EsuBft928_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft928_7a-0001
Unique NameEsuBft928_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_611contigScaffold_611:63750..69589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLT6
ProteomeIdEsuBft928_7
Protein domainsIPR004344
Protein domainsSSF56059
Protein domainsIPR027751
Protein domainsPTHR12241
Ownerapollo_admin@sb-roscoff.fr
Noteprobable tubulin polyglutamylase ttll9 os:bos taurus gn:ttll9 pe:2 sv:1 [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length1190
Hectar predicted targeting categoryother localisation
Evalue8.22e-220
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Ec32 ortholog descriptionpredicted tubulin-tyrosin ligase
Ec32 orthologEc-02_002820.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameTTLL9
KEGG koko:K16603
Descriptionprotein polyglycylation
COG categoryS
BRITEko00000,ko01000,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0018095
GO0035082
GO0005737
GO0070740
GO0043231
EC6.3.2
GO0003351
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft928_7aEsuBft928_7aEctocarpus subulatus male Bft15bgeneScaffold_611 63750..69589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_7a-0001EsuBft928_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_611 63858..69479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_7a-0001-exonagat-exon-45940Ectocarpus subulatus male Bft15bexonScaffold_611 63750..64098 -
EsuBft928_7a-0001-exonagat-exon-45942Ectocarpus subulatus male Bft15bexonScaffold_611 64461..64582 -
EsuBft928_7a-0001-exonagat-exon-45937Ectocarpus subulatus male Bft15bexonScaffold_611 65096..65201 -
EsuBft928_7a-0001-exonagat-exon-45941Ectocarpus subulatus male Bft15bexonScaffold_611 66180..66253 -
EsuBft928_7a-0001-exonEsuBft928_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_611 67183..67306 -
EsuBft928_7a-0001-exonagat-exon-45936Ectocarpus subulatus male Bft15bexonScaffold_611 67477..67628 -
EsuBft928_7a-0001-exonagat-exon-45939Ectocarpus subulatus male Bft15bexonScaffold_611 68437..68515 -
EsuBft928_7a-0001-exonagat-exon-45938Ectocarpus subulatus male Bft15bexonScaffold_611 69406..69589 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_7a-0001-exonagat-three_prime_utr-23149Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_611 63750..63857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_7a-0001-cdsEsuBft928_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_611 63858..64098 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft928_7a-0001-exonagat-five_prime_utr-15053Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_611 69480..69589 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft928_7a-0001 ID=EsuBft928_7a-0001|Name=EsuBft928_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1190bp|location=Sequence derived from alignment at Scaffold_611:63750..69589- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTGTGTCATACCCTAGCACCAGCTTGCCTCCTTACCCGCCTTGACCACC
GCTTCCCTTTGTGTTTTCAGCTTCTGGACCGGCACTTTCGTGCTCCCGTC
CGAGTACGGAATGTTCGTTGAGGAGTTCAAGCGCTCCCCGGGGGCGGTGT
GGATCATGAAGCCCATCGGACGGGCACAGGGGAGGGGGATCTTCTTGTTC
AACAAGTTGAGTCAGATCAGCGAGTGGAAAAAGGACCACCGATGGAAAGC
GGACCAACCCCAGGCCGAGGCGTACATCGCACAGCGGTACGTGGAGAACC
CGTACCTGATCGGCGGTAAGAAGTTTGACCTCAGGCTGTACGTGCTGGTG
ACTTCCTTCAACCCCCTCACGGTGTGGCTCTACAACGGGGGTTTCGCGCG
TTTCTCGGGCACAAGGTACTGCACCGACAGGGCGGCGCTGGCTAACCCTT
ACGTGCACCTCACGAACGTGGCGATCCAGAAGAAGTCGGAGGACTACGAC
AAGGAGGTCGGCTGCAAGTGGGACCTGCAGAGCCTAAAGATGTTTTTGAC
CCTCAAGCACGGTGCTCGCGCCGTGGACGAGCTGTTCTACGACATGCAGT
GCCTCATCACGAGATCGCTGCTGTCGGTGCAGAAGAGCATCATTCACGAC
AAGCACTGCTTCGAGCTGTACGGCTACGACGTCCTCGTGGACGCGGATCT
CGAGCCCTGGTTGCTGGAGGTTAACGCCTCTCCGAGCCTGAGCGCCGAGA
ACGCTGCCGACAAGAAACTCAAGACTCAACTCATTTCCGACGTCCTGGAC
GTGGTCGACCTCGAGGGTAGGTTGGAGGGCGACGAGCAGAGGGTGGGATG
CTTTCGCTTGATCTGGGCGAACGGCCCGACGGACACGCGGGCGGCAGGGG
GCTACTCCACCTTCCTGGGCACGGAGAAGCCTCGGGCCGCAGTCGTCGCC
ACCGCCGCGCCCCCTTCGCTCAAGCCGCGGCAAGCGACGAAAACGATGAC
GGGGTCACCGGCGGCGGCAGGAGGGGGGGCGGCCAGGGGGAAGGGAGGCG
GCACCGACGAGCGCGCCGTGTCCGACCCATAATCTGCCTATGTACGGATG
TCTGGGAGGTTTTCTTCACGGGGATGCAGAGCACGCGCAGCCGCCCGCTG
CTGTTGCTGCTGCGAAAAGCGTATTACATTGTAGAGGGCG
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protein sequence of EsuBft928_7a-0001

>EsuBft928_7 ID=EsuBft928_7|Name=EsuBft928_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=323bp
MFVEEFKRSPGAVWIMKPIGRAQGRGIFLFNKLSQISEWKKDHRWKADQP
QAEAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSG
TRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLQSLKMFLTLKH
GARAVDELFYDMQCLITRSLLSVQKSIIHDKHCFELYGYDVLVDADLEPW
LLEVNASPSLSAENAADKKLKTQLISDVLDVVDLEGRLEGDEQRVGCFRL
IWANGPTDTRAAGGYSTFLGTEKPRAAVVATAAPPSLKPRQATKTMTGSP
AAAGGGAARGKGGGTDERAVSDP
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mRNA from alignment at Scaffold_611:63750..69589-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft928_7a-0001 ID=EsuBft928_7a-0001|Name=EsuBft928_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5840bp|location=Sequence derived from alignment at Scaffold_611:63750..69589- (Ectocarpus subulatus male Bft15b)
TGTGTGTCATACCCTAGCACCAGCTTGCCTCCTTACCCGCCTTGACCACC
GCTTCCCTTTGTGTTTTCAGCTTCTGGACCGGCACTTTCGTGCTCCCGTC
CGAGTACGGAATGTTCGTTGAGGAGTTCAAGCGCTCCCCGGGGGCGGTGT
GGATCATGAAGCCCATCGGACGGGCACAGGGGAGGTGGGTACGCGATTTC
GACTGGTTGTGTGTTATGGGTGGGGCAGCTTCGTCGGAGGACAGAAAGAA
GGCTGACTCAAGACCTTAGAGAGTGAGTGACGGGCCCGATGCGGGAAGCA
AAACGACCCCCACGCGGAAACGCCCATCGTTTCACATATCATGATTCACG
TAACCCCCAGAGGTCAGTACTCTGCCTAGCACCCCCAAACACACCGTGTC
CGTGCGTAGTGCATCGAGAGAATGGTAACCTAGACGTCGGGCGACTTTCC
GTGTTTTTTTTTGTTGTCGCGCTGTGCCCGGTGGACACGCAGTAGTAGAT
TAGACGTTCGAAACTTGTGGATATAGAGGAGAGAAGAAGGCAAGGATCAA
AACGTGTAGAGGCCTCAGCTTGGTTTTTCTTTCGGAGAAGGCGGTGAGCA
GCTTGGCGTTGTTCCTGTCTTGAACGAGATTTTGTCGCTGCAATTGGCAT
GGTAGACTTGTAATGGTGCCTTCGTGACACCGTACAGCCGACAAGCATTG
ACGACGGAAGGCATCTTGGACGCCGACCCCGTACGCGGCGTGCTCGTGCT
CTCGTTTGGGTGTACGCCTTTGTTTCGCGTGGGCACTCGTCTACGGTACG
TTCTCCTTTTCGTTGTTGTTTTGTCGTTCCGATTCCGACTCACTATCAAG
TTGACGATTTCATGTCCATTCTGTTTGACGTTTGGCAAGATATGACGTCG
AGTCCTTCATGTAGCAAGGACATGATGTGACCTCGGTGGGGAAAAGACGA
ACCAATAGCAGCAGCAGCAGTACCTAACATACGATGTCCTGACTGACTCG
ACGCGTGTTTCCACTTCACGTTGGTTGCTCGTGTCCTCACGACTACAACC
TGGCCTGTTCGCTGCTTCAAACAGGGGGATCTTCTTGTTCAACAAGTTGA
GTCAGATCAGCGAGTGGAAAAAGGACCACCGATGGAAAGCGGACCAACCC
CAGGTAACTATTTAGCCGCTTTTGGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGGTGTTGTTGCTGCCG
TCGTGGCCGTCGCCGTCTTCATCGCACTCGTGGTGGTGGTTGTTGTAACG
GGCGGCCGGTCGTCTTAGTTGATATCGCATTCCTGTCGTTGTTTGCTGCT
GCTACTGCTGTTGCTATTGTATTATTTGCGAGGGAGGGGTGCTATCGTGG
TTGCGGGCGCAAGAGGCATTGCTATTGCCGTGCTACCAGGCAAGTCGTTG
GCTTGTCGACTTTAACCTGTGCTGTTTCTTCCCCGGTCCCCCCGAGAAAT
CTGGGGGTTAACTATACCACCACGCGGGCTGATGACAGGTGGACCCTCGA
CGTACGCTCCGATGCACACGCGTGGTGATCAAAGAAGGACGACATTTTAG
CAAGAGCCCACTCCAAAGCCGCCCGCCCTCCCAAGCAACATTGTGTTCTG
AGTGCCCTCCAGTCCACCTGTCCGTTCATCCTCCTTCCAGAAGTTGTTTC
CTTACCAGAGTCCTACGGTATTTTCAAGAAAAGGTATTCGTCACATGCGG
GTCCGGGTTACGCGATTGTTCCCTGATGTGCTGCTGTGTCAGTACAACTT
GTCGGCTCTCGCGTGTTTTTGTTTTTCTCTCGGATTCACCCTTGACCTTT
TTTTCGCACACGTGCGAAACTGGTTTGCCTTGCAGTCGTCGTTTTATTTT
TTATTTTTTTACTTTGTTTGGCATTTTTCTTCGTTCTTCGATCCAAAATG
GAAACCCCCAGGCCGAGGCGTACATCGCACAGCGGTACGTGGAGAACCCG
TACCTGATCGGCGGTAAGAAGTTTGACCTCAGGCTGTACGTGCTGGTGAC
TTCCTTCAACCCCCTCACGGTGTGGCTCTACAACGGGGGTTTCGCGCGTT
TCTCGGGCACAAGGTGAGGGAGGTCGCACCCTGCATGTTTGCTACTAGCG
CGATGCGATGTTATCGACTAACTTCTACCACGACTTAGAGAGAGAGGGAA
GCAGGGGGACAACGACGCTCATGCGAAAATATCGATACTCAATCGTGCTG
AATCGGCAAGGGCTTCGGTGGTTGCGCCCGCAGGTACTGCACCGACAGGG
CGGCGCTGGCTAACCCTTACGTGCACCTCACGAACGTGGCGATCCAGAAG
AAGTCGGAGGACTACGACAAGGAGGTCGGCTGCAAGTGGGACCTGCAGAG
CCTAAAGGTGGTGATCGCTGGTTCGTTAGGCCCGCTGTATACAGTAGTCT
ACAGTACCAATGAACACCGCCTACCTTCCCTTCAACTATCCGCTAGGTAC
GGTTTTAAAGCGATCCACGTCCACTTATAGCACCCTCACACACACTCTCG
TCGTGCCACGGTGCGAGAGAACTTGCGGCTGGCGAAGGCGATGACCCGCG
GTGTGTGGTATCTGGTGTGTGGTAGGTAGTATGGTGGTTCGTGGTTGTGT
GGGCCAGGGTGCACTGCTGTACCCGTACTGTCTCGACGAATTTTGAACTT
TTTCTTTCTCCGCGTTTCGGCGATTTTGTGACGACGCAGACCCTTCAAAC
ATCGCGTCAGTCGTCTCAATTTGGGGGGTTCGTGGATGAGTAACAACCCG
GCTTCCCCAGACACCCCCCGCTGCGTCGAAACCTGCCTCGACGTTTTGTT
GATGCTGAAGCGAAACCCCATGTCGTTCTTGGAACCCCGGGCTGTGCTTT
TGACCCTGAACCGGACCCGTAAGTCCTTTTTGCAGGTTGAAGGGTATGCG
ACGTCTACATATGTACACTCGACAACGTGCACGTAAACGATTACCTCCCC
GCGCGCACCCACCGTCCGTTCCCCGGCGCCCCTTGTTTTAACGGAGTTGA
ACCATCGGTCCCACCCTGCAAGGGGGAAAACTCGCTAGGCCTCCGTAGTA
TTGTAGTCTAGCTAGCGGCACACCGGTGTTGTGGGGTGTTGAGAGAGAAA
CGGAACAAAGTCTGGATCATCTTGCTTGGTGTTCCTTCATCACGCCGCCG
CCTGGGCGGACGAAAACACCGCTCCGTCCCGGCATCGTAGGGACGCGCGT
GGCCAGTAATCCAGCGACTACGGTATTCGTCGGCATGAGCACACCTCCCT
CCCCTTCCCACCGCTCGCCGCTCTTTGCGGATCCAGATGTTTTTGACCCT
CAAGCACGGTGCTCGCGCCGTGGACGAGCTGTTCTACGACATGCAGTGCC
TCATCACGAGGTGTGTATATGTACGGGGCCCCCCGAGTGGTGGCGGGTGC
TCGATCTCAGGGCGCGGTAGGTGCCGACATCGCGCAAACGTTATTTTACC
ACGGTGTTGCTGCAGGCAGTTCGGGGCAGGTCGGTTGGTTGGTTGCTGGA
GTTATTTATTCGCTTTTTTGGCACTCTCTGACGACGGTGCTTTCAAGACG
TTTCAAGCAAACACGAGATGTTCGTCCTGACTGAACCATGTTTGGGTGTC
CCTTGTGTGCGAATACGTAGCTTCACCGCCTGACAGTAGCTCAAGCTCAT
TCCCGCGACCATGTCTCGGGTTGTCTTCCTTCCCTATTCTGTGTGGACGA
ATTCTACCATTGGTGTTGTGCGAAGGGCAAATGGATGATCGTGTTTGGTT
GGTCTTGCTTACCTCGCTTTTTTCACCGGCGGCAAGTTTTGAGGCAGCAG
CGCTCTGCGTAAGATGAAGTATCGTTGCCTCGTCACAACACAGTTAGCAT
TTTACGTTTGAATTGAGTTCACAATGTGAAATTTTCACCTTGGGCGGTGA
TGTACGCACCCTGCTGTTGCTCCTTATGTGGAATGGGAGCAGGCACTCAG
CACAACTTTTTCTGAGGCTCTATAATGCAAATAGGTGGTCCGCAGCGTGT
GGCGCTAAAGCTAGGTGTGTACTGCCAGAAAGCCCTTCACTTCACTGTCC
AAGTGGGTCTTTCCCTTTTGTGTCTCGTTTCCATTTTTTGCTTGGTATCC
TCTCTCTCTCTCTCTCCCTCCTTCTCTCTTTTTCTATTTCTTCCTTTCTC
TCTTTCTCTCTTTCTCTCCCTGTCTCTCTCTCTCCGTCTCTTTCCGCCTC
TGCCTCTGTCCCCCTCTCTCTCTCACTCTCCGCCTCTGTCTCCGCCTCTG
TCTCTGCCTCTGTCCCTCTCTCTCTCTCCGTTCCTTGCCTCCCGCCTTTT
CTCTTCCTTCGTCTCTGCATTGCTGTTGGCTGAATCAGATCGCTGCTGTC
GGTGCAGAAGAGCATCATTCACGACAAGCACTGCTTCGAGCTGTACGGCT
ACGACGTCCTCGTGGACGCGGATCTCGAGCCCTGGTTGCTGGAGGTAGGT
GTGTGTGTGTGTGTGTGTATTGTATCCGATGTCCACAACGACGATGATAG
CAAACCACCCCTATTTTCTAAATTCCTTGTTCATTCCTCACGTATCACCC
CCGTTTGTATGCAAACAAACTCTTGCGAACATCAGGGCTGAGACTTCTGA
AACATTTCCGAAGGTGTTCGGGCCTCACTCATCGTCGGGTGGCTCTTATA
TCAAAATCGACCACCTGGCTAAGCAGCTGACCAGTGAAATGATACGATTT
TACAGTTTTCATAGTTTCACTGTGGGCACGTGTGTGTTTGTGTTATAGTT
GTACTTAGCATGGACACACCGGCCTGACCAATGAAAACACGCCAGTCTCG
GTGCGGCTAATCACAGAAATTGTTTGTAGAGGCCACGTACCATGATCTGG
ACACCTCCGGGGGCATCATGGGGGAGGCTAAGTCACTCTCCGGAATAATG
ACAGAAACGCCAGCACAACAGAATTTTGTCGTCTGTGCGTGTGTTCTGCC
CGCCAAGGTTAACGCCTCTCCGAGCCTGAGCGCCGAGAACGCTGCCGACA
AGAAACTCAAGACTCAACTCATTTCCGACGTCCTGGACGTGGTCGACCTC
GAGGGTAGGTTGGAGGGCGACGAGCAGAGGTAAGTCGTGCTCGAGAGCGA
CGAAAGCTCCGATTGCACGTTTCGTAGCGCTGAGTCTAGCAGTTATTTTC
GTTGTTGTTGGTGGTCTGCTGTGGTGGTGGTTGTAGTCGTCGCTGATGCA
GTTGTGGATAGATGTGACAGCAGCGAAGACTGAAGAACCGTTATCTATGC
ATTCCGCACACTAGTGTTTCATTTTGTTTCTCGATCTCGATGGGAGCTGG
GCGCGGGGGGATTAGGGGCATTTCTATTTATAAAGTGCAAATGTATTGAA
GAACTTCACGAAACATCCATCAACAACACCTCGTTTTTTCTTCATCTCTT
TTTGGACTCCCCTCCCCCCCCCCCCCCGACGCCATCATCAGGGTGGGATG
CTTTCGCTTGATCTGGGCGAACGGCCCGACGGACACGCGGGCGGCAGGGG
GCTACTCCACCTTCCTGGGCACGGAGAAGCCTCGGGCCGCAGTCGTCGCC
ACCGCCGCGCCCCCTTCGCTCAAGCCGCGGCAAGCGACGAAAACGATGAC
GGGGTCACCGGCGGCGGCAGGAGGGGGGGCGGCCAGGGGGAAGGGAGGCG
GCACCGACGAGCGCGCCGTGTCCGACCCATAATCTGCCTATGTACGGATG
TCTGGGAGGTTTTCTTCACGGGGATGCAGAGCACGCGCAGCCGCCCGCTG
CTGTTGCTGCTGCGAAAAGCGTATTACATTGTAGAGGGCG
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Coding sequence (CDS) from alignment at Scaffold_611:63750..69589-

>EsuBft928_7a-0001 ID=EsuBft928_7a-0001|Name=EsuBft928_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=972bp|location=Sequence derived from alignment at Scaffold_611:63750..69589- (Ectocarpus subulatus male Bft15b)
ATGTTCGTTGAGGAGTTCAAGCGCTCCCCGGGGGCGGTGTGGATCATGAA
GCCCATCGGACGGGCACAGGGGAGGGGGATCTTCTTGTTCAACAAGTTGA
GTCAGATCAGCGAGTGGAAAAAGGACCACCGATGGAAAGCGGACCAACCC
CAGGCCGAGGCGTACATCGCACAGCGGTACGTGGAGAACCCGTACCTGAT
CGGCGGTAAGAAGTTTGACCTCAGGCTGTACGTGCTGGTGACTTCCTTCA
ACCCCCTCACGGTGTGGCTCTACAACGGGGGTTTCGCGCGTTTCTCGGGC
ACAAGGTACTGCACCGACAGGGCGGCGCTGGCTAACCCTTACGTGCACCT
CACGAACGTGGCGATCCAGAAGAAGTCGGAGGACTACGACAAGGAGGTCG
GCTGCAAGTGGGACCTGCAGAGCCTAAAGATGTTTTTGACCCTCAAGCAC
GGTGCTCGCGCCGTGGACGAGCTGTTCTACGACATGCAGTGCCTCATCAC
GAGATCGCTGCTGTCGGTGCAGAAGAGCATCATTCACGACAAGCACTGCT
TCGAGCTGTACGGCTACGACGTCCTCGTGGACGCGGATCTCGAGCCCTGG
TTGCTGGAGGTTAACGCCTCTCCGAGCCTGAGCGCCGAGAACGCTGCCGA
CAAGAAACTCAAGACTCAACTCATTTCCGACGTCCTGGACGTGGTCGACC
TCGAGGGTAGGTTGGAGGGCGACGAGCAGAGGGTGGGATGCTTTCGCTTG
ATCTGGGCGAACGGCCCGACGGACACGCGGGCGGCAGGGGGCTACTCCAC
CTTCCTGGGCACGGAGAAGCCTCGGGCCGCAGTCGTCGCCACCGCCGCGC
CCCCTTCGCTCAAGCCGCGGCAAGCGACGAAAACGATGACGGGGTCACCG
GCGGCGGCAGGAGGGGGGGCGGCCAGGGGGAAGGGAGGCGGCACCGACGA
GCGCGCCGTGTCCGACCCATAA
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