EsuBft538_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft538_7a-0001
Unique NameEsuBft538_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:393905..394495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft538_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length59
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft538_7aEsuBft538_7aEctocarpus subulatus male Bft15bgeneScaffold_627 393905..394495 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft538_7a-0001-exonEsuBft538_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 393905..394495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft538_7a-0001-cdsEsuBft538_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 393905..394099 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft538_7a-0001-exonagat-three_prime_utr-18018Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 394100..394495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft538_7a-0001EsuBft538_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 393905..394099 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft538_7a-0001 ID=EsuBft538_7a-0001|Name=EsuBft538_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=591bp|location=Sequence derived from alignment at Scaffold_627:393905..394495+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTGGCCCTTAGCAGGCTGCGAGGCTACCCACCAGACCACCGGGGC
GACCGGAGTGTGTTCTACATTGGATCTCCACGGACTCATTCTGACAGCAC
TTCAGACAGCAGCTGCATGCCCCGCCAGCTTCTTGTTCCATGCCTACCAT
GGTGTTTTTGTACAGACAGCACTTCAGACAGCAAGTATGCTGTAGTCGGC
AATCATTCGTTTTGGTNTGACAGCACTTCAGACAGCAGCTGCATGCCCCG
AGCTTGTGTACCATGCACCATGGTGTTAATTTTGTACAGACAGCACTTCA
AACAGCAGTACGCTGTAGTCGACAAACATTCATTTTGGTTGAATGCGGGA
CAAGTAAGGGCTGCTGTAGTCGAATTGAAGTGTGTGGGCGTGTAGTTCAG
TTGTGAGCATGCAAACGTGCTGCAGGGATTGCAGGTGTACCTCCTCGGGC
TTGCGTACCATTTTTCTTGCTAATAGTGTGTGTGTTCTTTAGATCTTCTG
ATGGCTCTAGCATTTTTGTGACCACGGACCGAGTCTTTGCCTTATTTTGG
GATTAGCAACTGACACGAGTTCAATGTGAAGAAAAACAACA
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protein sequence of EsuBft538_7a-0001

>EsuBft538_7 ID=EsuBft538_7|Name=EsuBft538_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=64bp
MTWPLAGCEATHQTTGATGVCSTLDLHGLILTALQTAAACPASFLFHAYH
GVFVQTALQTASML
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mRNA from alignment at Scaffold_627:393905..394495+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft538_7a-0001 ID=EsuBft538_7a-0001|Name=EsuBft538_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=591bp|location=Sequence derived from alignment at Scaffold_627:393905..394495+ (Ectocarpus subulatus male Bft15b)
ATGACCTGGCCCTTAGCAGGCTGCGAGGCTACCCACCAGACCACCGGGGC
GACCGGAGTGTGTTCTACATTGGATCTCCACGGACTCATTCTGACAGCAC
TTCAGACAGCAGCTGCATGCCCCGCCAGCTTCTTGTTCCATGCCTACCAT
GGTGTTTTTGTACAGACAGCACTTCAGACAGCAAGTATGCTGTAGTCGGC
AATCATTCGTTTTGGTNTGACAGCACTTCAGACAGCAGCTGCATGCCCCG
AGCTTGTGTACCATGCACCATGGTGTTAATTTTGTACAGACAGCACTTCA
AACAGCAGTACGCTGTAGTCGACAAACATTCATTTTGGTTGAATGCGGGA
CAAGTAAGGGCTGCTGTAGTCGAATTGAAGTGTGTGGGCGTGTAGTTCAG
TTGTGAGCATGCAAACGTGCTGCAGGGATTGCAGGTGTACCTCCTCGGGC
TTGCGTACCATTTTTCTTGCTAATAGTGTGTGTGTTCTTTAGATCTTCTG
ATGGCTCTAGCATTTTTGTGACCACGGACCGAGTCTTTGCCTTATTTTGG
GATTAGCAACTGACACGAGTTCAATGTGAAGAAAAACAACA
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Coding sequence (CDS) from alignment at Scaffold_627:393905..394495+

>EsuBft538_7a-0001 ID=EsuBft538_7a-0001|Name=EsuBft538_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=195bp|location=Sequence derived from alignment at Scaffold_627:393905..394495+ (Ectocarpus subulatus male Bft15b)
ATGACCTGGCCCTTAGCAGGCTGCGAGGCTACCCACCAGACCACCGGGGC
GACCGGAGTGTGTTCTACATTGGATCTCCACGGACTCATTCTGACAGCAC
TTCAGACAGCAGCTGCATGCCCCGCCAGCTTCTTGTTCCATGCCTACCAT
GGTGTTTTTGTACAGACAGCACTTCAGACAGCAAGTATGCTGTAG
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