACGC
TGTTTCGACTACCATCAGCCGAAGGGCTTCGGTCACTGAGAAGTGCTCGA
ACCGCACCCACGACATACCACCGATACGGTTGTGCAACTGAACGTCGTGG
CCACGAGCAATGGCAGCTGTGACGGCCATGGTGGGAGGAAACATGTTGTG
TACGTATCGACGCGCCGGGGAGTGCGGTCGTCTGTCCACACAGCTTCACA
ACGTTCCCAGCGCCTGAGGCATACCGTACGTCCTCCTCAAGCTTGATGAA
GTCCATGCCAGTCATGCTGAAGGCTTCCGTCAGGCGGTCGCGCAACCAGG
ACGGATCCTGCCTGA
back to top

protein sequence of EsuBft2802_4a-0001

>EsuBft2802_4 ID=EsuBft2802_4|Name=EsuBft2802_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=218bp
MTLSDGIEGIDGNGVVCCPLGCGQCVGTGCSTAGAANGLSSGSCCGGEIK
DSGNYCDDTGVAPCIYGSAPEDDDDDGGGGTCSDGIEGIDGNGAVCCPLG
CGQCGGTGCTSAGAANGLDSGSCCGGSIKSSGNYCDDTGEAPNDLECIDH
KGEICCPLGCGPCGESGCGITSATNGLGRSCCLSGRMIAATTLTRSHTSF
KTAATTTTKALLLQGGGA
back to top

mRNA from alignment at Scaffold_630:1387455..1391426+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2802_4a-0001 ID=EsuBft2802_4a-0001|Name=EsuBft2802_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3972bp|location=Sequence derived from alignment at Scaffold_630:1387455..1391426+ (Ectocarpus subulatus male Bft15b)
ATGACGTTGAGGTAAGCATAGCAACAATTACACCGAAATTACATAAAATG
CACCCGCACCTCATGTTTGTGCCACACTAAACAACAATCAGCACGCTCTG
CTCAACCTATCACCACACGTTCCACGTATGTACTGCTCGCGCCCGCACGA
CCCGGTCGTAAGCCCATACGTTTGTAGAAACGGAGAGTACGTGCAGCGAC
GGCATCGAGGGCATCGACGGCAACGGCGTCGTCTGCTGCCCGCTCGGCTG
TGGCCAGTGCGTAGGTACGGGGTGCAGCACTGCTGGCGCTGCGAACGGGC
TTTCCTCTGGTTCATGCTGCGGAGGAGAGATCAAGGATAGCGGCAACTAC
TGTGACGACACCGGCGTAGCCCCCTGCATCTACGGCAGCGCCCCGGAAGA
TGACGATGATGACGGCGGTGAGCGGAGTACCACACTGTGTACCATGCGTT
CTGCTCGTTGGTGGCACAAACGTTTTGCCCGCCAGTCGGGGAATGTGAGA
TGCAAGTAGGTAGACTGGCGAATTTCCACTTACCACGATACCAATGTACA
AGCAAAATTTGTTGTCGGAGACGGATCAATCTATCGCTTGTTGTACGCGC
AAGAGTTGAAATGCAACATTGTTGGAAAAATGGACTGGTATAGGTAGAAT
ATTCTTCGCCCCCCCTCCCAAAATTTCTGGACACTAGCGGCGAGCACACG
TGCACCGGTGTTGTTGTAGGTCGTACAGATAGCGCCCGCACTTATGAAAT
TGAGAATCTCAAAAAATCAGAAGCTAAGAACTTGAGCACCTCGGTTAAGA
ACCCCACACTAAAACATATTTAGCGACCAGTTTTAGCCAACAAGAGGATG
ATCAACAAAATAAGAACTCCAGCCTCGGCCAAAACTAGCGGTTCTAAAGT
GCGGGCGCCATCTGTAGCGCTTGTGAGCGCGAGAGACGACCTCGGAGTGC
GTGGGCACGCCGAAGGGTTGAGGCACTGGCCACCATAGAACAGGTGGACA
CAGGAAGTAGTGCCTTTCTCCCGCCCACCCACCCCTTTTATTTCGAAGAT
GGGGGAACGGAAACGGGTACGAAGTCCTTATTTCCTGGTGAGGTTCAAGA
GTTATCTTGGGTGTAGAGTGTAGTTGAATGGTCGAGCACCATTTGGGGAA
TCGGCCACTCCAGGAGTAGCCGGTTTCCACCGGCTGGATGTAGCTGACAT
TCTTGCGGAGAGAGAGAAAGAGACAGGAATCAGGCGCGAGGATTGATTGG
TTTTTCAGCGTCGGTGCTTACCCCTTCTCTTTCTCTCTCGATCTTTGGTC
ATCTGGAAACCGACAATGATCAAGCAACTCGAAAAAAATACAAAAAATAC
TGTTGTGTGTTCAACAGCAGGAGGTGGCACGTGCAGCGATGGCATCGAGG
GCATCGACGGCAACGGCGCCGTCTGCTGCCCGCTCGGCTGTGGCCAGTGC
GGAGGAACGGGATGCACCAGTGCTGGCGCCGCGAACGGTCTTGACTCTGG
TTCTTGCTGCGGAGGATCGATCAAGAGTAGCGGCAACTACTGTGACGACA
CCGGCGAAGCCCCGTGCATCTACGGCCGCGCCCCCGACGTCTAACCAAAA
CTCGCTGAATTGGTCCAAAAGAGCACGTGCAGGAACGACCTCGAATGCAT
CGACCACAAGGGCGAAATCTGTTGTCCGCTCGGGTGTGGCCCGTGCGGAG
AATCGGGATGCGGCATTACTAGCGCCACGAACGGTCTTGGCAGGTCTTGC
TGCCTATCGGGGCGAATGATAGCTGCGACGACACTAACGAGGTCTCATAC
ATCATTCAAGACGGCGGCGACGACGACGACGAAGGCGCTGCTGCTTCAGG
GGGGGGGGGCATGACTCGGAGAATCATTAGTCGAGTGCCACCACCACCCG
TACGGGGCGGGTGTTTGTACAAGGTTTGTCAGTAAACACCATGCGGTGGA
TTTTCTGTACGCAACGGGATCGTGCTGGTGGGCCATGAACACAAGTGAAT
TCCCATCGAATGTGGGGGGGAGGGTTGCCCCGTATTTTTCCTTATACTTT
GTGTTGTGTCATGTTTTGTCTCACAGAGTCATCGGTGACTATATTGCTGA
CTTTGAAGTAAGGGTTCTGAGGTATTCATGTGGTAATACCGCACACGACT
CGTGAAAAACGGTTCTTGCATTCTTAGTTTTAGTAGGTTGCAGACGTATA
CGCATATCATAGCCTGCTTAGAGGCCACGCTATAAGAAGTGTGTGTATGC
CTCCTGAGCAGGAATGAAACTCCGGACAAGTTTTAGGCTCGGCCCGTTGA
CCCCGAAGAGTGCAGTCACTCGCGAGACGGGTGCCTGCGCAAACCTTTCG
AAAAGAGTTTGATCGTGCACGTGTGGGTGGGGGCGTACTCATGTTGCACG
TGCTGTCTCGCGGGTCATCGGTCGGTGTAATATTTCGGTATTTAATTGAA
GGAGGGGTTCGAGGTATTAGTTTGGCTTTGCCACACACCACTCGTGAAAA
ATGTTGTACATCATAGCCTGCTTAGAGGCCAAGTTTTGGGAAAAGTTTGT
TTTGATCGGCGGTAGGAATGAGACTCCGGTAAAGTTTGAGACTCGGTCCA
TTGACCCCGAAGAGTGCAGTGCCTCGCGTAACGGGCGCCTGGACAAACCG
TTTGAAAAGCGTTTGATGGTGCAGGTGTGGGAGGGGGGTGTACTAATGTT
GCACGTATTGTCTCGAGGGTAATCGGTGTAGTATTATTTGAAGGAGGGGT
TGTGAGGTATTCATGAGGCTTTGCCACACGCCACTCGTGAAAAACTGTTG
TTACATTAACTACATGGCGCACATACAATGAATACCATAACATGCTTAGA
GGCCAAGGATAGGAAAAGATTGTTTTGATCCGCGGCAGGAATGAAACGCC
GGAAAAGTTTGAGACTCGGTCCGTTGACCCTGAAGACTGTCAGTGCCTCG
CGTGACGGGGGTTTGCAAAATTGTTTTGTTCATCGTGTCATTTTTGCATC
GTGCAGGTGTGTGGGGGTATGCAAATGCACGCGGGGGGTCGTGTTTTTTT
CTGTCATCGGAAACGTCGTCAATCATTTTGTCAACCCGTTGTGATGGTGT
GCTCTGCTTAGTCACCAATCTCGCAGGCGAACGTGGTACTAGGAGTATTG
CTGGAGAAGTTTCATCGGTGTTCTTATCTCTTTGTCAATCAATATTTTTA
ATGGTACAACGCATCGAGGAGACACCCAAGTAGCACAAAATGCTGAAACA
GCGCTCGCTCTGAAAGCACACGTATCTACTACACAGCCAGGGATAGGAGA
TACACCTTGGCCCGGGGGGTGGCCCCCGGCGTGTTTTGAAAGCTGGCAAG
TAGTCTTTTTCGGCGCGATGAGTCTAGGCAAGCATCACACGGGGGGCGTG
CGAGAATAGCGATGGGAGGAAATGCTTGGTGACGTAAGGGTTCGAGGTTT
GAACCCAACATGAGATGATGGACGTTCTCTGCGATCAAGATCATCCAGAA
CAAAGGCTCCTCAGAACGGCAGGGGCGGTCCGGCAGGACGCTTGCGCGAG
CGGGCTGGGAAAGGCGGTTCAGATCAGTTTTCCACGATTGCCATGGGTTG
AGGCAAATGTCATCGAGGGCATGATCGGAGTGGCGGCCCCAAACCCCATT
AGAACGCTGTTTCGACTACCATCAGCCGAAGGGCTTCGGTCACTGAGAAG
TGCTCGAACCGCACCCACGACATACCACCGATACGGTTGTGCAACTGAAC
GTCGTGGCCACGAGCAATGGCAGCTGTGACGGCCATGGTGGGAGGAAACA
TGTTGTGTACGTATCGACGCGCCGGGGAGTGCGGTCGTCTGTCCACACAG
CTTCACAACGTTCCCAGCGCCTGAGGCATACCGTACGTCCTCCTCAAGCT
TGATGAAGTCCATGCCAGTCATGCTGAAGGCTTCCGTCAGGCGGTCGCGC
AACCAGGACGGATCCTGCCTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_630:1387455..1391426+

>EsuBft2802_4a-0001 ID=EsuBft2802_4a-0001|Name=EsuBft2802_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=657bp|location=Sequence derived from alignment at Scaffold_630:1387455..1391426+ (Ectocarpus subulatus male Bft15b)
ATGACGTTGAGCGACGGCATCGAGGGCATCGACGGCAACGGCGTCGTCTG
CTGCCCGCTCGGCTGTGGCCAGTGCGTAGGTACGGGGTGCAGCACTGCTG
GCGCTGCGAACGGGCTTTCCTCTGGTTCATGCTGCGGAGGAGAGATCAAG
GATAGCGGCAACTACTGTGACGACACCGGCGTAGCCCCCTGCATCTACGG
CAGCGCCCCGGAAGATGACGATGATGACGGCGGAGGTGGCACGTGCAGCG
ATGGCATCGAGGGCATCGACGGCAACGGCGCCGTCTGCTGCCCGCTCGGC
TGTGGCCAGTGCGGAGGAACGGGATGCACCAGTGCTGGCGCCGCGAACGG
TCTTGACTCTGGTTCTTGCTGCGGAGGATCGATCAAGAGTAGCGGCAACT
ACTGTGACGACACCGGCGAAGCCCCGAACGACCTCGAATGCATCGACCAC
AAGGGCGAAATCTGTTGTCCGCTCGGGTGTGGCCCGTGCGGAGAATCGGG
ATGCGGCATTACTAGCGCCACGAACGGTCTTGGCAGGTCTTGCTGCCTAT
CGGGGCGAATGATAGCTGCGACGACACTAACGAGGTCTCATACATCATTC
AAGACGGCGGCGACGACGACGACGAAGGCGCTGCTGCTTCAGGGGGGGGG
GGCATGA
back to top