EsuBft652_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft652_7a-0001
Unique Name	EsuBft652_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_614	contig	Scaffold_614:109988..111540 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_010878-tr
ProteomeId	EsuBft652_7
Protein domains	IPR027124
Protein domains	PTHR23227
Protein domains	IPR005135
Owner	apollo_admin@sb-roscoff.fr
Note	craniofacial development protein 2 os:bos taurus gn:cfdp2 pe:1 sv:2 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1553
Hectar predicted targeting category	other localisation
Evalue	3.07e-20
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39VM0@33154\|Opisthokonta,3BKMM@33208\|Metazoa,3D1CS@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Endonuclease/Exonuclease/phosphatase family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft652_7a	EsuBft652_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_614 109988..111540 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft652_7a-0001-exon	EsuBft652_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_614 109988..111540 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft652_7a-0001-exon	agat-three_prime_utr-19748	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_614 109988..110124 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft652_7a-0001-cds	EsuBft652_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_614 110125..111540 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft652_7a-0001	EsuBft652_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_614 110125..111540 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_614:109988..111540-
coding sequence from alignment at Scaffold_614:109988..111540-

spliced messenger RNA

>EsuBft652_7a-0001 ID=EsuBft652_7a-0001|Name=EsuBft652_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1553bp|location=Sequence derived from alignment at Scaffold_614:109988..111540- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCGCTCGCAGGAGAAGGGAGGCAACCGCGGGCACCGCGGGGAGGG
AGTGCTGCACCCTCCTCGTCAAAACACTACAGGCAAGAACCGAGCTCTGC
AGAGATGGATTAATGCGAGGAAACTCGCCGCTCGGAAAGTACGGAAGAAA
GCACACCCGCAACGCGAGGCGGCCCGAGAGAGACACGAGACCGCAGCGGC
CGTCAAGGCGGCTGCGAAGAGGAAGGCACGAGAGGGCGACCTATCATTCG
GCACGTTCAACGTACGCACGCTCGCCTGCAGCGGTAGGAACCCCATCGGT
CACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGT
GATAGGACTTCAGGAGACCCGACGAGCGGGGCAAGGTTCAATTGCACACG
ACGGGTACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAG
AGGGGCGTACACGGTGTGGGCATAGTGATCAAGGAGGCCATGTGGGAGAG
TGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATTTGCCCGAGGCTGATGA
AGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAGCTTTCGTGGTGGGG
TACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGC
CAAGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTTCACA
GCCGTGACCATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGG
AGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGCGTACGGACGCGA
CATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGACAACC
AACTCTCCCTGACCAACACCTACTTCCGGACACCGAAGGGTGGAGTGCAG
CACACATTCCAGAGCTCCAACAAGGGAAAGGAGAAGTACCGCCTCGACTT
CATCCTCATGCGTCAGGCGGACCGGCGTTTCGTGCGCAATGTCTCCGTCA
AACGTGTCGACTTCAAAGACTCTGACCACAACCTCGTGCTTACGACTGTC
CGCCTCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGG
AAGCAGGCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACC
TACGGGACGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCG
CTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTGAT
GTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCAGA
GAGGCTGGTACACAGCTAAGCGCAGCACGAGATCTTCGAAGCGTCTAAAG
AGATTAAGGCGGCACAGCAGCAACTGCGTGGGGCCTCAAAGAATAGCGCC
TTCGAAGCGACCCTGAAGACGATGCTCAAGGCGGCGCGGAAGAAGCGTAG
CATCGCGAGGTGGAGAGCACTGGAAACGTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN

protein sequence of EsuBft652_7a-0001

>EsuBft652_7 ID=EsuBft652_7|Name=EsuBft652_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=471bp
MHRSQEKGGNRGHRGEGVLHPPRQNTTGKNRALQRWINARKLAARKVRKK
AHPQREAARERHETAAAVKAAAKRKAREGDLSFGTFNVRTLACSGRNPIG
HNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDK
RGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVG
YAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR
RRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQ
HTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTV
RLPPRVAPNRRVRGNSGSRRIRIDLERLRKDKHLRDAFQNRASSRPPPTA
LRRPTGETAAELTATVMSAAAETAPLARCARGQRGWYTAKRSTRSSKRLK
RLRRHSSNCVGPQRIAPSKRP

mRNA from alignment at Scaffold_614:109988..111540-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft652_7a-0001 ID=EsuBft652_7a-0001|Name=EsuBft652_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1553bp|location=Sequence derived from alignment at Scaffold_614:109988..111540- (Ectocarpus subulatus male Bft15b)
ATGCACCGCTCGCAGGAGAAGGGAGGCAACCGCGGGCACCGCGGGGAGGG
AGTGCTGCACCCTCCTCGTCAAAACACTACAGGCAAGAACCGAGCTCTGC
AGAGATGGATTAATGCGAGGAAACTCGCCGCTCGGAAAGTACGGAAGAAA
GCACACCCGCAACGCGAGGCGGCCCGAGAGAGACACGAGACCGCAGCGGC
CGTCAAGGCGGCTGCGAAGAGGAAGGCACGAGAGGGCGACCTATCATTCG
GCACGTTCAACGTACGCACGCTCGCCTGCAGCGGTAGGAACCCCATCGGT
CACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGT
GATAGGACTTCAGGAGACCCGACGAGCGGGGCAAGGTTCAATTGCACACG
ACGGGTACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAG
AGGGGCGTACACGGTGTGGGCATAGTGATCAAGGAGGCCATGTGGGAGAG
TGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATTTGCCCGAGGCTGATGA
AGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAGCTTTCGTGGTGGGG
TACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGC
CAAGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTTCACA
GCCGTGACCATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGG
AGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGCGTACGGACGCGA
CATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGACAACC
AACTCTCCCTGACCAACACCTACTTCCGGACACCGAAGGGTGGAGTGCAG
CACACATTCCAGAGCTCCAACAAGGGAAAGGAGAAGTACCGCCTCGACTT
CATCCTCATGCGTCAGGCGGACCGGCGTTTCGTGCGCAATGTCTCCGTCA
AACGTGTCGACTTCAAAGACTCTGACCACAACCTCGTGCTTACGACTGTC
CGCCTCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGG
AAGCAGGCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACC
TACGGGACGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCG
CTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTGAT
GTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCAGA
GAGGCTGGTACACAGCTAAGCGCAGCACGAGATCTTCGAAGCGTCTAAAG
AGATTAAGGCGGCACAGCAGCAACTGCGTGGGGCCTCAAAGAATAGCGCC
TTCGAAGCGACCCTGAAGACGATGCTCAAGGCGGCGCGGAAGAAGCGTAG
CATCGCGAGGTGGAGAGCACTGGAAACGTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN

Coding sequence (CDS) from alignment at Scaffold_614:109988..111540-

>EsuBft652_7a-0001 ID=EsuBft652_7a-0001|Name=EsuBft652_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1416bp|location=Sequence derived from alignment at Scaffold_614:109988..111540- (Ectocarpus subulatus male Bft15b)
ATGCACCGCTCGCAGGAGAAGGGAGGCAACCGCGGGCACCGCGGGGAGGG
AGTGCTGCACCCTCCTCGTCAAAACACTACAGGCAAGAACCGAGCTCTGC
AGAGATGGATTAATGCGAGGAAACTCGCCGCTCGGAAAGTACGGAAGAAA
GCACACCCGCAACGCGAGGCGGCCCGAGAGAGACACGAGACCGCAGCGGC
CGTCAAGGCGGCTGCGAAGAGGAAGGCACGAGAGGGCGACCTATCATTCG
GCACGTTCAACGTACGCACGCTCGCCTGCAGCGGTAGGAACCCCATCGGT
CACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGT
GATAGGACTTCAGGAGACCCGACGAGCGGGGCAAGGTTCAATTGCACACG
ACGGGTACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAG
AGGGGCGTACACGGTGTGGGCATAGTGATCAAGGAGGCCATGTGGGAGAG
TGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATTTGCCCGAGGCTGATGA
AGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAGCTTTCGTGGTGGGG
TACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGC
CAAGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTTCACA
GCCGTGACCATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGG
AGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGCGTACGGACGCGA
CATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGACAACC
AACTCTCCCTGACCAACACCTACTTCCGGACACCGAAGGGTGGAGTGCAG
CACACATTCCAGAGCTCCAACAAGGGAAAGGAGAAGTACCGCCTCGACTT
CATCCTCATGCGTCAGGCGGACCGGCGTTTCGTGCGCAATGTCTCCGTCA
AACGTGTCGACTTCAAAGACTCTGACCACAACCTCGTGCTTACGACTGTC
CGCCTCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGG
AAGCAGGCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACC
TACGGGACGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCACGGCG
CTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTGAT
GTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCAGA
GAGGCTGGTACACAGCTAAGCGCAGCACGAGATCTTCGAAGCGTCTAAAG
AGATTAAGGCGGCACAGCAGCAACTGCGTGGGGCCTCAAAGAATAGCGCC
TTCGAAGCGACCCTGA