EsuBft2190_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2190_2a-0001
Unique NameEsuBft2190_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:156058..157858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2190_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length127
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_2aEsuBft2190_2aEctocarpus subulatus male Bft15bgeneScaffold_630 156058..157858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_2a-0001EsuBft2190_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 157133..157525 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_2a-0001-exonagat-exon-7858Ectocarpus subulatus male Bft15bexonScaffold_630 156058..156194 -
EsuBft2190_2a-0001-exonEsuBft2190_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 156335..156611 -
EsuBft2190_2a-0001-exonagat-exon-7859Ectocarpus subulatus male Bft15bexonScaffold_630 156777..157552 -
EsuBft2190_2a-0001-exonagat-exon-7857Ectocarpus subulatus male Bft15bexonScaffold_630 157771..157858 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_2a-0001-exonagat-three_prime_utr-8655Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 156058..156194 -
EsuBft2190_2a-0001-exonagat-three_prime_utr-8656Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 156335..156611 -
EsuBft2190_2a-0001-exonagat-three_prime_utr-8657Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 156777..157132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_2a-0001-cdsEsuBft2190_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 157133..157525 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2190_2a-0001-exonagat-five_prime_utr-5596Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 157526..157552 -
EsuBft2190_2a-0001-exonagat-five_prime_utr-5597Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 157771..157858 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2190_2a-0001 ID=EsuBft2190_2a-0001|Name=EsuBft2190_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1278bp|location=Sequence derived from alignment at Scaffold_630:156058..157858- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCGGGGGCACCGAGGAAACGAGCACATCCCACGCCCAGCTGGAGTCGTC
GCTCATTTGAGAGCAGTCGCGGCGCTTCGAGACAACGGGATCCCGTGGAA
CACCGGTTCGGGCACATGCGCCAAGGCCTTGGGTCGCACAGAAACCCGAC
GGCTACGCAAGCGAAGGAACGGGCAGCACGAGGGGACCTGAATCGTGGTT
TGCGCGGGGGTTCCCGCGCGAACCACAATCGGACTTCGCGGAAAGGAAGT
GACTTCATCGCGTCCGGGGTCCGGGGACAGATCATCCTCCCGGTGACCGA
CGAAGAGCGGTCTGCTACGATGCGGGCGCCCTCGAGGAACCCTGCCTCAG
CTGTGATGTTCTCGCGGTACCTAAGCGTTGTCAAACCCCGTGCGGACCCT
ACGGTAGAGGGTGGTGCATCCCAGGAGTCGACACCAGCCTCTGCAGGCCA
GACTCCCGTAGTTTTCAACTCATACGCTCCTCGAGAGTTTTGGAAGCGGA
AACGATAGCACTTGCTGTTTCAGGTCAAGTAGACAGGGCGTAGAGATGAT
GAGAGAGGGCTACAAGATTGCAGGTGTTTCGTTTTTTCTACCGGGAACAG
CACGAAGTAGACCGTAGACTACAATCCCAGCGTGCCCAGCAGGCCATGTC
ATGTTTCTTTGCGGAAGCATGGGGCTTGCCCACGCACTGTTGTGCAGAGT
GTGAAACGGATAGGACGGTATGCGGGAGGAGCGAGTCTGGCGCTCCCGTT
ATCGAGCCCAGCCGTATTTTCTTTTTTTTCTTTTTTATGTTGGGGTAGGG
GGCTCGCCCGCCCAACCTGGGCAGCACGTGTTGGAGTGACTTCCCGGTTA
CGCAAAACCAGCAGGTGTATTACACCCGTTGTCGAATTATCTTATTTTTT
ATTGCGAAGTATTCTCTATTGTTCTTTTCTTTTAGTTTAGAAGTTTCGGT
ACGTTTCCCTCCCTGCTGCGCACCGGATGTACAATGCACACAGGTAGGGG
CTTCTCGGTTCCCAGTCCCCCCCCGATATCCTCTCTATGTAGATAGTCAT
GTCCACAATTTTGGGTGCACACGTATCGGATCGACGTTCGGATTCTTCAG
TAACAGAGCCTTTTGGATGATATGTCCTGGGTGGTAGAAAGGTATCAGCA
ACTTCAGATCAATTCCCTTCGTCAGAATTGGTTTACCGGTGTTGAAGACG
TATGGGATCGTTGTATACTGTACGCTTCCTTGTTGATTAGTTAATGATAA
TGAACGCAATTAAACCCGGCTTTGCCAC
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protein sequence of EsuBft2190_2a-0001

>EsuBft2190_2 ID=EsuBft2190_2|Name=EsuBft2190_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=130bp
MRQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIAS
GVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGG
ASQESTPASAGQTPVVFNSYAPREFWKRKR
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mRNA from alignment at Scaffold_630:156058..157858-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2190_2a-0001 ID=EsuBft2190_2a-0001|Name=EsuBft2190_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1801bp|location=Sequence derived from alignment at Scaffold_630:156058..157858- (Ectocarpus subulatus male Bft15b)
TTCGGGGGCACCGAGGAAACGAGCACATCCCACGCCCAGCTGGAGTCGTC
GCTCATTTGAGAGCAGTCGCGGCGCTTCGAGACAACGGGTACGTGTGACA
CCATAGAGTCCGGGGGTGGGGGTGGAGGAGCATGTCTCCAGCGTGTAAAT
GTTGTTGATGAACATGCGCATCTTGTCGACGAAGCTCTAGGCCTGGTTTC
CCTGAGAGGTGCCGCGCTATACGTCCCTCTGTCCTGCTCATTCTCGTCCC
CCGATCCTCGCCCCTTTGCGTTGTCTTTCGCCACTTCGCCTTCTGCCCCC
CCACAGGATCCCGTGGAACACCGGTTCGGGCACATGCGCCAAGGCCTTGG
GTCGCACAGAAACCCGACGGCTACGCAAGCGAAGGAACGGGCAGCACGAG
GGGACCTGAATCGTGGTTTGCGCGGGGGTTCCCGCGCGAACCACAATCGG
ACTTCGCGGAAAGGAAGTGACTTCATCGCGTCCGGGGTCCGGGGACAGAT
CATCCTCCCGGTGACCGACGAAGAGCGGTCTGCTACGATGCGGGCGCCCT
CGAGGAACCCTGCCTCAGCTGTGATGTTCTCGCGGTACCTAAGCGTTGTC
AAACCCCGTGCGGACCCTACGGTAGAGGGTGGTGCATCCCAGGAGTCGAC
ACCAGCCTCTGCAGGCCAGACTCCCGTAGTTTTCAACTCATACGCTCCTC
GAGAGTTTTGGAAGCGGAAACGATAGCACTTGCTGTTTCAGGTCAAGTAG
ACAGGGCGTAGAGATGATGAGAGAGGGCTACAAGATTGCAGGTGTTTCGT
TTTTTCTACCGGGAACAGCACGAAGTAGACCGTAGACTACAATCCCAGCG
TGCCCAGCAGGCCATGTCATGTTTCTTTGCGGAAGCATGGGGCTTGCCCA
CGCACTGTTGTGCAGAGTGTGAAACGGATAGGACGGTATGCGGGAGGAGC
GAGTCTGGCGCTCCCGTTATCGAGCCCAGCCGTATTTTCTTTTTTTTCTT
TTTTATGTTGGGGTAGGGGGCTCGCCCGCCCAACCTGGGCAGCACGTGTT
GGAGTGACTTCCCGGTTACGCAAAACCAGCAGGTGTATTACACCCGTTGT
CGAATTATCTCATTTTTTTTNGGCGCTCCCGTTATCGAGCCCAGCCGTAT
TTTCGTTTTTTTCTTTTTTATGTTGGGGTAGGGGGCTCGCCCGCCCAACC
TGGGCAGCACGTGTTGGAGTGACTTCCCGGTTACGCAAAACCAGCAGGTG
TATTACACCCGTTGTCGAATTATCTTATTTTTTATTGCGAAGTATTCTCT
ATTGTTCTTTTCTTTTAGTTTAGAAGTTTCGGTACGTTTCCCTCCCTGCT
GCGCACCGGATGTACAATGCACACAGGTAGGGGCTTCTCGGTTCCCAGTC
CCCCCCCGATATCCTCTCTATGTAGATAGTCATGTCCACAATTTTGGGTG
CACACGTATCGGATCGACGTTCGGATTCTTCAGTAACAGAGCCTTTTGGA
TGATATGTCCTGGGTGGTAGAAAGGTATTANNNNNNNNNCCCCCCCGATA
TCCTCTCTATGTAGATAGTCATGTCCACAATTTTGGGTGCACACGTATCG
GATCGACGTTCGGATTCTTCAGTAACAAGAGCCTTTTGGATGGTATGTCC
TGGGTGGTAAAAAGGTATCAGCAACTTCAGATCAATTCCCTTCGTCAGAA
TTGGTTTACCGGTGTTGAAGACGTATGGGATCGTTGTATACTGTACGCTT
CCTTGTTGATTAGTTAATGATAATGAACGCAATTAAACCCGGCTTTGCCA
C
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Coding sequence (CDS) from alignment at Scaffold_630:156058..157858-

>EsuBft2190_2a-0001 ID=EsuBft2190_2a-0001|Name=EsuBft2190_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=393bp|location=Sequence derived from alignment at Scaffold_630:156058..157858- (Ectocarpus subulatus male Bft15b)
ATGCGCCAAGGCCTTGGGTCGCACAGAAACCCGACGGCTACGCAAGCGAA
GGAACGGGCAGCACGAGGGGACCTGAATCGTGGTTTGCGCGGGGGTTCCC
GCGCGAACCACAATCGGACTTCGCGGAAAGGAAGTGACTTCATCGCGTCC
GGGGTCCGGGGACAGATCATCCTCCCGGTGACCGACGAAGAGCGGTCTGC
TACGATGCGGGCGCCCTCGAGGAACCCTGCCTCAGCTGTGATGTTCTCGC
GGTACCTAAGCGTTGTCAAACCCCGTGCGGACCCTACGGTAGAGGGTGGT
GCATCCCAGGAGTCGACACCAGCCTCTGCAGGCCAGACTCCCGTAGTTTT
CAACTCATACGCTCCTCGAGAGTTTTGGAAGCGGAAACGATAG
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