EsuBft1387_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1387_7a-0001
Unique Name	EsuBft1387_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:471476..472838 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005100548.1
ProteomeId	EsuBft1387_7
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	136
Hectar predicted targeting category	other localisation
Evalue	1.37e-14
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3E41I@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_7a	EsuBft1387_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 471476..472838 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_7a-0001-exon	EsuBft1387_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 471476..472838 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_7a-0001-exon	agat-three_prime_utr-3484	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 471476..472184 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_7a-0001-cds	EsuBft1387_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 472185..472838 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1387_7a-0001	EsuBft1387_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 472185..472838 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:471476..472838-
coding sequence from alignment at Scaffold_630:471476..472838-

spliced messenger RNA

>EsuBft1387_7a-0001 ID=EsuBft1387_7a-0001|Name=EsuBft1387_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1363bp|location=Sequence derived from alignment at Scaffold_630:471476..472838- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCGGTCATCGTGCGCGTGACCGGACTGTTCGGACTGATGGTATC
GGAGCCAAAGACGGAGATCATGTGCATGCTGCCGAAAGGGATCGAGGAAC
GCCCGTTCACCCCGTTCACGGTAAGCGCCGCCGGCCAGACGTACAAGCAG
ACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGGAAGGC
CGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCC
GGAACAGTGCTTCGATATACGACAGGCGACGGGCCAACCGCCAGCTCAAG
ATCCGGCTACTCCAGGCTAAAGGGGTGGAGACACTCCTGAATGAGTGCGC
CTCGTGGAGTCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACC
GCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGAAAAGCTCAGAC
CGCCCCATGTCCTATGCCCAGGCCCTCATCCGGGCAGGCTGCGAGGACAC
CATCGAGGCCACCGTGCGTAAACGGAGACTGTGTGTCGCGGGCTTTGTTA
TGCACATAAAGGACAGCCGGCTCCCCAAGCGCATGCTGTTAGATCGATGG
CGGGGGGCGTGGGATACCCGGGCGGGCAGGAGAGCGACTGGGTGTCTCGT
CTAGAAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGG
TAAATGGAAAGAGAGCGCCAAAGACCCGGAGGTGTGGTACAACAAGGTCG
AGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGGAA
GCGTCCGCGAAGCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGA
GGACGGCCATCTCAGGACCGAAGTGAAAGAGAGCCGGGCAAGCGGCGGTG
GGGGGGGAGAAACGGCGACCGGGCACTGCTGTAGAAGCAAGTAGGGCGGC
TGAGGCAGCACTTGTGGCGAACTATGTACCAGCGTGGTGTTGTTGCGCCC
TGTTTCCCTCCCTGCTGTATGCTATACTCGTTTATGTATGTCCTTTGTAT
TGCCTTCGGCATCTGTGCTGTGTGTTTTTGTTCATGACCTCCCTGCCTAC
TCTGCTGTGTTGGGCACCTTGATCTCGCTTTGCCGTTGCCTTTGTTTTTG
TACGTCTGGCTGTCTGCCCATCTGCCCCCTCTTTGTCCTGTTTGCTCCGT
TACTCCCATGCCCTGGTGCGTAGTGCCTGGTGCTGGTACGTTACCCTTTG
ATTATTTCTCTGGGCGGGTGTGTGAAGCGTCCTCCTATATTTTTGTTTTT
GTTTTATTTTGATTGGTTTCCGAGGGCTCTTTTCTCGAACGGTCGGTGCG
ATACCTGTTCTTT

protein sequence of EsuBft1387_7a-0001

>EsuBft1387_7 ID=EsuBft1387_7|Name=EsuBft1387_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=217bp
MMSVIVRVTGLFGLMVSEPKTEIMCMLPKGIEERPFTPFTVSAAGQTYKQ
TDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDRRRANRQLK
IRLLQAKGVETLLNECASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKSSD
RPMSYAQALIRAGCEDTIEATVRKRRLCVAGFVMHIKDSRLPKRMLLDRW
RGAWDTRAGRRATGCLV

mRNA from alignment at Scaffold_630:471476..472838-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1387_7a-0001 ID=EsuBft1387_7a-0001|Name=EsuBft1387_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1363bp|location=Sequence derived from alignment at Scaffold_630:471476..472838- (Ectocarpus subulatus male Bft15b)
ATGATGTCGGTCATCGTGCGCGTGACCGGACTGTTCGGACTGATGGTATC
GGAGCCAAAGACGGAGATCATGTGCATGCTGCCGAAAGGGATCGAGGAAC
GCCCGTTCACCCCGTTCACGGTAAGCGCCGCCGGCCAGACGTACAAGCAG
ACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGGAAGGC
CGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCC
GGAACAGTGCTTCGATATACGACAGGCGACGGGCCAACCGCCAGCTCAAG
ATCCGGCTACTCCAGGCTAAAGGGGTGGAGACACTCCTGAATGAGTGCGC
CTCGTGGAGTCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACC
GCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGAAAAGCTCAGAC
CGCCCCATGTCCTATGCCCAGGCCCTCATCCGGGCAGGCTGCGAGGACAC
CATCGAGGCCACCGTGCGTAAACGGAGACTGTGTGTCGCGGGCTTTGTTA
TGCACATAAAGGACAGCCGGCTCCCCAAGCGCATGCTGTTAGATCGATGG
CGGGGGGCGTGGGATACCCGGGCGGGCAGGAGAGCGACTGGGTGTCTCGT
CTAGAAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGG
TAAATGGAAAGAGAGCGCCAAAGACCCGGAGGTGTGGTACAACAAGGTCG
AGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGGAA
GCGTCCGCGAAGCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGA
GGACGGCCATCTCAGGACCGAAGTGAAAGAGAGCCGGGCAAGCGGCGGTG
GGGGGGGAGAAACGGCGACCGGGCACTGCTGTAGAAGCAAGTAGGGCGGC
TGAGGCAGCACTTGTGGCGAACTATGTACCAGCGTGGTGTTGTTGCGCCC
TGTTTCCCTCCCTGCTGTATGCTATACTCGTTTATGTATGTCCTTTGTAT
TGCCTTCGGCATCTGTGCTGTGTGTTTTTGTTCATGACCTCCCTGCCTAC
TCTGCTGTGTTGGGCACCTTGATCTCGCTTTGCCGTTGCCTTTGTTTTTG
TACGTCTGGCTGTCTGCCCATCTGCCCCCTCTTTGTCCTGTTTGCTCCGT
TACTCCCATGCCCTGGTGCGTAGTGCCTGGTGCTGGTACGTTACCCTTTG
ATTATTTCTCTGGGCGGGTGTGTGAAGCGTCCTCCTATATTTTTGTTTTT
GTTTTATTTTGATTGGTTTCCGAGGGCTCTTTTCTCGAACGGTCGGTGCG
ATACCTGTTCTTT

Coding sequence (CDS) from alignment at Scaffold_630:471476..472838-

>EsuBft1387_7a-0001 ID=EsuBft1387_7a-0001|Name=EsuBft1387_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=654bp|location=Sequence derived from alignment at Scaffold_630:471476..472838- (Ectocarpus subulatus male Bft15b)
ATGATGTCGGTCATCGTGCGCGTGACCGGACTGTTCGGACTGATGGTATC
GGAGCCAAAGACGGAGATCATGTGCATGCTGCCGAAAGGGATCGAGGAAC
GCCCGTTCACCCCGTTCACGGTAAGCGCCGCCGGCCAGACGTACAAGCAG
ACAGATCGGTTTGTGTACCTCGGACGTACCATCTCCGCGGACGGGAAGGC
CGACCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCC
GGAACAGTGCTTCGATATACGACAGGCGACGGGCCAACCGCCAGCTCAAG
ATCCGGCTACTCCAGGCTAAAGGGGTGGAGACACTCCTGAATGAGTGCGC
CTCGTGGAGTCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACC
GCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGAAAAGCTCAGAC
CGCCCCATGTCCTATGCCCAGGCCCTCATCCGGGCAGGCTGCGAGGACAC
CATCGAGGCCACCGTGCGTAAACGGAGACTGTGTGTCGCGGGCTTTGTTA
TGCACATAAAGGACAGCCGGCTCCCCAAGCGCATGCTGTTAGATCGATGG
CGGGGGGCGTGGGATACCCGGGCGGGCAGGAGAGCGACTGGGTGTCTCGT
CTAG