EsuBft101_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft101_10a-0001
Unique NameEsuBft101_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:566347..567126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft101_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length78
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft101_10aEsuBft101_10aEctocarpus subulatus male Bft15bgeneScaffold_627 566347..567126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_10a-0001-exonEsuBft101_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 566347..567126 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_10a-0001-exonagat-five_prime_utr-117Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 566347..566433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_10a-0001-cdsEsuBft101_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 566434..566694 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_10a-0001-exonagat-three_prime_utr-202Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 566695..567126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_10a-0001EsuBft101_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 566434..566694 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft101_10a-0001 ID=EsuBft101_10a-0001|Name=EsuBft101_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=780bp|location=Sequence derived from alignment at Scaffold_627:566347..567126+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGGAGCGATGGCGGGGAGCGTGGGATACCGGGGCGGATAGAGAGCGACTG
GGTGTCTCGTGTAGGAGAGGACCTCGTGGCCTTCAACATGGAAGACGAAG
AGGAAGGGGGTCAATGGAAAGAGAGCGCCAAGGATCCGGAGGTGTGGTAC
AACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAACTGGCACAGGCA
GGAAGCGGAAGCGTTCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAAGAA
GCAGAGAGTACGGCCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGC
GGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGG
CGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTTGC
GCCCTGTTCCCCTCCCTGCTGTATGCTATACTCCTTTATGTATGTCCTTT
GTATTGCCTTCGGCCTCTGTGCTGTGTTCCTGTGTTTCTTTTTTTATTAC
CTCCCTGCCTACTCTGCTGTGTTGGGTACCGTGATCTCGCTTTGCTGTTG
CCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATTTGCCGCCTCTTTGTCC
TGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTAGGGCCTGGTGCTGGCA
CGTTACCCTTTGATTTTTTCTTTGGGCGGATGTGGAAAGCGTCCTCCTTT
ATTTTCGTTTTTGTTTTATTTTGATCGGTTTCCGAGGGCTCTTTTCTCGA
ACGGTCGGTGCGATACCTGTTCTTTTCTTT
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protein sequence of EsuBft101_10a-0001

>EsuBft101_10 ID=EsuBft101_10|Name=EsuBft101_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MEDEEEGGQWKESAKDPEVWYNKVEDGAAWFMRNWHRQEAEAFAKRQRAR
EAERSREYGLRTEEKESRGSGGGGEETATGHCCRSE
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mRNA from alignment at Scaffold_627:566347..567126+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft101_10a-0001 ID=EsuBft101_10a-0001|Name=EsuBft101_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=780bp|location=Sequence derived from alignment at Scaffold_627:566347..567126+ (Ectocarpus subulatus male Bft15b)
AGGAGCGATGGCGGGGAGCGTGGGATACCGGGGCGGATAGAGAGCGACTG
GGTGTCTCGTGTAGGAGAGGACCTCGTGGCCTTCAACATGGAAGACGAAG
AGGAAGGGGGTCAATGGAAAGAGAGCGCCAAGGATCCGGAGGTGTGGTAC
AACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAACTGGCACAGGCA
GGAAGCGGAAGCGTTCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAAGAA
GCAGAGAGTACGGCCTCAGGACCGAAGAGAAAGAGAGCCGGGGAAGCGGC
GGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGG
CGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGCTGATGTTGTTGC
GCCCTGTTCCCCTCCCTGCTGTATGCTATACTCCTTTATGTATGTCCTTT
GTATTGCCTTCGGCCTCTGTGCTGTGTTCCTGTGTTTCTTTTTTTATTAC
CTCCCTGCCTACTCTGCTGTGTTGGGTACCGTGATCTCGCTTTGCTGTTG
CCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATTTGCCGCCTCTTTGTCC
TGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTAGGGCCTGGTGCTGGCA
CGTTACCCTTTGATTTTTTCTTTGGGCGGATGTGGAAAGCGTCCTCCTTT
ATTTTCGTTTTTGTTTTATTTTGATCGGTTTCCGAGGGCTCTTTTCTCGA
ACGGTCGGTGCGATACCTGTTCTTTTCTTT
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Coding sequence (CDS) from alignment at Scaffold_627:566347..567126+

>EsuBft101_10a-0001 ID=EsuBft101_10a-0001|Name=EsuBft101_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_627:566347..567126+ (Ectocarpus subulatus male Bft15b)
ATGGAAGACGAAGAGGAAGGGGGTCAATGGAAAGAGAGCGCCAAGGATCC
GGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGA
ACTGGCACAGGCAGGAAGCGGAAGCGTTCGCGAAGCGCCAGCGCGCGAGG
GAAGCAGAAAGAAGCAGAGAGTACGGCCTCAGGACCGAAGAGAAAGAGAG
CCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTA
GAAGCGAGTAG
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