Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft101_4 |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-TM |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 86 |
| Hectar predicted targeting category | signal peptide |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft101_4a-0001 ID=EsuBft101_4a-0001|Name=EsuBft101_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=861bp|location=Sequence derived from alignment at Scaffold_627:474604..476269- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGATGGTGGTAGCGGTGGCGATGATGGTGGTAGTGGCGGTGGTGAT
GGTAGTAACGAAGATTGTGTTGGGCCGGATGATGGCTTCGATTCTTCTTA
TGAATGCGTCGGTGCCGCCGCCGTCTCTTGGCCGCGTACAGTGGCACCGG
AACAGGAGACCCTGGGGGCGGGGGCGTATCGCCGAGGCGTGCTGGCAATG
CCCGATCTGCCAAGGCGTCGCCCGCCGAGGACGGGGCGGGGGCCCGAGAC
GTATCGGTGGCGCCACCACCTCGGGCCCTGAGAGTGGCTCTAAGGCCCTC
CAATGGGCGAAGATAGTCAGCGCGAAAAATGCTGCAAGCAGCGCTGAACA
GTCGGCATTGGTCTCCCGTCCTCCGAGACGGCATCGTAATGACCGGGCAG
GTAGCAGAAACTGTGTTACGGAAAAACCTGGGGTCAGGGGCGCGAACTGC
AACCGAGAACCCCGCGATACGAGCGGCAATGTATGTCGCGGCCGAATTGG
GGCTTGTCGTGGACGCGGCAACAGTAAGAGTGCCGCGGGAGGTAGGAGGG
GGGGTGAAGCAGAGAGCCTCGAGAGGGGGGAAACCCAACGCGGGCCAGGA
ACGTCTGCTACCAGGAACAGCGAGGTGAAAGAGCCAAGTGGGACAACGTC
TATTGTGGGTGATGACAGCTACTCGGGCAATTCTTTCGCTACTGACGATG
ATACCGAGAACATATGCCTCGAAGACGGAGAAGAAGGCCCCGAAAGCAGA
GCTTCGAGAACCGAAGAGCTCCGGGTCAGCGGTATCCGAACCGAAGACGA
CGACGCGACGGTCGGAGCCATCCCAAGCACGGTTGTCGAGACGGGACGAA
GTATTGATTAG back to topprotein sequence of EsuBft101_4a-0001 >EsuBft101_4 ID=EsuBft101_4|Name=EsuBft101_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=286bp
MQMVVAVAMMVVVAVVMVVTKIVLGRMMASILLMNASVPPPSLGRVQWHR
NRRPWGRGRIAEACWQCPICQGVARRGRGGGPRRIGGATTSGPESGSKAL
QWAKIVSAKNAASSAEQSALVSRPPRRHRNDRAGSRNCVTEKPGVRGANC
NREPRDTSGNVCRGRIGACRGRGNSKSAAGGRRGGEAESLERGETQRGPG
TSATRNSEVKEPSGTTSIVGDDSYSGNSFATDDDTENICLEDGEEGPESR
ASRTEELRVSGIRTEDDDATVGAIPSTVVETGRSID back to topmRNA from alignment at Scaffold_627:474604..476269- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft101_4a-0001 ID=EsuBft101_4a-0001|Name=EsuBft101_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1666bp|location=Sequence derived from alignment at Scaffold_627:474604..476269- (Ectocarpus subulatus male Bft15b)
ATGCAGATGGTGGTAGCGGTGGCGATGATGGTGGTAGTGGCGGTGGTGAT
GGTAGTAACGAAGATTGTGTTGGGCCGGATGATGGCTTCGATTCTTCTTA
TGAATGCGTCGGTGCCGGTGAAACTAAAGCAATGAATACTTGGCAAGACG
AACGTGAAAGACACATACAAACACGGCACGAACACAAGCAACAACGGCAG
CGGCACCGGCAGCAGGAACATCAGCCAGAACACCATTGTGGCTGCAAAGA
CAACATGGGTATCACTGGGTGGAACTTCTACGACCGATCTAATATTGCGT
TCCGCAGCCGCCGTCTCTTGGCCGCGTACAGTGGCACCGGAACAGGAGAC
CCTGGGGGCGGGGGCGTATCGCCGAGGCGTGCTGGCAATGCCCGATCTGC
CAAGGTGACTCGTTGTCGATATGCGTAAAAGGTTCTCAGCAGTGAAATGT
CGACACCTACATCCTGGTCACACGGTCGTACGGGGGGATATTTATACTTG
CGCACGGTAACTCGCTTGAGTCGAAGGTTGTGCTCCGAAGTGATCGTTTT
TCCTCCAAAAATGTAGAATAGTCACTGCAAAAGACCAAGAAACATCGGTA
CGTGGGAATGTCTCGATACGTCGTCTTCTGGCCAATATTGACATCCTTAG
CTGCCTTTCCACACCAATGTCTACCTCTCCGTTAGTTCGTGTGATTGAAC
ATCATCGATCCGTATTCCATGGTAGTGGTAAATAGTGTGCCATCCCAATA
CTGGGAATCGGCAATGTAATCCTTTCCCGGTTATCGAACCCACATGCATT
GCTTTCAGTGATAGTGCACGACGAACGTTCTAATTGCTCAAACGTTATCA
ATTGCAAAGTTTCATCACCCCCCTCCCCTCGTGCGTTTCTACCGCCGCGG
TGATCCTCGACAGTCAGCAACACCCATGCGTGAACATAGTCAGCAGCAGT
CGCACTCTCCTACGGCGCGTGCCCCTCGTGTTTCACACTCTGCACGGCCA
CGAGCACTAGCACCGGCAGGCGTCGCCCGCCGAGGACGGGGCGGGGGCCC
GAGACGTATCGGTGGCGCCACCACCTCGGGCCCTGAGAGTGGCTCTAAGG
CCCTCCAATGGGCGAAGATAGTCAGCGCGAAAAATGCTGCAAGCAGCGCT
GAACAGTCGGCATTGGTCTCCCGTCCTCCGAGACGGCATCGTAATGACCG
GGCAGGTAGCAGAAACTGTGTTACGGAAAAACCTGGGGTCAGGGGCGCGA
ACTGCAACCGAGAACCCCGCGATACGAGCGGCAATGTATGTCGCGGCCGA
ATTGGGGCTTGTCGTGGACGCGGCAACAGTAAGAGTGCCGCGGGAGGTAG
GAGGGGGGGTGAAGCAGAGAGCCTCGAGAGGGGGGAAACCCAACGCGGGC
CAGGAACGTCTGCTACCAGGAACAGCGAGGTGAAAGAGCCAAGTGGGACA
ACGTCTATTGTGGGTGATGACAGCTACTCGGGCAATTCTTTCGCTACTGA
CGATGATACCGAGAACATATGCCTCGAAGACGGAGAAGAAGGCCCCGAAA
GCAGAGCTTCGAGAACCGAAGAGCTCCGGGTCAGCGGTATCCGAACCGAA
GACGACGACGCGACGGTCGGAGCCATCCCAAGCACGGTTGTCGAGACGGG
ACGAAGTATTGATTAG back to topCoding sequence (CDS) from alignment at Scaffold_627:474604..476269- >EsuBft101_4a-0001 ID=EsuBft101_4a-0001|Name=EsuBft101_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=861bp|location=Sequence derived from alignment at Scaffold_627:474604..476269- (Ectocarpus subulatus male Bft15b)
ATGCAGATGGTGGTAGCGGTGGCGATGATGGTGGTAGTGGCGGTGGTGAT
GGTAGTAACGAAGATTGTGTTGGGCCGGATGATGGCTTCGATTCTTCTTA
TGAATGCGTCGGTGCCGCCGCCGTCTCTTGGCCGCGTACAGTGGCACCGG
AACAGGAGACCCTGGGGGCGGGGGCGTATCGCCGAGGCGTGCTGGCAATG
CCCGATCTGCCAAGGCGTCGCCCGCCGAGGACGGGGCGGGGGCCCGAGAC
GTATCGGTGGCGCCACCACCTCGGGCCCTGAGAGTGGCTCTAAGGCCCTC
CAATGGGCGAAGATAGTCAGCGCGAAAAATGCTGCAAGCAGCGCTGAACA
GTCGGCATTGGTCTCCCGTCCTCCGAGACGGCATCGTAATGACCGGGCAG
GTAGCAGAAACTGTGTTACGGAAAAACCTGGGGTCAGGGGCGCGAACTGC
AACCGAGAACCCCGCGATACGAGCGGCAATGTATGTCGCGGCCGAATTGG
GGCTTGTCGTGGACGCGGCAACAGTAAGAGTGCCGCGGGAGGTAGGAGGG
GGGGTGAAGCAGAGAGCCTCGAGAGGGGGGAAACCCAACGCGGGCCAGGA
ACGTCTGCTACCAGGAACAGCGAGGTGAAAGAGCCAAGTGGGACAACGTC
TATTGTGGGTGATGACAGCTACTCGGGCAATTCTTTCGCTACTGACGATG
ATACCGAGAACATATGCCTCGAAGACGGAGAAGAAGGCCCCGAAAGCAGA
GCTTCGAGAACCGAAGAGCTCCGGGTCAGCGGTATCCGAACCGAAGACGA
CGACGCGACGGTCGGAGCCATCCCAAGCACGGTTGTCGAGACGGGACGAA
GTATTGATTAG back to top
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