EsuBft2479_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2479_5a-0001
Unique NameEsuBft2479_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:573965..576761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2479_5
Protein domainsCoil
Protein domainsIPR001878
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length177
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_5aEsuBft2479_5aEctocarpus subulatus male Bft15bgeneScaffold_630 573965..576761 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_5a-0001-exonagat-exon-59051Ectocarpus subulatus male Bft15bexonScaffold_630 573965..574226 -
EsuBft2479_5a-0001-exonEsuBft2479_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 575250..576761 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_5a-0001-exonagat-three_prime_utr-9976Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 573965..574142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_5a-0001-cdsEsuBft2479_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 574143..574226 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_5a-0001-exonagat-five_prime_utr-6398Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 576732..576761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2479_5a-0001EsuBft2479_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 574143..576731 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2479_5a-0001 ID=EsuBft2479_5a-0001|Name=EsuBft2479_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1774bp|location=Sequence derived from alignment at Scaffold_630:573965..576761- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGAGGGCAGAGACGCC
CCAGGGAGGTCTTCGTGAGCTCAAGACCATACACGACCCTGAATCATCTG
TACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAAGATCTCTAGA
GGTGAAAACCCCCAAAACGCCCAAAATGAGATGCTCCAAACCGCAAAGTC
TTTAACCGAAAAAGCACTAACTGTCAACGAAACGTTCGTCCTTCACCTCT
TCCTGGATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGA
CACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATGATCGA
ATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGA
AGGGCGCAGAGCAAGCGCACTTCGCCGACGGTGAGGGCCGCAGGGAGCGG
TACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGACCGTGG
CCGCAGCAGCAGTCGTGGCCGCGGCGGCGGCGGTCGCGGCGGCCGCTCAG
GCGGATCCGGAGGAGTTGAGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCC
GATGGCGGCGGTGGCGGGGACTATAAGTTCCCGGGCCGGTGCTTTAGGTG
TGGACATCGTGGACATCAAGCGATCGGCTGCACTACCAACGATGAGGACT
TCGTGCCGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAG
TGCGCGACGGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGA
CGTGGACTCCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAG
GCGAGTGTGGTACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACTA
GGCCAAGCGGTGTACGTGGCCGACACAGCGGCCCCGTGCTCCATGTTCCG
ATGTGCAGACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGG
GGATCGGAGGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTG
ACCTTAGTCCTACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAA
TGCTGCCCATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGT
TGGCGGAGGAGGGCCACACGTATTCGGGAATGAAGGGGGGCCTCACGCTG
ACCACGAAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCT
GACCCAACGAGGCTATCAAATAAAGCCAACGCTACACACCGCCTGTGCCG
CACTCATTGTTCCTGGCGATGCGAAAGCAGCCAACCCCACTGACCTCAAC
GAGTACCACCTCGCGCACGGCCATGCCCACGAGACATTGCTCAGGATCAC
GGCGGAGCAGCAGGGAGTGCAGCTGACGGATGGACCGCTGCTACCCTGTC
TTGGCTGTTCGATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACG
AGCACACGCGCACTGCTATCTTTCGCAGATGACGAGGAGGGCGGGCAGGG
CGAGAGCAGAGCGGATGCATCACGCCAAGGTTGGGGGGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft2479_5a-0001

>EsuBft2479_5 ID=EsuBft2479_5|Name=EsuBft2479_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=522bp
MKRAETPQGGLRELKTIHDPESSVQPSEDLKSLTSTKISRGENPQNAQNE
MLQTAKSLTEKALTVNETFVLHLFLDALSDEYAMTKHNLRHAKELTRTGV
LKEVMIEYKAIKDKLEQGKGKGAKGAEQAHFADGEGRRERYSSRSQGQGR
GRGGDRGRSSSRGRGGGGRGGRSGGSGGVEESKGSSSGGADGGGGGDYKF
PGRCFRCGHRGHQAIGCTTNDEDFVPWCARCEGWGHTKEKCATEEAVLAQ
VVEHESDVDSVEDQAFCAVAVPPGECGTVGEVGLVGVVELGQAVYVADTA
APCSMFRCADNFVNYRERSGWVKGIGGDKAPVPLLGYGDVTLVLQTEDGG
VPVPVLNAAHVPEAPYNLLSLSSLAEEGHTYSGMKGGLTLTTKAGGEVWF
PRTGKLLTQRGYQIKPTLHTACAALIVPGDAKAANPTDLNEYHLAHGHAH
ETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSTRALLSFAD
DEEGGQGESRADASRQGWGGXX
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mRNA from alignment at Scaffold_630:573965..576761-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2479_5a-0001 ID=EsuBft2479_5a-0001|Name=EsuBft2479_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2797bp|location=Sequence derived from alignment at Scaffold_630:573965..576761- (Ectocarpus subulatus male Bft15b)
CACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGAGGGCAGAGACGCC
CCAGGGAGGTCTTCGTGAGCTCAAGACCATACACGACCCTGAATCATCTG
TACAGCCGTCAGAGGACCTCAAGTCCCTGACGTCGACCAAGATCTCTAGA
GGTGAAAACCCCCAAAACGCCCAAAATGAGATGCTCCAAACCGCAAAGTC
TTTAACCGAAAAAGCACTAACTGTCAACGAAACGTTCGTCCTTCACCTCT
TCCTGGATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGA
CACGCGAAGGAGTTGACGCGGACCGGTGTGCTAAAGGAAGTAATGATCGA
ATACAAGGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGA
AGGGCGCAGAGCAAGCGCACTTCGCCGACGGTGAGGGCCGCAGGGAGCGG
TACTCAAGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGACCGTGG
CCGCAGCAGCAGTCGTGGCCGCGGCGGCGGCGGTCGCGGCGGCCGCTCAG
GCGGATCCGGAGGAGTTGAGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCC
GATGGCGGCGGTGGCGGGGACTATAAGTTCCCGGGCCGGTGCTTTAGGTG
TGGACATCGTGGACATCAAGCGATCGGCTGCACTACCAACGATGAGGACT
TCGTGCCGTGGTGTGCGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAG
TGCGCGACGGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGA
CGTGGACTCCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAG
GCGAGTGTGGTACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACTA
GGCCAAGCGGTGTACGTGGCCGACACAGCGGCCCCGTGCTCCATGTTCCG
ATGTGCAGACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGG
GGATCGGAGGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTG
ACCTTAGTCCTACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAA
TGCTGCCCATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGT
TGGCGGAGGAGGGCCACACGTATTCGGGAATGAAGGGGGGCCTCACGCTG
ACCACGAAAGCCGGGGGGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCT
GACCCAACGAGGCTATCAAATAAAGCCAACGCTACACACCGCCTGTGCCG
CACTCATTGTTCCTGGCGATGCGAAAGCAGCCAACCCCACTGACCTCAAC
GAGTACCACCTCGCGCACGGCCATGCCCACGAGACATTGCTCAGGATCAC
GGCGGAGCAGCAGGGAGTGCAGCTGACGGATGGACCGCTGCTACCCTGTC
TTGGCTGTTCGATGTCCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACG
AGCACACGCGCAGTTAAGAAGTTATTTCGCGTGTATCTCGACCTGGGGGT
AAAGATTAAGANAACGCTACACACCGCCTGTGCCGCACTCATTGTTCCTG
GCGATGCGAAATCAGCCAACGCCACTGACCTCAACGAGTACCACCTCGCG
CACGGCCATGCCCACGAGACATTGCTCAGGATCACGGCGGAGCAGCAGGG
AGTGCAGCTGACGGATGGACCGCTGCTACCCTGTCTTGGCTGTTCGATGT
CCAAGGGACAGGTGAAACCCGTCCAGAAGAGCACGAGCACACGCGCAGTT
AAGAAGTTATTTCGCGTGTATCTCGACTTGGGGGGAAATATGAAAACCAG
GAGCATTGGTGGCAACTGGTACACACTGATCATCAGAGACGATTTCTCCC
GTTGGACGCGTGTTTTCTTCTTGAAACACAAGTCTGACGCAGCGGTTGGG
TTTGAGAAGTTCCTGGCGGACTACCGAACAAAAGGGGTTCCGTGTGAGGT
TTAGATCGCACGTACCAACGATGGCGGCGAGTTTCAGGGGTAGTTTGCGG
AAGTTGGCCGCAGACACGGCATCAAACAAGAATTCACCCCCTCTCACACC
CCAAAATACAACGGTGTAGCGGAGAGAGCGCTAGGGTCGATCACTGATGC
CGCGCTTGCGTCAGGAATCCAAGCGACGCAACTGTTCCCCGACGCACCGA
ACCACCCCGGGTTGTGGGCCCAGGCCATCTCGTGTGCATGCCATCAGCTG
AACTGCGCCGCCACTAAATCAAACGAGGGAGACAAATCCGCCTACGAGAT
GTTCCACGACTCCCCACCGCCTGTCGGGTCTACATACCCGTTTCTCAAAC
CAGCCGTGTTCAAGTCGAGAAGAAAAGCAAAGTCGCAACCCAAGGGCGGA
AAAGGATGGTACCTTGGTCGTGCCCACAATCACCCCCGTGACTGCGTTCG
CATGCTAACCGAAGCTGGAACCGTAATCACCACCCGCAATTTCACCTGGC
GCCACGTGCCCGCTGCATCGCCCGCTCCCACGCAGCTGCTATCTTTCGCA
GATGACGAGGAGGGCGGGCAGGGCGAGAGCAGAGCGGATGCATCACGCCA
AGGTTGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_630:573965..576761-

>EsuBft2479_5a-0001 ID=EsuBft2479_5a-0001|Name=EsuBft2479_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1566bp|location=Sequence derived from alignment at Scaffold_630:573965..576761- (Ectocarpus subulatus male Bft15b)
ATGAAGAGGGCAGAGACGCCCCAGGGAGGTCTTCGTGAGCTCAAGACCAT
ACACGACCCTGAATCATCTGTACAGCCGTCAGAGGACCTCAAGTCCCTGA
CGTCGACCAAGATCTCTAGAGGTGAAAACCCCCAAAACGCCCAAAATGAG
ATGCTCCAAACCGCAAAGTCTTTAACCGAAAAAGCACTAACTGTCAACGA
AACGTTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCCA
TGACAAAGCACAACCTGCGACACGCGAAGGAGTTGACGCGGACCGGTGTG
CTAAAGGAAGTAATGATCGAATACAAGGCGATCAAGGACAAGCTGGAGCA
GGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAGCGCACTTCGCCGACG
GTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCGT
GGTCGTGGCGGCGACCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGCGG
CGGTCGCGGCGGCCGCTCAGGCGGATCCGGAGGAGTTGAGGAGAGCAAGG
GAAGCAGCAGTGGAGGCGCCGATGGCGGCGGTGGCGGGGACTATAAGTTC
CCGGGCCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGGCTG
CACTACCAACGATGAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGGGT
GGGGCCACACCAAAGAAAAGTGCGCGACGGAGGAGGCCGTCCTAGCGCAA
GTGGTGGAGCATGAGAGCGACGTGGACTCCGTGGAAGACCAGGCGTTTTG
TGCCGTGGCAGTCCCCCCAGGCGAGTGTGGTACCGTTGGTGAAGTAGGTC
TAGTGGGGGTTGTGGAACTAGGCCAAGCGGTGTACGTGGCCGACACAGCG
GCCCCGTGCTCCATGTTCCGATGTGCAGACAACTTCGTGAACTACCGTGA
GCGTAGCGGTTGGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTTCCTC
TTCTAGGATACGGAGATGTGACCTTAGTCCTACAGACGGAAGATGGTGGA
GTACCCGTACCAGTACTGAATGCTGCCCATGTACCAGAGGCCCCCTACAA
CCTCCTCTCGCTGTCTTCGTTGGCGGAGGAGGGCCACACGTATTCGGGAA
TGAAGGGGGGCCTCACGCTGACCACGAAAGCCGGGGGGGAGGTGTGGTTC
CCCCGGACTGGAAAGCTGCTGACCCAACGAGGCTATCAAATAAAGCCAAC
GCTACACACCGCCTGTGCCGCACTCATTGTTCCTGGCGATGCGAAAGCAG
CCAACCCCACTGACCTCAACGAGTACCACCTCGCGCACGGCCATGCCCAC
GAGACATTGCTCAGGATCACGGCGGAGCAGCAGGGAGTGCAGCTGACGGA
TGGACCGCTGCTACCCTGTCTTGGCTGTTCGATGTCCAAGGGACAGGTGA
AACCCGTCCAGAAGAGCACGAGCACACGCGCACTGCTATCTTTCGCAGAT
GACGAGGAGGGCGGGCAGGGCGAGAGCAGAGCGGATGCATCACGCCAAGG
TTGGGGGGGGGNNNNN
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