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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7FLY2 |
| ProteomeId | EsuBft1060_3 |
| Protein domains | PTHR22306 |
| Protein domains | IPR019327 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | Uncharacterized protein C7orf50 homolog OS:Mus musculus PE:1 SV:3 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1943 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.96e-148 |
| EggNOG OGs | KOG4829@1|root,KOG4829@2759|Eukaryota |
| Ec32 ortholog description | Protein of unknown function DUF2373 |
| Ec32 ortholog | Ec-22_000160.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | C7orf50 |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013 |
| Description | Uncharacterised conserved protein (DUF2373) |
| COG category | J |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0005622 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1060_3a-0001 ID=EsuBft1060_3a-0001|Name=EsuBft1060_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1943bp|location=Sequence derived from alignment at Scaffold_623:57479..63570- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CTCGCTCGCTCCTTTCCGTACTATCCCTGAAGTGATCCCGCTGATACAAA CGATAGTACTGCTGTAGCTTGATTCCAGCACATCAACTCCTGTCAATTAA CGAAGCGAACATCATGGCGAAGAAGAAGAAAAGCACGAAAAAGAAGAAGC GTGTGGCGGTGCACATCAGGGAGAACATCAAGGGCAAGAGAGAGGCCGCC GCCTCTGCGGATGGGGAAGTCGGTGCCGACAAGCGAGCGCCCCTGCTGGC AGCCCCTTTGGGCGTAGGGAAGCCGAAGCGTCCTCGAGAGCCAGCAAACG ATGCAGCGTCACTGGGGAAGGCCAAAGACGACCCTGCCCGCAAAGAAAAA GAGCGTACTGACGCGAACAACTATCTCGCGGGATGGCTGGCCGTACGCAA GGCGAAAGAGGCCGCCGAAGAGGCGGGAGTTGCACCGCCTCCCGCAACAG GCGTGTGGAAGTTCAACAAGAACACACAGGCCTGGCTACTTCGGCATGTC TTCTCTGATGATCAGATCGACGACAAGAGGTTTGAGACTCTCTGCCTGTA TCTCGAAGGCCTCAAGGGAGCTGGCCGACAGGCGAGGGCGCGGGTGCTGG CCGCCGCACAAGCGATCATCGACAAGCACGGCCCCGATGAGGGGAAGGAG CAAACGGCGGTGGAACGCGAGGCAGCGGCAGCGGAAGTCGCGACGGCTGA CGACGAAACCGTCACGAACGAAACGGCAGCGGTTGTCCCGAGCGGGTACA ACAGCGATTCCACCGACGACGAGGCGGAGGATAATGATGGCGGCGCTTTT GCGGTGGAACAGCAGGCGGGAGGGGAAGGGGGGGTAGCGGCGTTAACCCC GGCGGCGACAAAAGCAGGCAATGCGGGGGAATTCTCTTTCGGGTTCTTTG ATGGCACCGCTGAGGAGGCGACCTCCAAGACGGCGGCGAAGGAGGAATCA GATAGCGATGGTAGCAGCAGCAGCAGCGATGACGAAGAGGGTGGCGACGG TGGAGGTGCGGTGGAAGACCTGTCGCCCGCAACCAAGAAGCCGAGGAAAG CCCGATCAGCCTTGACCGGCAAGTCTAAGGCGGAGGCAAAGGCTAAGGCT GCCGCGGTGGCGTACGAGAGGGCCCTCCAGGTAGCAGAAGTGCTCGCCTA GAGGCACTCGTCGTACCAGTGGTAGCGTTCGCAACCCGTACAACTCGCCA TGTAGGCGGCCGAAACTCTCTACTACAACTCGCCACGTAAGCGGTCGAAA CTCTCGATACAGAGGTTAGCGCCCGCACTCTAGAACCACTTGTGGTCATG CTACGAATGGACGCCGTATAGGTTGTAATGTAGGGGCTCTTACCCGAGCT CACAGATGGTCCTCAAAGTTCTTAGATTTTTAGTTGTTTCGAGGTTCTAT TGGTTCACTGCGAAGTTGTCAAGTGACGGCGCCAACTCCAAAGTAGTGAT CTGCGAGAGCACCAGCTACTATGTTACTGCAATATCTGCATTTGTACCCC TCACACAGACTGCCACAGTCGACTCTGAGCAAACGTGCAAGTGACGCTCA TTTCGTGCTGGCTTCCGCCTGTGGCGTGCTCTGGCGTTGTGGGTGCAAGT TGTGTGCTACCTGTCCGTGATTGGTGTGTGCCGATGAGGAGGTGTGGTGT GGCTGTTACCGCTCTGCTTTGTTTGCAAGGACGAATATGTAGTAGTCGTT GGTCTCCTACTTGCGACGCCTATGTATCATAGGTGAAGCCCATTTCTGTA CATGTCAGTCTTTTGTTGAAATTCGCGATGCATGTGGCTGGTATCATATG GCATCAGGTCTGAAGTAGCTTTGCGTCTTTCACGCACATGCGAGAAAACT TGTTGGTGTACAATAAGCTAAACGCACGAAGTGGTCCCATTTCTGGTGTC TGCCCTTCTTGATGTGCAAAAGCAGACACATGGCAGTCCTGGT back to topprotein sequence of EsuBft1060_3a-0001 >EsuBft1060_3 ID=EsuBft1060_3|Name=EsuBft1060_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=345bp
MAKKKKSTKKKKRVAVHIRENIKGKREAAASADGEVGADKRAPLLAAPLG VGKPKRPREPANDAASLGKAKDDPARKEKERTDANNYLAGWLAVRKAKEA AEEAGVAPPPATGVWKFNKNTQAWLLRHVFSDDQIDDKRFETLCLYLEGL KGAGRQARARVLAAAQAIIDKHGPDEGKEQTAVEREAAAAEVATADDETV TNETAAVVPSGYNSDSTDDEAEDNDGGAFAVEQQAGGEGGVAALTPAATK AGNAGEFSFGFFDGTAEEATSKTAAKEESDSDGSSSSSDDEEGGDGGGAV EDLSPATKKPRKARSALTGKSKAEAKAKAAAVAYERALQVAEVLA back to topmRNA from alignment at Scaffold_623:57479..63570- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1060_3a-0001 ID=EsuBft1060_3a-0001|Name=EsuBft1060_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6092bp|location=Sequence derived from alignment at Scaffold_623:57479..63570- (Ectocarpus subulatus male Bft15b) CTCGCTCGCTCCTTTCCGTACTATCCCTGAAGTGATCCCGCTGATACAAA
CGATAGTACTGCTGTAGCTTGATTCCAGCACATCAACTCCTGTCAATTAA
CGAAGCGAACATCATGGCGAAGAAGAAGAAAAGCACGAAAAAGAAGAAGC
GTGTGGCGGTGCACATCAGGGAGAACATCAAGGGCAAGAGAGAGGCCGCC
GCCTCTGCGGATGGGGAAGTCGGTGCCGACAAGCGAGCGCCCCTGCTGGC
AGCCCCTTTGGGCGTAGGGAAGCCGAAGCGTCCTCGAGAGCCAGGTGAGA
GCTGCTGGTGCTGCTGTTTACTCGGTTTCTTGGCAAGCAGTACTGCTGTG
GAGCTGTAGTGTGAGTACAAATACAAGAAGTAGCTGCCATTGAAGGCGTG
TGGTCGTGTGGGTCGTCTCCCTCTGTTCGTTTGCAAGGAGATTACTCGTG
TACATCACCGCAGGAGCAAAATGAGGTACAGCAGTACACCACGACTGAAG
TGGATGGTGCGGTGCTCCCTAATGGACCACCAACGTGCCTATCGCGAAAA
GCAGACGAACGGTGTGATGAGACAGGACCTGCCTCGTGAGGTAGCCGAAC
AGAAGGCGGAGATTCGTAGCACTACACTACACTCAGATATACGGCCACCC
TGTGGTCGCGGGGAGTCGGTCGAAAGCTTACCTCGGAGTTCACACATCAG
ACTGGGTACCTGCCTACACATACGCTTTCGATGCAAATGACACCACTTGC
CGATTTCGAATCGCCGCTGTTGTGCCTATGAACACTTTCCTCGACGGTGA
CTAGACCACCCATTTGCCTGTGTATTTATATGTACCGTATATGACACAAG
ATAACACACCCCCTTGACCAATTTTCGGAGCTCGATTTCTCAACTGCAGG
AACAGTCACAGCGCCGAAAACGGCGGCGTTGAAACCGTCTTGTCCAGAGC
TTTTCGAAAATGTATCGTTTCGTTTATGCATCCTCTTCGTCGTGGAGGAA
TCGAGCTTTGAAAATCGGTCCAGGGGGGTGTGTTATCTTGTGTCATATAC
GGTAGGCTGGTTCATGATGATGCGTAGCCCAGCGTGTAGCCCAACGCGCC
GCTCGTCGCTCCCCCGATTCCGTCCCGAATGCCCGGCATACTTGGCCCTT
TACCCTCGTGCGCCGCACGGACGACATCGTGTCTGATGGCATGTTGAACC
ATTGCCTCCCCTCCTGCTGTACAACCGCTGCCGCCGTTTGTGACTGCTGT
TGGTACTGTTAGCAAACGATGCAGCGTCACTGGGGAAGGCCAAAGACGAC
CCTGCCCGCAAAGAAAAAGAGCGTACTGACGCGAACAACTATCTCGCGGT
GAGTGCGTCGCGCTTTCCTACCAACACCGTCCAATCGTTTCGTGCACATC
GGGTTGTACTGGTGTAGGTTGAAAAAGAGGAGTTCAATGCTACACCCCCT
CGACCGGTTTTCAAAGCTCGATCACCGGAAGAGGCGAAGAGATCGCCCCC
CCCCCCCCTTGACCCACTTTCAAAGTCCGGTTGCTCCACACCAAGCTTGT
GCCAACACCAAAAATTGTGGGTTTGGAATTCATCTTATCGAGAACTAGCC
GTAGAAGTATCGGACTCGTTCCGCGCCCCCTCGGTCGTGATGCAATCTAC
CTTTGAAAGTCGGTGTAGGGGAGGTGCCATCTTTCCGCCTCTCCGGAATA
TCACGGTACGGTAAAGACAATCTTGGTCGTGGAGTAATCGAGCTTTGAAA
GTCGATCTGGGGGAGGTGCCATCTCTCCGACTCTTACGGTACTCTGCAGA
AAACACATCGCTGGTGCCGAAAGTGGCGGCGTTGGAACCGTCTCGTCGAG
AGATAGCTTTCCGAAAACGTTTCGTTTGATCTTGGCATCCTCTTCGTCGT
GGAGTAGTCAAAGCTTTGAAAATCTGTCCTGGGTGCGTGGTGTCTTGAGC
AACGTAGGTTAACACACTTCTGAAGCTTGGGTACGTCTCGACTTGTACTG
CCCCGCTTTGGTGGGTTCGCCAAGGATTTTGTTCTGGCAGCTCCGAAGCG
TGAATGTTAGACAACAGTGGGTTTGTCAACAGCTATATACAGCAGTAGTG
GATGCGTCGCCGACCACGACCGAGCCGTGGGATGCTGGAGAATTATTCAG
GTTGGCCTATCCCTCTCTCTGTAGAAGAAACATTCTGCGTAGGCTTTGCA
GTGGATAGAGACGAGGACGAGCAACTGCTGTGGGGGCTGGACGACTACAA
CAGCTACCTTATGATAGTCCAAAAACTATATTGTAACCTACGGTAGTTCT
ACTTGGCGGGGGGGGTGTACTCATTGTCGTGTATGCGGGTATGCGGTAGT
CATTTGACCGTTGAACTCGAATCACTACAAAGCCGGGACTGTAGGGGGGG
GGAGGTGTCACAGCCGTTTCTCTCCACGAGACAGTGTAATCGTTCACCGG
GGTTTCAATATAGTGTGCGTTATCGAAACGCCTTCGCCGAATGCCGATAA
GTCGCGTGGTGTGTTCCCGCTCGGGCATTTCTCTAGGTCCTGGTGGAAAA
GTCGACAACATTTGAAATCCCTCCTCGTCCAGCGGCGCCATGATGGTCAG
CATTTTTTTTCGCGTGTCGGAACTGTAGCTTTCGTTATTTCAACCTGAGG
AGTGGCACTGGGACGGTGGTTGACAAAAAACACCGCTGTCACTACACATC
AAACTACTATAATTTTTTCTGGCATTTACTCTGTCTCCTACCCTTACGTT
TGTGTGTGTTGCACGGCGTGTTTCGGCTTCGCCCTTGCAGGGATGGCTGG
CCGTACGCAAGGCGAAAGAGGCCGCCGAAGAGGCGGGAGTTGCACCGCCT
CCCGCAACAGGCGTGTGGAAGTTCAACAAGAACACACAGGCCTGGCTACT
TCGGCATGTCTTCTCTGATGATCAGGTCCGTTTCTCATGCTGCTCTGCCC
GTCCCATTGTCCGCCTGTGGGCCGCCCGCGGGACGATGGGTGCTCCATGG
TCCGTCCCATGGGTCCCTTGGACCGTCCCATGCATCCCGTTGTCCGCCAC
AAGCGTTCCATGGGCCGTTCCATTCGTCTCATGGGCCGCCCGTCACTGGC
AAAGCTCACTCAATCCCGTTTTCCTTCTGCACGATAGACCCCCCTTTTCT
CCGTCACGCCCGTGTGGGGGCACACAGAAGGGATTAGGCCTTGGTTGCTT
GCATATGGACATGTCACATGGAACGCCATGCCTACGCGATACGTGAAGGA
AGTGGCACTCCTGTGTGGATTGCAGCATGAGATGAGGTGCCTCGGTAGTA
TAGTGGGGCACTTCTCATCGCACGGATCCGTACGCCATGTCTGGTGCCTA
CCGTTGGTGGAGGTCTACAGCAAACGGCGACGTTGCACTCAGAGTTGGCA
CCACGATGTGATGGTTGTTGGATGCGGCACTCCAACGAACGTCGACATGA
TGCTGTGTTGCGTTGTGCTCACTTCGATGCATGGTTTGATTTCGTTCTTT
CTCGCCCCACCCGCCGAGATGTGTCTTATTCTCCTTTGTGACCCCCCCCC
TCCCTCCACCCAAGGCTATCAAACTATTTAGAGACAAATGCGCACACTGT
CACATCGTTAGTTCTGCCCGGAAGCTTCAGTTTTGCATTGTTCCGAAGCC
AACATGTCACCTCCGTAGTCTATACCTTTTTCACTGCTGTTTTGTGGACA
GATCGACGACAAGAGGTTTGAGACTCTCTGCCTGTATCTCGAAGGCCTCA
AGGGAGCTGGCCGACAGGCGAGTTGTAGCGGGAAAAAACCGGATGGCAGC
GTTGGGGAGTGTCTTGCGTCGACGTTTTGTCGGTAAAAGCGTTGCTGCTG
GGGGGGAGGCTGTCTAGTGTGTTTCGTGAATGAGAGTATCGATGGCGTGA
TCGACTGGTTGAGAAACGAAGAGAAAGACATAAGCCTGAGACGAGGTTCT
GTAATCGAAAAATCTTTTCCACGACAATCCCTTCCCCGCCACCGACTTGG
GTGTGGATGTGCTGTGAAAACAACCGTTTCTCCATTGTGTCTTTCCTCTA
GGAGATGTTGAGGGTTGGATCACGCCCGTGAACGTCTAGAAGGGATCGAT
CGTGTTGTTTTGTTTTTGTCTGGACATGGCAGGGGCGGTCCCGTTTGGTG
TTCCAACTTGTGCATGGATTTCTGTCCCTAGCTGTAGTTCAGGCAGTCAG
ATGTTGGGAGGCACTTTAATAGCCGCCGGTGGTCTGTTCTTCTCCCGTCT
TTCAACAGTTCCGCATACGTCAAACATGAGCAGTATATCTGCCTCCAAAG
CTATGCACACGCTTAGTGCTTTGGCCGAGATTCATACGCAGACAAAGAGG
CAAAAGGCAACCACCCTTCCGAGTGACGAAATTTTATTGACTGAACGTCG
TGGTTTCTACCTCGCACGCTTGATGTCTTTATCTTAAGTTTGTATTCTCC
GACGGAAGGGAGCAAGTGTGGGAGTTCAGGTTGGGGGCACTTAGTAGCAT
GGCTGCAATCTCGTGAAAGCCCTGAACGATAGCCCTGCAGCAAGCGGAAG
TCCTGCGTCATGGCACCTTCCTGCCCACAGCATGATGTTCTTACTCGTTG
AAGGGAACGAGTCGTCCCGCTTTTCGCTCGCTCGGCATCTTCCTGCCCAC
AGCGTTATGTTCCTACTCGCAACAGCTGACGATTTGTCCCGCATTTCCCT
CTCCCGTCCGAAATCACGCCGCGTTTTCCTTCATCTCAGCGGGTGCTGGC
CGCCGCACAAGCGATCATCGACAAGCACGGCCCCGATGAGGGGAAGGAGC
AAACGGCGGTGGAACGCGAGGCAGCGGCAGCGGAAGTCGCGACGGCTGAC
GACGAAACCGTCACGAACGAAACGGCAGCGGTTGTCCCGAGCGGGTACAA
CAGCGATTCCACCGACGACGAGGCGGAGGATAATGATGGCGGCGCTTTTG
CGGTGGAACAGCAGGCGGGAGGGGAAGGGGGGGTAGCGGCGTTAACCCCG
GCGGCGACAAAAGCAGGCAATGCGGGGGAATTCTCTTTCGGGTTCTTTGA
TGGCACCGCTGAGGAGGCGACCTCCAAGACGGCGGCGAAGGAGGAATCAG
ATAGCGATGGTAGCAGCAGCAGCAGCGATGACGAAGAGGGTGGCGACGGT
GGAGGTGCGGTGGAAGACCTGTCGCCCGCAACCAAGAAGCCGAGGAAAGC
CCGATCAGCCTTGACCGGCAAGTCTAAGGCGGAGGCAAAGGCTAAGGCTG
CCGCGGTGGCGTACGAGAGGGCCCTCCAGGTAGCAGAAGTGCTCGCCTAG
AGGCACTCGTCGTACCAGTGGTAGCGTTCGCAACCCGTACAACTCGCCAT
GTAGGCGGCCGAAACTCTCTACTACAACTCGCCACGTAAGCGGTCGAAAC
TCTCGATACAGAGGTTAGCGCCCGCACTCTAGAACCACTTGTGGTCATGC
TACGAATGGACGCCGTATAGGTTGTAATGTAGGGGCTCTTACCCGAGCTC
ACAGATGGTCCTCAAAGTTCTTAGATTTTTAGTTGTTTCGAGGTTCTATT
GGTTCACTGCGAAGTTGTCAAGTGACGGCGCCAACTCCAAAGTAGTGATC
TGCGAGAGCACCAGCTACTATGTTACTGCAATATCTGCATTTGTACCCCT
CACACAGACTGCCACAGTCGACTCTGAGCAAACGTGCAAGTGACGCTCAT
TTCGTGCTGGCTTCCGCCTGTGGCGTGCTCTGGCGTTGTGGGTGCAAGTT
GTGTGCTACCTGTCCGTGATTGGTGTGTGCCGATGAGGAGGTGTGGTGTG
GCTGTTACCGCTCTGCTTTGTTTGCAAGGACGAATATGTAGTAGTCGTTG
GTCTCCTACTTGCGACGCCTATGTATCATAGGTGAAGCCCATTTCTGTAC
ATGTCAGTCTTTTGTTGAAATTCGCGATGCATGTGGCTGGTATCATATGG
CATCAGGTCTGAAGTAGCTTTGCGTCTTTCACGCACATGCGAGAAAACTT
GTTGGTGTACAATAAGCTAAACGCACGAAGTGGTCCCATTTCTGGTGTCT
GCCCTTCTTGATGTGCAAAAGCAGACACATGGCAGTCCTGGT back to topCoding sequence (CDS) from alignment at Scaffold_623:57479..63570- >EsuBft1060_3a-0001 ID=EsuBft1060_3a-0001|Name=EsuBft1060_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1038bp|location=Sequence derived from alignment at Scaffold_623:57479..63570- (Ectocarpus subulatus male Bft15b) ATGGCGAAGAAGAAGAAAAGCACGAAAAAGAAGAAGCGTGTGGCGGTGCA CATCAGGGAGAACATCAAGGGCAAGAGAGAGGCCGCCGCCTCTGCGGATG GGGAAGTCGGTGCCGACAAGCGAGCGCCCCTGCTGGCAGCCCCTTTGGGC GTAGGGAAGCCGAAGCGTCCTCGAGAGCCAGCAAACGATGCAGCGTCACT GGGGAAGGCCAAAGACGACCCTGCCCGCAAAGAAAAAGAGCGTACTGACG CGAACAACTATCTCGCGGGATGGCTGGCCGTACGCAAGGCGAAAGAGGCC GCCGAAGAGGCGGGAGTTGCACCGCCTCCCGCAACAGGCGTGTGGAAGTT CAACAAGAACACACAGGCCTGGCTACTTCGGCATGTCTTCTCTGATGATC AGATCGACGACAAGAGGTTTGAGACTCTCTGCCTGTATCTCGAAGGCCTC AAGGGAGCTGGCCGACAGGCGAGGGCGCGGGTGCTGGCCGCCGCACAAGC GATCATCGACAAGCACGGCCCCGATGAGGGGAAGGAGCAAACGGCGGTGG AACGCGAGGCAGCGGCAGCGGAAGTCGCGACGGCTGACGACGAAACCGTC ACGAACGAAACGGCAGCGGTTGTCCCGAGCGGGTACAACAGCGATTCCAC CGACGACGAGGCGGAGGATAATGATGGCGGCGCTTTTGCGGTGGAACAGC AGGCGGGAGGGGAAGGGGGGGTAGCGGCGTTAACCCCGGCGGCGACAAAA GCAGGCAATGCGGGGGAATTCTCTTTCGGGTTCTTTGATGGCACCGCTGA GGAGGCGACCTCCAAGACGGCGGCGAAGGAGGAATCAGATAGCGATGGTA GCAGCAGCAGCAGCGATGACGAAGAGGGTGGCGACGGTGGAGGTGCGGTG GAAGACCTGTCGCCCGCAACCAAGAAGCCGAGGAAAGCCCGATCAGCCTT GACCGGCAAGTCTAAGGCGGAGGCAAAGGCTAAGGCTGCCGCGGTGGCGT ACGAGAGGGCCCTCCAGGTAGCAGAAGTGCTCGCCTAG back to top
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