EsuBft1492_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1492_8a-0001
Unique NameEsuBft1492_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:736893..739826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4787.PITG_12212T0
ProteomeIdEsuBft1492_8
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR024133
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl4776|Peronosporales
Length79
Hectar predicted targeting categoryother localisation
Evalue1.21e-09
EggNOG OGs2E45E@1|root,2SB3Q@2759|Eukaryota,3QG83@4776|Peronosporales
Ec32 ortholog descriptionTransmembrane protein 138
Ec32 orthologEc-20_004270.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionTransmembrane protein 138
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_8aEsuBft1492_8aEctocarpus subulatus male Bft15bgeneScaffold_630 736893..739826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_8a-0001EsuBft1492_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 736973..739692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_8a-0001-exonagat-exon-13701Ectocarpus subulatus male Bft15bexonScaffold_630 736893..737099 -
EsuBft1492_8a-0001-exonagat-exon-13703Ectocarpus subulatus male Bft15bexonScaffold_630 737528..737622 -
EsuBft1492_8a-0001-exonagat-exon-13700Ectocarpus subulatus male Bft15bexonScaffold_630 738184..738355 -
EsuBft1492_8a-0001-exonEsuBft1492_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 738807..738959 -
EsuBft1492_8a-0001-exonagat-exon-13702Ectocarpus subulatus male Bft15bexonScaffold_630 739658..739826 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_8a-0001-exonagat-three_prime_utr-4357Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 736893..736972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_8a-0001-cdsEsuBft1492_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 736973..737099 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1492_8a-0001-exonagat-five_prime_utr-2842Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 739693..739826 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1492_8a-0001 ID=EsuBft1492_8a-0001|Name=EsuBft1492_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=796bp|location=Sequence derived from alignment at Scaffold_630:736893..739826- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TATCCACAATTTGTCTTGGACAGGGCGTGCTCTCCGTACAGGGTGGAGAT
CGGAGGCTCCTTTGCCGGGTACAGGTGATCGACGGACAGCGACAGCGGTG
CCCTACCCAACCGGAGGACATCATCTATCTGACGATGACTGCGGTGGCCA
GGAACGCATCAGTGACAACCGGGGGCGACTGTATCCTGTTCAGGGTGAAG
CTTTTCATCATGGTGTTTCTGACGGTCGTCGACATGACTCTCAACAGCAG
CGTTGAGCACGAAACTTTTGGCACGTGGGACGGGACCGGGAGGGACGGAA
CCGCCTTGGTGCTCATCCTTGGGTTTCAGCTCGTGGTCCAAGTGGGAAAT
TTCGCTTGTCTCTTTCTTATGATGTTTGAGACTTACCCGTTTCGAGTCGG
GCTTATGGGGATGCTGACGTCGCAATACCTGACGGTGTACATCATAAACG
TCTTGTATTTTGTCACGACAGCCTGCGTCTACGGCTATCGAGTGGCAGCC
ATGGTGCAAGGCGAAGAAGGGATGGGAATCTGGCAAGTGTGGGACTTGCG
CGGCTACCTTCCTCTCTCAATCTTCCACAAGATAGGCGACGGCAACTGTG
TACTATGTGACCAACATCCGTGCGGCACTACTCCTCGGCGACCCGATGTT
CTACTGCAAGCAAGCGTGGGTAGGGATGTACTTCGATCGAGGGGGAGGAC
TAGGTGGTGGCCTTGAGATCAAGCAGCGTGTGGATGACGAGGAGGGAGAA
CGTCGCGAGGCTGCCCCCAAAAGCACCGACGCTGAACTGTCTGGGA
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protein sequence of EsuBft1492_8a-0001

>EsuBft1492_8 ID=EsuBft1492_8|Name=EsuBft1492_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=193bp
MTAVARNASVTTGGDCILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDG
TGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLT
VYIINVLYFVTTACVYGYRVAAMVQGEEGMGIWQVWDLRGYLPLSIFHKI
GDGNCVLCDQHPCGTTPRRPDVLLQASVGRDVLRSRGRTRWWP
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mRNA from alignment at Scaffold_630:736893..739826-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1492_8a-0001 ID=EsuBft1492_8a-0001|Name=EsuBft1492_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2934bp|location=Sequence derived from alignment at Scaffold_630:736893..739826- (Ectocarpus subulatus male Bft15b)
TATCCACAATTTGTCTTGGACAGGGCGTGCTCTCCGTACAGGGTGGAGAT
CGGAGGCTCCTTTGCCGGGTACAGGTGATCGACGGACAGCGACAGCGGTG
CCCTACCCAACCGGAGGACATCATCTATCTGACGATGACTGCGGTGGCCA
GGAACGCATCAGTGACAACGTGAGACCGCTCACTGGCAACTAGGTGCTGT
CCTGAAGCTCGTCGAGATACCGCCGTTGGCAACCATTTCGGTTCAGGCTC
TATGTACCACGCTTTTCCCACTGCTGCTCTGTTGGATGGAACTTGATACT
TGGATCCGCTCATCTCCATGTGACCATCAGCTGCGCGCTGGTACAAATAT
TCCGCCGCATTTTTCACGCAGCCTCGAAGGATCCGAGTTGTGTTTGGCCC
TGACCGATGTTCAGATCTTTTGTCTGGACGCCGGCGACCGGCTCACTGCT
GCACCCTCGGGTCCTTGCGCACCCGCGGGTGGAGTACAACAAGGACAAAA
AAGGAGCACACAGCAGAAGTCAATGGTAGAATTCCAAGGATATCCTTTTC
ACCTCTTGAACGAGTATCGTACTGCAGTACCGCCGGCGCGATGCACACCA
TGTCTACAATACTCTAGCACGACATTCAGACTAGACTGGTCTAGAGCACA
TTCAACACCTATACAAACGTTGGTGGAAACGAGCAGCCTGTTCTCGTGGT
CGCCATTGTCCTGTAAAGCTTTTCAGCTACCGAACGCACCGCTGTGGTAC
AGTACAGGTGGCACAACGCCAGACTATTACTAATGAACTCCATGAGAACC
TCGAGGATTACACGTATCTTTGAAGTATCTGCGCATGATTGTGTTTCTTG
CCGGCTTCTTGTGTCAGCGGGGGCGACTGTATCCTGTTCAGGGTGAAGCT
TTTCATCATGGTGTTTCTGACGGTCGTCGACATGACTCTCAACAGCAGCG
TTGAGCACGAAACTTTTGGCACGTGGGACGGGACCGGGAGGGACGGAACC
GCCTTGGTGCTCATCCTTGGGTAAGGAAGGCCTGCCGAGATTTGATCGAG
GCATAGGGTTCCCTACTTGAGAGGCTCGTGTGCTACACACGCCTGCCGGG
CTTCCATCCACCCACCGTAGAAACTTGGGCGCCACTTCCATATTCACACA
TGTATGTAGTAGCCGATTAACAACATTTCTTGTGACACTGGGTGAAGAAA
ACTCTCACTACATACGGAGTGCATTGTTTTGGTGCGGTGCTCTGCCGAGC
GACCCGAACATGCATTAATACTTATTACATAATTTGCTGCATACCCCACA
GAGGGAACAAGCCGCGAGCGAGCCTCGCGCCAAGTGTAGGGATTGATTCT
GTACGTGTAGATGGAATTATGCACTCAATCGGTCTGGCCATATCCTCACG
AATGAGACACCCGCCTCGGCTCACAGATAACCAGCGCCCCTCTTTTGGAC
CTGTGTTCAAAATACATACAGGTTTCAGCTCGTGGTCCAAGTGGGAAATT
TCGCTTGTCTCTTTCTTATGATGTTTGAGACTTACCCGTTTCGAGTCGGG
CTTATGGGGATGCTGACGTCGCAATACCTGACGGTGTACATCATAAACGT
CTTGTATTTTGTCACGACAGCCTGCGTCTACGGCTATCGAGTGGTGAGAT
GAGAGACACGACAAAACGCAGCAGCATCGTTTGACGAAGTGTTGACACCC
GAATGTAGCGTATCCAAGGGCTTACACCAGAACGGCCTCCAAACCCTGCT
CAACGAGCCTGGGAGTCGCAGTGACGGTAATTGGCCGTGTCTTTTGAACA
ATAAGCAGCACCTACATTGTGTTCTTTAAAATCAACACGGCAACGAGAGG
CTGTAAAATACTGCCAAGGGAAGATCTTAGACCATGTAGTCCCTGCTAAC
CCCGCCAACTAGCTTCACGTCTCCGACAGAATAGCTTGCGGCTTTTGAGA
CTATTATCTCGTACCACAAGGGGCTAACCACGGGCTTCCAAAACTTCTGA
GCTTTGATGCCGCTGTTGACTCTGCGATCAATCCAGATCAGGTTATTATC
ACGTGTCTATCTTGAGACAACCGTCCCTACCCTTCTAGCAGCGACAAGAC
CAGCTCGTGGTTGACACAGGTGTGCTTTCACATCCCACCGCACGTCTCCC
TTTGCTTGTTTTGTGTGCTGTATGTTTTCGCTGCCAACTGGTTTCTGCCA
ACAGGCAGCCATGGTGCAAGGCGAAGAAGGGATGGGAATCTGGCAAGTGT
GGGACTTGCGCGGCTACCTTCCTCTCTCAATCTTCCACAAGATAGGCGAG
TGCCGCTGGCGACACCTGGCTCCGCCGTTCGTTCCGCCCGCTGAGCAACC
GCTTGCGTCCCTCTGTGGCGATGAACATCTCAATCTCGCGCTCTCGACAA
GTCAGGCAGTCACGAAAACCCGGGAAGCCTAGTCACGTCCAGCCGACCGA
AGCCCGGAGTACTGCTGTCTCATGAAAGGAGCGTTCCATTTGTTGTCTTG
TTTCCCAGTAGTGTGTCGACAAGGCGATGATGCCATGTTGTGCCTCACTT
TCCTTGCGGTCATGTCATTCGCCTGAAAGCACTCAGGCGTCGATGTGCCA
ATAGTTTCGTTGCATGTGCATGGGATCGGACGTCCACCTCCATTGGAACT
GCGCGTTCAAATGGCGACCTAAAGACCAACGCACGAAGAAAATGACACCC
TTGCCTACTGTGCCACCGTCGTCGCAGCGGCAACTGTGTACTATGTGACC
AACATCCGTGCGGCACTACTCCTCGGCGACCCGATGTTCTACTGCAAGCA
AGCGTGGGTAGGGATGTACTTCGATCGAGGGGGAGGACTAGGTGGTGGCC
TTGAGATCAAGCAGCGTGTGGATGACGAGGAGGGAGAACGTCGCGAGGCT
GCCCCCAAAAGCACCGACGCTGAACTGTCTGGGA
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Coding sequence (CDS) from alignment at Scaffold_630:736893..739826-

>EsuBft1492_8a-0001 ID=EsuBft1492_8a-0001|Name=EsuBft1492_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=582bp|location=Sequence derived from alignment at Scaffold_630:736893..739826- (Ectocarpus subulatus male Bft15b)
ATGACTGCGGTGGCCAGGAACGCATCAGTGACAACCGGGGGCGACTGTAT
CCTGTTCAGGGTGAAGCTTTTCATCATGGTGTTTCTGACGGTCGTCGACA
TGACTCTCAACAGCAGCGTTGAGCACGAAACTTTTGGCACGTGGGACGGG
ACCGGGAGGGACGGAACCGCCTTGGTGCTCATCCTTGGGTTTCAGCTCGT
GGTCCAAGTGGGAAATTTCGCTTGTCTCTTTCTTATGATGTTTGAGACTT
ACCCGTTTCGAGTCGGGCTTATGGGGATGCTGACGTCGCAATACCTGACG
GTGTACATCATAAACGTCTTGTATTTTGTCACGACAGCCTGCGTCTACGG
CTATCGAGTGGCAGCCATGGTGCAAGGCGAAGAAGGGATGGGAATCTGGC
AAGTGTGGGACTTGCGCGGCTACCTTCCTCTCTCAATCTTCCACAAGATA
GGCGACGGCAACTGTGTACTATGTGACCAACATCCGTGCGGCACTACTCC
TCGGCGACCCGATGTTCTACTGCAAGCAAGCGTGGGTAGGGATGTACTTC
GATCGAGGGGGAGGACTAGGTGGTGGCCTTGA
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