Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 159749.K0S0Q9 |
| ProteomeId | EsuBft101_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 84 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.51e-06 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Plant transposon protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft101_2a-0001 ID=EsuBft101_2a-0001|Name=EsuBft101_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=840bp|location=Sequence derived from alignment at Scaffold_627:452143..452982+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCGTGTACGCGGGGCTTTCCCGGCGCCGACAACGACAAGACCATCGT
GAGGTTCGACAAGTTCGCCAACTCGGTTCGAGACGGGTGGTACAAGGACG
TGGAGTACACTCTGAAGGGCAAAGACGGGGAGGACGTGCGCGAGAAAGGG
CCATTGTTGATCTTGGACGGTGGATACTACTACGTGAGTGCATCGTATTC
GTAGTTCAGGCAGTTGATGGTATAGAGTGGCGCCGGAGTTGATGTCCCGT
CGTGTTCGTGAGGATACGAGCCGCCGTTGGGCAGAGCAGCTGGCGTGTTC
TAAAGATGGTTGAACACACGCGTGCTGTTTGATGTTGGTACTGCAGTATT
GCGGACGGACCAATCGGTGGTCACCTGTTCGACCCAGCTGCTCCGCTCTT
CCGAAAATGCCTTCTTGTTTTGGGCCGTCTGGTTCTTTTTTTTTTGGGGG
GGGGGGGGGAATGGATGTGTTTCTTTGTATTGCAGACGACGTTCATGTAC
GATCAGTGTTCAGTGTGTTGACGTACTCCGATCGCCCCCCACCAACCATG
GTAAGGTGGGTTCGTCGTGGCCGCAAGAGAGCGCCCATGTTTCATTCACC
CTCTTGCTTCCACCGTCATGGGAGATGTTCCCGCGGTGCCATCACCTCCA
AATATGTTGCGCGAGCCACGTGCCTTGCTACAGGCATGTTGACGAGTGTT
ACAGGCATGTTGGCGAGTGGTCCTGTTAGCGTTCCTCGTCGTCTCACGGG
ATGTAAAATTGACTCCTTGGCTTGCCGTCGTCGCGTGTCTCCTTTGACAT
CAGTGCTACACCCACCACAACATAACTCACGCCCACACCC back to topprotein sequence of EsuBft101_2a-0001 >EsuBft101_2 ID=EsuBft101_2|Name=EsuBft101_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MSCTRGFPGADNDKTIVRFDKFANSVRDGWYKDVEYTLKGKDGEDVREKG
PLLILDGGYYYVSASYS back to topmRNA from alignment at Scaffold_627:452143..452982+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft101_2a-0001 ID=EsuBft101_2a-0001|Name=EsuBft101_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=840bp|location=Sequence derived from alignment at Scaffold_627:452143..452982+ (Ectocarpus subulatus male Bft15b)
ATGTCGTGTACGCGGGGCTTTCCCGGCGCCGACAACGACAAGACCATCGT
GAGGTTCGACAAGTTCGCCAACTCGGTTCGAGACGGGTGGTACAAGGACG
TGGAGTACACTCTGAAGGGCAAAGACGGGGAGGACGTGCGCGAGAAAGGG
CCATTGTTGATCTTGGACGGTGGATACTACTACGTGAGTGCATCGTATTC
GTAGTTCAGGCAGTTGATGGTATAGAGTGGCGCCGGAGTTGATGTCCCGT
CGTGTTCGTGAGGATACGAGCCGCCGTTGGGCAGAGCAGCTGGCGTGTTC
TAAAGATGGTTGAACACACGCGTGCTGTTTGATGTTGGTACTGCAGTATT
GCGGACGGACCAATCGGTGGTCACCTGTTCGACCCAGCTGCTCCGCTCTT
CCGAAAATGCCTTCTTGTTTTGGGCCGTCTGGTTCTTTTTTTTTTGGGGG
GGGGGGGGGAATGGATGTGTTTCTTTGTATTGCAGACGACGTTCATGTAC
GATCAGTGTTCAGTGTGTTGACGTACTCCGATCGCCCCCCACCAACCATG
GTAAGGTGGGTTCGTCGTGGCCGCAAGAGAGCGCCCATGTTTCATTCACC
CTCTTGCTTCCACCGTCATGGGAGATGTTCCCGCGGTGCCATCACCTCCA
AATATGTTGCGCGAGCCACGTGCCTTGCTACAGGCATGTTGACGAGTGTT
ACAGGCATGTTGGCGAGTGGTCCTGTTAGCGTTCCTCGTCGTCTCACGGG
ATGTAAAATTGACTCCTTGGCTTGCCGTCGTCGCGTGTCTCCTTTGACAT
CAGTGCTACACCCACCACAACATAACTCACGCCCACACCC back to topCoding sequence (CDS) from alignment at Scaffold_627:452143..452982+ >EsuBft101_2a-0001 ID=EsuBft101_2a-0001|Name=EsuBft101_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_627:452143..452982+ (Ectocarpus subulatus male Bft15b)
ATGTCGTGTACGCGGGGCTTTCCCGGCGCCGACAACGACAAGACCATCGT
GAGGTTCGACAAGTTCGCCAACTCGGTTCGAGACGGGTGGTACAAGGACG
TGGAGTACACTCTGAAGGGCAAAGACGGGGAGGACGTGCGCGAGAAAGGG
CCATTGTTGATCTTGGACGGTGGATACTACTACGTGAGTGCATCGTATTC
GTAG back to top
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