EsuBft101_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft101_12a-0001
Unique NameEsuBft101_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:575169..581183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4792.ETI51940
ProteomeIdEsuBft101_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl4776|Peronosporales
Length127
Hectar predicted targeting categoryother localisation
Evalue1.82e-17
EggNOG OGs2D0C9@1|root,2S4TG@2759|Eukaryota,3QFWN@4776|Peronosporales
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft101_12aEsuBft101_12aEctocarpus subulatus male Bft15bgeneScaffold_627 575169..581183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_12a-0001EsuBft101_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 575796..581065 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_12a-0001-exonagat-exon-23840Ectocarpus subulatus male Bft15bexonScaffold_627 575169..575845 -
EsuBft101_12a-0001-exonagat-exon-23839Ectocarpus subulatus male Bft15bexonScaffold_627 576362..576434 -
EsuBft101_12a-0001-exonagat-exon-23835Ectocarpus subulatus male Bft15bexonScaffold_627 577162..577303 -
EsuBft101_12a-0001-exonagat-exon-23837Ectocarpus subulatus male Bft15bexonScaffold_627 577827..577879 -
EsuBft101_12a-0001-exonagat-exon-23838Ectocarpus subulatus male Bft15bexonScaffold_627 578338..578415 -
EsuBft101_12a-0001-exonagat-exon-23836Ectocarpus subulatus male Bft15bexonScaffold_627 579379..579479 -
EsuBft101_12a-0001-exonEsuBft101_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 581038..581183 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_12a-0001-exonagat-three_prime_utr-204Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 575169..575795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_12a-0001-cdsEsuBft101_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 575796..575845 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_12a-0001-exonagat-five_prime_utr-120Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 581066..581183 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft101_12a-0001 ID=EsuBft101_12a-0001|Name=EsuBft101_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1270bp|location=Sequence derived from alignment at Scaffold_627:575169..581183- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCGGTGTCTCTCCGGTGGTCTATCTCCCGTCTCTTCGTGCCTGAGACA
TCAAGCAAGAGGGGCAACCGGTCATATTCGTGCCCGCGGGGAAGGTTGAT
CGTCTAGCACATCGTAGTATGACGAAGGACTCCCCCAAAAAGTCAGCGGG
TAGCTCGACCGCCACGAAGAAGGCGCAGCATGGGCGTGGCAGCGGCGGCA
CCTCCGTCAAGAGAGAAGTGAAGAGAGAGGTCGACACCAACGTGAAGAGC
GAAAAAGGTGAACGAGAAGAAGCCGTTCTCAAGGAGAAGCGCAAGGCGGG
GCAGAAGCTCGCCACGCCTCCTCCGGGTCAGGCGGATCGCTGTTTCTACG
AGACGCTGCTGAAACAAAAGCCGGAGAGCCACATGGCGCAGGACTGGTGT
CTGGCGCACGGGGTGTGCGGGGCGGCTGAAGCGGAAGCCCTCTACAAGAG
AGTCTGCAAGAGGAAAGGGCTGCAACCGTTAGCCCACGCGCCGTCGTTAT
CCAATTCCCCCATCAAAAAGGCGAAGCGTTCTTCATCGGGGGGTAAGAGC
AGGCCGAGGAGCAGCTTGCCGAAAGAGATGGACGCGGATACGGGTTTCGA
AGCAAGTGGCGTTTTCGAGGGAGTTGGCACGACAGGATTTTAATCGGTCG
GGGCTACGCATCTTCTGTAGTTTTTTCCTTTTCCGTGTTCGCGCTTAGGT
TTTTATTAATGAATACTTCCAATGTGCGTGCGTGTGCTGTGTGCATTTGC
CAGCTGTCTGTACTCGACCACCTGCCGGAAGAACTGCCGCGCTCCACGTG
AGGCGTACTGGGTTGGTTGGGTCTTGTGCGTTAGACCCACCGTCTCTGGA
TGGAGGATGGTGTCAGCAGGACGTACATGTGTTGACGGCCACGGCGCTGT
CTCCATTTAGACCTCAAACGACCCCGGCAGGATATATGTTTGGGAGGCAT
GGCACGGATATTCGAAAGATCAGCCGTACTTCGGAAATTCAGGGCGGTGC
GGCGTCGTCCCGGCCGGCGGCCTGGGCGGTAAAGCGGCAGGGCGTCTGGT
AGTAACAATAAGAAGAAGCAATGAGAGAGAGAGAGAGAGCAATATTGCAA
GACTCCCGGTCTGAAGGGCGACGGTGCACTGCTACCGCTGTTGCTGTTCC
AAGATGTTCACGCCGCGAATGCATGCGTCCTTCTCCGGAGAGAACTGTTG
ACGGCGATTCTGCGCGGAAAAAAATTGCCGGTGACAAGAGAAAACGATTT
CCACATCGCCGTATTTGCGT
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protein sequence of EsuBft101_12a-0001

>EsuBft101_12 ID=EsuBft101_12|Name=EsuBft101_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=174bp
MTKDSPKKSAGSSTATKKAQHGRGSGGTSVKREVKREVDTNVKSEKGERE
EAVLKEKRKAGQKLATPPPGQADRCFYETLLKQKPESHMAQDWCLAHGVC
GAAEAEALYKRVCKRKGLQPLAHAPSLSNSPIKKAKRSSSGGKSRPRSSL
PKEMDADTGFEASGVFEGVGTTGF
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mRNA from alignment at Scaffold_627:575169..581183-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft101_12a-0001 ID=EsuBft101_12a-0001|Name=EsuBft101_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6015bp|location=Sequence derived from alignment at Scaffold_627:575169..581183- (Ectocarpus subulatus male Bft15b)
GTGCGGTGTCTCTCCGGTGGTCTATCTCCCGTCTCTTCGTGCCTGAGACA
TCAAGCAAGAGGGGCAACCGGTCATATTCGTGCCCGCGGGGAAGGTTGAT
CGTCTAGCACATCGTAGTATGACGAAGGACTCCCCCAAAAAGTCAGGTGT
GTTGGGGGAATTGGCAGTGTGTGTACACAGAGAAGGCGAATGAAAACACA
ACCAACAGCGGCGAACACCTTGGCTGCATTTGGGGCGACATCGAGTGCTT
TGTGTACAGGCAACGTGTGTTGGTTTCAACGGAACAATAGGTGTCTAGTA
TGGGGGACACGTGCGGGCGAGGGGATCAGCCCTTCTACCGCCGGGATAAT
CTTCTCATGAATGACCTTCCTATTGCTAAGCGGTCATCTCTGTACATCTC
CTCCGCCCCCCCATGATAACTCAGTGTATATTGCTTGCCTGGCCTACTCC
AGCAGTATCATTATGCATTCTACTAAGTATCCGGCGAGGAGGTGCCGGTG
CCCTTTGGATGTCGGTGCCTAAAGCTGCACATACATATTGATTGCACCGG
ATTCGCTCCGATTCCCATGGGTATATTCAACGCTTTTGCGCTTCCAGCTG
CGCTGGAGAGTGACTGACTCCAAACAACAGATTTGACTCCAAACAACAAG
GTTGTACTCCGAGTATGCATAGACTTCTTTGTACTCCACATGACCAGTGT
ACCTGATACTGGTAGATGTGCAACCTGTCCTTTTCACCTTCTTCTTCACC
AAATTGAGCGTATCCAGTGGACTGTGCAGCATGTACATGCATGGTACAGG
TTACAAGTTATGCAGGGTGAAGAACTCCTCTTTGGCTTCGGAGAATGGAG
GAGGAGTGGCGTCGGTTGTTCCAGTACGCTGTAACGGCCGCATTTTTTTT
CAACCGCAACTCCAATCGAAAAACTCTTCTTTAGAGATGGATTCATTGGG
TCATATTGATGAAATAAACAAAAACCTTGGTACTCAAGTTCGGCTTCACG
GTCGACGAGGGAAAGGGATGGCTGAGCGCTTCTCGCGATAATAACTAAGG
CAAGCACCGCAGGGGGAAAGGTGGGGCAATACAACAAAAACAAAAAAATG
AACAAAACTGCTGTGTGACCTTCCTCTTGTTGTGTGACCCCGGCTGTTAC
GTCAGGTATAGACTAGGCTATACGGCGAAAGGCCTGTAAGCCGGCGCGAG
AATTTGATGGGATCGATGGGATTGATGGGATTGATGGGATTGATGGGACT
GATGGGACTGATGGGACGAACACTCACACTGGTGGTGGGAATACTGGCAA
CGATAGTGTCGGTAGCAAATGCAGGGAAGGCGATGAGACAAGGTCAAACG
CACGCGCATCCGAAGTATAGAAGCCACAGCAAAACACGCGCAGTTTCTTT
TGTTACTAATATCGCACGGTGTCTGCTCTTTTTCCGGAGAGCAGCGTAGA
GTCCCCCATGACACTCGGTCACAGTGTCCCAGATCGTGGACTATGGAAGC
ACTCTTGTGTTTTCCACCGCAATGAGACTGACGTCTTTTCATTGGTCAAC
CGGTTAGCGCGGTCAATGCCAATGCAAAAGACACACACTTCATCGATCAA
CGCTTGGGGTGCTTGGGACGGGTCTTGTTCGTAGTCAACGTACGCTCTTC
TTGCTTCATCTTATCAACATCGCGGTAGTGTTCTTCCTTCCCGTTTGCTT
GCAGCGGGTAGCTCGACCGCCACGAAGAAGGCGCAGCATGGGCGTGGCAG
CGGCGGCACCTCCGTCAAGAGAGAAGTGAAGAGAGAGGTCGACACCAACG
TGAAGGTGAGGGACGGGGCCGGCGTCCAGGGAACAAGCGTGGGAGCGAGC
ACCACAAGTCGTTGCCGAGGTCTCGGCGGGGTCGGCGCAGTCCGGGGCTT
GGAGTTATTGCGTTTTCGAGGCGTGTGCGGGGCGTCATTCATGCCTCGCA
ACGATCTCTGCCTGCCTTCTCGGCTACCTACATTTTGAAGCTGGTGGTCT
CAGCGTTGCGTAATGAAGAAATATCCCTCGGAACTTTTTGCACCGAACCA
TGGACATTGTGTGTGTGCGGGCGGCAGTTGAATAGCGGCAGCGGGCGGCA
ACACGCGGAAAGTAGGACGGAGGCAGAGAAAGCGACAGCTCCACAAAGCA
GTACATACAACGCGTGAGGTATCTGAGCCCAGGTTACGCGAAGATGGACT
TGGCGCCTCGACCCCTCGATGCTGCTGTTGGCGGACCTTTGTTTGCTTTC
GTTCATGGCCTGAGAGCAAACAAGTTTTTGCTGGCATGTGTGGCATGTGG
GCCCACGTGTACTTGACGCATCATTGTTGTTGCGTTTGCGGAAGAGCAAC
ACCCCTCCGCGGCACGCCGCTCCTTTCTTCAGCTTTGAGCGAGGGCTAAA
GACATCGGCAAGGACACGGGGCTTTCCTGCAGGAGTCAAGGGAAGCCGAA
GATGACCCTCTGACCCACTGCTGTCCTCTCGCGCGCCGCCGCCCGGAAAT
GATGTAAAGCCTCGTTCTGCGTTCACGTTCAATGAACCTAAACTTTCCAC
ATGTTTCTTGCCAGGTTTCTCATCCCACCCACCCTCTCCACGGTCCGCCA
GTCTTGACTCTGTTGAGAGTGAGGCTTGATTGTACGATCTGCTCTGCGCG
CCCCCCTCCGCCCGCGTTCCTCTATCGTTACTGCTGACTGCTGCTGCCCT
TCTTGCCCCCCCCGCCCCCCCCCCGCGCGCGCGCTTTGTGCCTCGCCGTG
TTCCATGCAACGATGCAGAGCGAAAAAGGTGAACGAGAAGAAGCCGTTCT
CAAGGAGAAGCGCAAGGCGGGGCAGAAGCTCGCCACGCCTCCTCCGGTGA
GGGGAACCCTCGTCGTCTATTTACTAACCACCCTTTTAATCTCCGGTTAC
GTTTCGCCTCCAGTATTGTTTCGAAATTCCTTTGTAGAGTTTCCACACCG
TCCGTAGTCAATGTAGCACACCCAAGTGCTGGTAGGTGCAGGTTTGGTTC
TTGTTCGCGTTAAGTCCTATGGAGGGCGGAGGACCGACGACTGTACATTA
GTACCACGAACTTTTCAGGTGGTGCGGAGCTACCTGTTTCTCGAGATCCT
GTAGTTTTGTAGAGCAGCGAGCTATGCTACGGTACTGGTACTGGTGTCCG
TAGAGAGCTTCAGGGATGTGCCCTCTCCGTATGGACGCGCGAATGGACGC
TTCGTGCCTCGTGATTATTGTGCTGATGCCTCTTCTCGTCTCTTCTCTTT
CTGGTGCTACTGTTGGATTGGGCGTCTTGTGACGTCACCGCGGCGGGCTG
GCAGGGTCAGGCGGATCGCTGTTTCTACGAGACGCTGCTGAAACAAAAGC
CGGAGAGGTAGGTGGGCATGCATGTTTTGCGTTTGTTTCTTTACATGCCA
TCGACCGCGCTCACCGGCTGGCTAAATGATGATTCTCTCGTCTTTTTTGA
AATATACGCGATTTTTTTTTTCTAGTCCGCGGACTTCCGTGGTGTGTGCA
AGTGTGTGTCGTGTTTTGTATGCCTCTCTGTATGTGTGTTCATGGTACTG
GATATTTGCCGTCAGCAGCGGGCGTTTGTATTGGATTTGTTGCTTGTGGC
GGCAGTGGTTAAACTCAAGCATAATCGTCCCGGGCTGTGAAAACAAGCGC
GGGAAAAACGGGCGCTGGGCATCGAACAGCAGCGATGTTGAGTTTCGCGT
TGTAACAACCCCCATGGATCAATACTAGCCATTTTTTTTTTTGCTTGTCA
TATGTCGCCGTTGCTTGTAAATATTTCAACTACCTCACGGTCTTGACTGT
CTGGATTGTCTTTCCCTCCCTTGACTGCCCCACTCACCGCCTTCGCCGTT
CGCTTCCCGATGCCCGGGTGGGCCGAAAAGCCACATGGCGCAGGACTGGT
GTCTGGCGCACGGGGTGTGCGGGGCGGCTGAAGCGGAAGCCCTCTACAAG
AGAGTCTGCAAGAGGAAAGGGCTGCAACCGTTAGCCCACGCGCCGTCGTT
ATCCAATTCCCCCATCAAAAAGGTAATAGCGCGCGCAGACGTTTGGCTGG
AGTGACATTAATCGTGTACCCTTGTTTTTGTCGGCAGCAGACTCTGATAA
TTACCTTATTCATGCGTGGCTCTGACTGGTGCGACAAACAAACCCCAATT
GTAGACCGGTGGGTGGAACCAAAGCCCTCACACACGCCTTGATTTCGCCG
CTGAAGCTGACATCTGTTCATCGATGAGCCGGCTAGCACGGCCCATGCTA
TTACACCTCAATACTCAACACACATCCGCTCGAGAGTGCCGGCAGGCACA
CCGCTTGAGCCTCAGCAACGCGGTAGCTGGAAACAGCATGGGGTTTGGTC
CAGCGTTCATGCAATCCTTGATCCAACGGAGGCGTTGTTTTTGGAACAGC
AGTAGCGGCGCCGGGTTCGTATGCACATTGGCAGCGAGCGTACACAAGCG
TCTGCTATTTCTTCCAGGCCGTACGATATCGAATTTCCGAGGGCGCCTGC
GATGCATAACAGGGAGTGTTCGTGAATGCCTTCGCTGTCCCGGCCGTTGA
GCTCCAACATTTCCGACGGGGTGTGAACTCGTACTTGGGTGCGGCAACCG
GTAGCGGTTTCGTACCGCATGCACGCTTTTCATGTCAATTCGAAAGGTGT
AAAACAGGGTACCTCCCATGCCCGTCTCTACCCTTGACCTTTCTTGACGC
ACACGCGCACGCGCGGATGGGGGTCGTGTTGCTTGGTTCCGCTTCGCAGG
CGAAGCGTTCTTCATCGGGGGGTAAGAGCAGGCCGAGGAGCAGCTTGCCG
AAAGAGATGGACGCGGATACGGGTGGGTGGTAACCATCCCATTTGGCCAT
GTGTACAATCGAATGCTGTATGAACCTCTCATTACGTATAGTTTTTCATT
TTCAGCAGCCCAACCAGCGAAATAGGCCGTCGCCGCGAGCGGTGCGGCTT
TCATGCAGGTGGACGCTAACAGTTGTGTAGTGACCTGTTTCTTGGATGAA
TGTCGTTCTTCGAAGCATGTCGCCTCGTGAGGGTTTGTGTTGTCTCGGTT
GCTTCGGTTGTCTGTGCGTAAGAGAAAGTAGTTTCAAGACACGTAAAGGA
AAGCAGCCCATGAATTGCGGTCACTTTTGATGCATTTTTTTCCCTTTGAA
GATTCTGGCGCAAAGTCACGTGGCCTTAGACGGGCGTTGGTGGGGCATCA
TCTTGACGCCCGCAAGTGCCTACCATATGCGTGGAACCTTTTCTTTGGAC
TGAAAATTTAATCGCCGTGTGCCCTATTGTGTGACTGCGCAGTCCTCCCC
CCCCCCACCCCTCCTCCCCCTCTTGTGGCGATGTCCAGGTTTCGAAGCAA
GTGGCGTTTTCGAGGGAGTTGGCACGACAGGATTTTAATCGGTCGGGGCT
ACGCATCTTCTGTAGTTTTTTCCTTTTCCGTGTTCGCGCTTAGGTTTTTA
TTAATGAATACTTCCAATGTGCGTGCGTGTGCTGTGTGCATTTGCCAGCT
GTCTGTACTCGACCACCTGCCGGAAGAACTGCCGCGCTCCACGTGAGGCG
TACTGGGTTGGTTGGGTCTTGTGCGTTAGACCCACCGTCTCTGGATGGAG
GATGGTGTCAGCAGGACGTACATGTGTTGACGGCCACGGCGCTGTCTCCA
TTTAGACCTCAAACGACCCCGGCAGGATATATGTTTGGGAGGCATGGCAC
GGATATTCGAAAGATCAGCCGTACTTCGGAAATTCAGGGCGGTGCGGCGT
CGTCCCGGCCGGCGGCCTGGGCGGTAAAGCGGCAGGGCGTCTGGTAGTAA
CAATAAGAAGAAGCAATGAGAGAGAGAGAGAGAGCAATATTGCAAGACTC
CCGGTCTGAAGGGCGACGGTGCACTGCTACCGCTGTTGCTGTTCCAAGAT
GTTCACGCCGCGAATGCATGCGTCCTTCTCCGGAGAGAACTGTTGACGGC
GATTCTGCGCGGAAAAAAATTGCCGGTGACAAGAGAAAACGATTTCCACA
TCGCCGTATTTGCGT
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Coding sequence (CDS) from alignment at Scaffold_627:575169..581183-

>EsuBft101_12a-0001 ID=EsuBft101_12a-0001|Name=EsuBft101_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=525bp|location=Sequence derived from alignment at Scaffold_627:575169..581183- (Ectocarpus subulatus male Bft15b)
ATGACGAAGGACTCCCCCAAAAAGTCAGCGGGTAGCTCGACCGCCACGAA
GAAGGCGCAGCATGGGCGTGGCAGCGGCGGCACCTCCGTCAAGAGAGAAG
TGAAGAGAGAGGTCGACACCAACGTGAAGAGCGAAAAAGGTGAACGAGAA
GAAGCCGTTCTCAAGGAGAAGCGCAAGGCGGGGCAGAAGCTCGCCACGCC
TCCTCCGGGTCAGGCGGATCGCTGTTTCTACGAGACGCTGCTGAAACAAA
AGCCGGAGAGCCACATGGCGCAGGACTGGTGTCTGGCGCACGGGGTGTGC
GGGGCGGCTGAAGCGGAAGCCCTCTACAAGAGAGTCTGCAAGAGGAAAGG
GCTGCAACCGTTAGCCCACGCGCCGTCGTTATCCAATTCCCCCATCAAAA
AGGCGAAGCGTTCTTCATCGGGGGGTAAGAGCAGGCCGAGGAGCAGCTTG
CCGAAAGAGATGGACGCGGATACGGGTTTCGAAGCAAGTGGCGTTTTCGA
GGGAGTTGGCACGACAGGATTTTAA
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